CSPI06G28720 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G28720
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionribonuclease III domain-containing protein RNC1, chloroplastic
LocationChr6: 25025663 .. 25029862 (-)
RNA-Seq ExpressionCSPI06G28720
SyntenyCSPI06G28720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGATTTTGTAATTGCTCTTCCGCCACACCTCCGCGCCTTATCCATTCCTCTTCAGTCTTCTACTCCCAAGTCCCAACCCCTCCCAAAACCCTGTGCATCAAAGGCCAAAATATTCATCTTCCTAGCCAGGTTTTCCCCATCCTCAAACAGCCCATATCCAGTTCCTCGTAACCCAAGTTCTTCATGTTCGGCCCCTCGCCTTTCGAATAAACCCACCCAGCATTATCTTCTCCATTCACAACCAATGGAACTTTCTTCTTCTTTTGTTAAACTCTCATCCCCTTCTCCTAATTACTCTTTCTCATCTTCTTTAACCCCATTTATCGTTAAAATTCACCCCAATCATCCCATTTTCCCCAACCCCTCGTCGGCTAATTTGCGTGTTTTTGCAGTTGCAGTTGACCCACAACAAGAACTCCCCAAAAACAATCCTCAGAGATTGCTCAAAGAGCTAGCGGAGCGAAAACGAGCTACTTCTCCGAAGAAAAAGGTACCCCCAAGAAGGTTTATTCTTAGACCGCCTTTAGATGATAAGAGATTAGCGGAAAGGTTTCTTAATAGCCCTCAATTAACTCTCAAGTCATTCCCATTACTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCTGATAAAACTTGGATGGATGAGTACTTGCTGGAAGCTAAGCAAGCCCTTGGATATCCTCTTGAGCCATCCGATAGTTATGGAGACGACAATCCTGCGAAACAATTTGATACTTTGTTGTACTTGGCCTTTCAGCATCCCTCATGCGAAAGGACCAAGGCCCGGCACATAAGATCGGGGCATTCAAGGCTCTTTTTTTTGGGCCAATATGTACTCGAATTGGCGTTGGCGGAGTATTTTCTTCAGAGGTATCCTAGGGAATCGCCAGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCCAAGTGGATCAAAGCTGCTAGTTTACAGAATTTGATATTCCCATATGATGACATGGACAAGATAATTAGGAAGGACCGGGAACCACCAGTGAAGTAAGTTTGGTATTGTCTTTTAGTTGGTTCTAGTTGTTTTTTCCCATTGTAAATAGTTCTGTGAATAAGATAACTGTAAGAGATGTTTTTTGTTGGAAAGTTATGTCATCGATTATGTTAAACCCCATTTTAAGTTTTAGAAGAATCACAGAATGTGGTATCATCATGATCAGACTGAAATGTACCAAATGCTTTATGGAAGTTGATTGTGCAATATGATGGTAATGTAATGAATAGTTCACTAGGAACTCGGATTTCTGGGCCAGAAGAGACATTAGGAAATTGGCATTTGATTAGGATAAACGTTGAAGGCATGCTCCTGGTAATCTAAAGTTAGGTAGCTTAGATATGACAGTCGTGGACACTGAGCTTCTTTATATAGATGGTACCTAATTCGTGAAGATGATGCTACAAAAGATCAGCTAAGAGACAATGCTAAGGAAGTTGTTCCACTGCGAATGTTGCACAAAACCTTGATTAAGAAATTTTATATATAGGCGGTTCGGTGCCATGGGGTGACTTCTTTGTGAACCTGAACTTTGCTGAACCTAGCACCAGACATTCTTTCCTCAAATCTAGTACCTGCAGACCATGTAGTCCACTTCATGAATCTGCTTCTTTACTAATTTGTCCATCCTTCATAAACTTGCTTCCAGGCTACTATGATTACATTTACCAACATGGCTTTCCGTTTGCCTCTTTTTGGAAAATGTAGCTTTTATACCACTTGTCCCGTGTCAAATTTGTGGTAAATAGTTGGCCCTGTGAGACTTGCTATTCTATTGAGGGAATTGGGATATTCGATTTTCTTTACCCACTCTGCTTATGGACTTCGTTTGTAGGTCCTGTCTTTGTTTTCAATATTCATCAAATTCATGTTTTAGTATGATGCAAGATGTACTATAGGTTACGTAGTGAAACGTTTGTTGTTTCAAAATTCATTTAACTACTGATCAGCTTATGGGATACCTGATATAACTTTTTTTTTTTTCATTTTTGTTTTCCTTTCATTTTGTGTTCTTTGTTAATTCTTGTTACCAATACCCTGACAGCAGCAAGGGTTGGAAAGAAAATGCTAGATATAAATTGTGGGTGTATTTTACATCATATCATGGTATTACTTTCTGTTATTACATTTCTGGTGGACTATCTTGGACTCAATTGGTAAACTAGTAGCTCAGACTTGGGAATAAAACTTCTGCTGATTCTCTTTCTAAAATAGTTTGGTTCAGTATACCATTTCAACAATGTGAGCCTAAAATTAATTTTCTTTGAGCAGATCTGTATTTTGGGCTTTGTTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTACCGGGTCCTTTTTGAGGTATTCGGAATGGATCCAGATGCAAAGGAATGTGAACCAAGGTTACGCAGGCAACTCGAAGATGTAGACTATGTTTCTGTTGAATTTGAAGACAAAAGGATCGGCTGGCAAGATATGGTCTCCTATAAGGTTAGTTTCATGTTTTTTTTAACAGCACAGTAAACTATTTTTCTATTATCTATCCTTCTTAATAATGAAATCCACTCTTGTAATTCTGTTCCTTCTCTCATTTTTCAGCCTCCAGAAGATGCTCTATTTGCACACCCTAGGCTCTTTCGAGCTTGTGTCCCACCTGGCATGCATCGATTCCGAGGTAATATATGGGATTATGATAGCCGACCTCAAGTCATGCAAGCACTAGGATACCCTTTACCTGTTACTGATAAAATTCCTGACATCACGGAAGCAAGAAATATTGAACTTGGACTTGGACTGCAGGTATTGCCCACCCCACACACACACGATTTTTCTTCTCTCGTTCATAACCACGCGATGATCATATTATTATACATTCTCAACGTCAGTTTTTATTGTCTTGTACGTGTGGATGTGTTTATCAGCGTGATGGCTGGAACTTTGTTATATTTTACGTGTAAGGAGGATAATTAAGGCTTCGTTTAGTAACCATTTGACTTTTGTTTTTAGTTTTTGAAAATTAAGTCTATTTTCTTCTAATTTCTTAGGATGATTTGAATCTTTCTTCACTTAAAAGTTCAATTCTAGCCATATTTAAATAACAAATACAAGTTTTTCTTTAGTTTTCAAAATTTGGTGTGGCATTTTGAAACAAATAAGGTAAGAATTTATAGGTGGAATGATTGTTTATAGGTTTAATTTTTTTAAAACCGAAAACCAACAATTACCAAATAGGCCTAATGCATGTAGTAGTGTTGAATTCCTGCTTGCTTGATATTGATCAACGATTCAATATAATGGTTTTAACTTTTAAGTACCTTTTTAAGCTATATGTAAAATCTGTGGAACAGCATGATCAAGCTAAACTCAGGAAATTTCTTAATCAAATGCAGCTTTGTTTTTTGCACCCATCAAAACACAAGTTTGAGCACCCTCGTTTCTGCTATGAACGATTAGAATACCTCGGCCAAAAGATCCAGGTAAGACCCTTTCTTACATTTATTAGGGAGGAGGTACTGCTTTCTCTCTATCAAAATCCTATCCTTGATGTTTGGATCAAGCAACTAACTTATGGTGGTCGGTCCTATTGTGTTTTGTTCAAGGATATCGTGATGGCGGAGAGACTGTTAATGAAACATTTAGATGCTCCTGGAAGGTGGTTGCAGGTGAAGCACCGGCGATTACTCATGAACAAGTTTTGCGGACGGTATTTGAGGGAAAGATATCTTCATAAACTTATCATCTATTCTGAAAAAGTTCAAGATGCATACGAGAACAATAGGAGGCTTCGAAACCCGGCCACCACGGCTGTTCAGCAAGCTCTTCATGGACTTTCGTATGTAGTTTATGGAAAGCCTGATGTGAGACGTATCATGTTTGAGGTTTTTGATTTTGAGCAAATCCAACCTAAAGCTGTATGAGAATCTTTAAGGTAGATTGTGAAAGGCGAAATAATTAATCTTCTCTTTTCTTTAGGAGTTTCTTTAAGCATATAATTGAAGTAGGTGTGCAAAATCTTGGCCAACAAGGAGAGCTGAGACAGCTTAACCAAAGATGTTGTATTATTATGAGTGACCAATTAACTTTAAGCTACCAATAGAAGACAGATCTTAAGATTTATTGAAAGAAGATAAACCAAATTTAGACATTTAAAGGTACATAGGTGATAG

mRNA sequence

CAGGATTTTGTAATTGCTCTTCCGCCACACCTCCGCGCCTTATCCATTCCTCTTCAGTCTTCTACTCCCAAGTCCCAACCCCTCCCAAAACCCTGTGCATCAAAGGCCAAAATATTCATCTTCCTAGCCAGGTTTTCCCCATCCTCAAACAGCCCATATCCAGTTCCTCGTAACCCAAGTTCTTCATGTTCGGCCCCTCGCCTTTCGAATAAACCCACCCAGCATTATCTTCTCCATTCACAACCAATGGAACTTTCTTCTTCTTTTGTTAAACTCTCATCCCCTTCTCCTAATTACTCTTTCTCATCTTCTTTAACCCCATTTATCGTTAAAATTCACCCCAATCATCCCATTTTCCCCAACCCCTCGTCGGCTAATTTGCGTGTTTTTGCAGTTGCAGTTGACCCACAACAAGAACTCCCCAAAAACAATCCTCAGAGATTGCTCAAAGAGCTAGCGGAGCGAAAACGAGCTACTTCTCCGAAGAAAAAGGTACCCCCAAGAAGGTTTATTCTTAGACCGCCTTTAGATGATAAGAGATTAGCGGAAAGGTTTCTTAATAGCCCTCAATTAACTCTCAAGTCATTCCCATTACTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCTGATAAAACTTGGATGGATGAGTACTTGCTGGAAGCTAAGCAAGCCCTTGGATATCCTCTTGAGCCATCCGATAGTTATGGAGACGACAATCCTGCGAAACAATTTGATACTTTGTTGTACTTGGCCTTTCAGCATCCCTCATGCGAAAGGACCAAGGCCCGGCACATAAGATCGGGGCATTCAAGGCTCTTTTTTTTGGGCCAATATGTACTCGAATTGGCGTTGGCGGAGTATTTTCTTCAGAGGTATCCTAGGGAATCGCCAGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCCAAGTGGATCAAAGCTGCTAGTTTACAGAATTTGATATTCCCATATGATGACATGGACAAGATAATTAGGAAGGACCGGGAACCACCAGTGAAATCTGTATTTTGGGCTTTGTTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTACCGGGTCCTTTTTGAGGTATTCGGAATGGATCCAGATGCAAAGGAATGTGAACCAAGGTTACGCAGGCAACTCGAAGATGTAGACTATGTTTCTGTTGAATTTGAAGACAAAAGGATCGGCTGGCAAGATATGGTCTCCTATAAGCCTCCAGAAGATGCTCTATTTGCACACCCTAGGCTCTTTCGAGCTTGTGTCCCACCTGGCATGCATCGATTCCGAGGTAATATATGGGATTATGATAGCCGACCTCAAGTCATGCAAGCACTAGGATACCCTTTACCTGTTACTGATAAAATTCCTGACATCACGGAAGCAAGAAATATTGAACTTGGACTTGGACTGCAGCTTTGTTTTTTGCACCCATCAAAACACAAGTTTGAGCACCCTCGTTTCTGCTATGAACGATTAGAATACCTCGGCCAAAAGATCCAGGATATCGTGATGGCGGAGAGACTGTTAATGAAACATTTAGATGCTCCTGGAAGGTGGTTGCAGGTGAAGCACCGGCGATTACTCATGAACAAGTTTTGCGGACGGTATTTGAGGGAAAGATATCTTCATAAACTTATCATCTATTCTGAAAAAGTTCAAGATGCATACGAGAACAATAGGAGGCTTCGAAACCCGGCCACCACGGCTGTTCAGCAAGCTCTTCATGGACTTTCGTATGTAGTTTATGGAAAGCCTGATGTGAGACGTATCATGTTTGAGGTTTTTGATTTTGAGCAAATCCAACCTAAAGCTGTATGAGAATCTTTAAGGTAGATTGTGAAAGGCGAAATAATTAATCTTCTCTTTTCTTTAGGAGTTTCTTTAAGCATATAATTGAAGTAGGTGTGCAAAATCTTGGCCAACAAGGAGAGCTGAGACAGCTTAACCAAAGATGTTGTATTATTATGAGTGACCAATTAACTTTAAGCTACCAATAGAAGACAGATCTTAAGATTTATTGAAAGAAGATAAACCAAATTTAGACATTTAAAGGTACATAGGTGATAG

Coding sequence (CDS)

ATGGAACTTTCTTCTTCTTTTGTTAAACTCTCATCCCCTTCTCCTAATTACTCTTTCTCATCTTCTTTAACCCCATTTATCGTTAAAATTCACCCCAATCATCCCATTTTCCCCAACCCCTCGTCGGCTAATTTGCGTGTTTTTGCAGTTGCAGTTGACCCACAACAAGAACTCCCCAAAAACAATCCTCAGAGATTGCTCAAAGAGCTAGCGGAGCGAAAACGAGCTACTTCTCCGAAGAAAAAGGTACCCCCAAGAAGGTTTATTCTTAGACCGCCTTTAGATGATAAGAGATTAGCGGAAAGGTTTCTTAATAGCCCTCAATTAACTCTCAAGTCATTCCCATTACTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCTGATAAAACTTGGATGGATGAGTACTTGCTGGAAGCTAAGCAAGCCCTTGGATATCCTCTTGAGCCATCCGATAGTTATGGAGACGACAATCCTGCGAAACAATTTGATACTTTGTTGTACTTGGCCTTTCAGCATCCCTCATGCGAAAGGACCAAGGCCCGGCACATAAGATCGGGGCATTCAAGGCTCTTTTTTTTGGGCCAATATGTACTCGAATTGGCGTTGGCGGAGTATTTTCTTCAGAGGTATCCTAGGGAATCGCCAGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCCAAGTGGATCAAAGCTGCTAGTTTACAGAATTTGATATTCCCATATGATGACATGGACAAGATAATTAGGAAGGACCGGGAACCACCAGTGAAATCTGTATTTTGGGCTTTGTTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTACCGGGTCCTTTTTGAGGTATTCGGAATGGATCCAGATGCAAAGGAATGTGAACCAAGGTTACGCAGGCAACTCGAAGATGTAGACTATGTTTCTGTTGAATTTGAAGACAAAAGGATCGGCTGGCAAGATATGGTCTCCTATAAGCCTCCAGAAGATGCTCTATTTGCACACCCTAGGCTCTTTCGAGCTTGTGTCCCACCTGGCATGCATCGATTCCGAGGTAATATATGGGATTATGATAGCCGACCTCAAGTCATGCAAGCACTAGGATACCCTTTACCTGTTACTGATAAAATTCCTGACATCACGGAAGCAAGAAATATTGAACTTGGACTTGGACTGCAGCTTTGTTTTTTGCACCCATCAAAACACAAGTTTGAGCACCCTCGTTTCTGCTATGAACGATTAGAATACCTCGGCCAAAAGATCCAGGATATCGTGATGGCGGAGAGACTGTTAATGAAACATTTAGATGCTCCTGGAAGGTGGTTGCAGGTGAAGCACCGGCGATTACTCATGAACAAGTTTTGCGGACGGTATTTGAGGGAAAGATATCTTCATAAACTTATCATCTATTCTGAAAAAGTTCAAGATGCATACGAGAACAATAGGAGGCTTCGAAACCCGGCCACCACGGCTGTTCAGCAAGCTCTTCATGGACTTTCGTATGTAGTTTATGGAAAGCCTGATGTGAGACGTATCATGTTTGAGGTTTTTGATTTTGAGCAAATCCAACCTAAAGCTGTATGA

Protein sequence

MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKNNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAASLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKECEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV*
Homology
[Close]
BLAST of CSPI06G28720 vs. ExPASy Swiss-Prot
Match: Q9SZV0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 901.7 bits (2329), Expect = 3.9e-261
Identity = 431/532 (81.02%), Postives = 478/532 (89.85%), Query Frame = 0 

Query: 4   SSSFVKL-SSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKNN 63
           SSS +++ SS +P  SFSSS++ F  K      I       NLR+ A      Q LP+++
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSK---TQSILTKSRFQNLRICASVTAETQGLPRDS 68

Query: 64  PQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCLP 123
           PQRLLKELA+RK AT PKKKVPP+RFILRPPLDDK+LAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69  PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128

Query: 124 SSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKA 183
           SS+LNNADKTW+DEYLLE KQALGY LEPS+S GDDNPAK FDTLLYLAFQHPSC+R +A
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARA 188

Query: 184 RHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAASL 243
           RH+++GHSRL+FLGQYVLELAL E+FLQRYPRESPGPMRERVFALIGKR LPKWIKAASL
Sbjct: 189 RHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASL 248

Query: 244 QNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKECE 303
           QNLIFPYDDMDK+IRK+REPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA EC+
Sbjct: 249 QNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADECQ 308

Query: 304 PRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 363
           PR RRQLEDVDYVSVEFE K++GWQD+ +YKPPEDALFAHPRLFRACVPPGMHRFRGNIW
Sbjct: 309 PRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 368

Query: 364 DYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLE 423
           D+DS+P+VMQ LGYPL + D+I +ITEARNIELGLGLQLCFLHPSKHKFEHPRFC+ERLE
Sbjct: 369 DFDSKPKVMQTLGYPLTMNDRIKEITEARNIELGLGLQLCFLHPSKHKFEHPRFCFERLE 428

Query: 424 YLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQ 483
           Y+GQKIQDI MAERLLMKHLDAPG+WLQ KHRRLLMNKFCGRYLRE+ LH  IIYSE+V 
Sbjct: 429 YVGQKIQDIAMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEEVH 488

Query: 484 DAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 535
           D YE+NRRLRNPATTAVQQA+HGL+Y +YGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 489 DRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 537

[Close]
BLAST of CSPI06G28720 vs. ExPASy Swiss-Prot
Match: Q8S1Z0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 827.8 bits (2137), Expect = 7.1e-239
Identity = 389/505 (77.03%), Postives = 444/505 (87.92%), Query Frame = 0 

Query: 45  LRVFAVAVD---------PQQELPKNNPQRLLKELAERKRATSPKKKVPPRRFILRPPLD 104
           +RV AVA D              P N+P RLL+ELAERK+A SPKKK PPRRFIL+PPLD
Sbjct: 29  VRVLAVAADHTPPPPPSPSSPPEPANSPSRLLRELAERKKAVSPKKKHPPRRFILKPPLD 88

Query: 105 DKRLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSY 164
           D+RL +RFL+SPQL+LK+ PLLSSCLPS+ L+ AD+TWMDEYLLEAKQALGYPL PS++ 
Sbjct: 89  DERLTQRFLSSPQLSLKALPLLSSCLPSAPLSAADRTWMDEYLLEAKQALGYPLAPSETL 148

Query: 165 GDDN----PAKQFDTLLYLAFQH--PSCERTKARHIRSGHSRLFFLGQYVLELALAEYFL 224
           GD +    PA+ FD LLYLAFQH   SCERT+ RH+RSGHSRL+FLGQYVLELA  E+FL
Sbjct: 149 GDGDDDGCPARHFDVLLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFL 208

Query: 225 QRYPRESPGPMRERVFALIGKRNLPKWIKAASLQNLIFPYDDMDKIIRKDREPPVKSVFW 284
           QRYPRESPGPMRERVFALIGKR +PKWIKAASL NL+FPYDD+DK+IRKDREPP K+VFW
Sbjct: 209 QRYPRESPGPMRERVFALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFW 268

Query: 285 ALFGAIYLCFGMPEVYRVLFEVFGMDPDAKECEPRLRRQLEDVDYVSVEFEDKRIGWQDM 344
           ALFGAIYLCFGMPEVYRVLFE FGMDP+ + C+P+LRRQLEDVDYVSVEFE +++ WQD+
Sbjct: 269 ALFGAIYLCFGMPEVYRVLFEAFGMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDV 328

Query: 345 VSYKPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVMQALGYPLPVTDKIPDITE 404
            +Y+PP DALFAHPRLFRACVPPGMHRFRGNIWD+D+RP+VM  LGYPLP+ D+IP+ITE
Sbjct: 329 AAYRPPPDALFAHPRLFRACVPPGMHRFRGNIWDFDNRPKVMNTLGYPLPMNDRIPEITE 388

Query: 405 ARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLGQKIQDIVMAERLLMKHLDAPGRWL 464
           ARNIELGLGLQLCFLHPSKHKFEHPRFC ERLEY+GQKIQD+VMAERLLMKHLDAPGRWL
Sbjct: 389 ARNIELGLGLQLCFLHPSKHKFEHPRFCLERLEYVGQKIQDLVMAERLLMKHLDAPGRWL 448

Query: 465 QVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQQALHGLSYV 524
             KHRRLLMNK+CGRYLR+++LH  IIY E VQD +E+NRRLRNP+TTAVQQA+HGL+Y 
Sbjct: 449 AEKHRRLLMNKYCGRYLRDKHLHHYIIYGESVQDRFEHNRRLRNPSTTAVQQAIHGLAYC 508

Query: 525 VYGKPDVRRIMFEVFDFEQIQPKAV 535
           VYGKPDVRR+MFEVFDFEQ+QPKAV
Sbjct: 509 VYGKPDVRRLMFEVFDFEQVQPKAV 533

[Close]
BLAST of CSPI06G28720 vs. ExPASy Swiss-Prot
Match: A6YSL1 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=4577 GN=RNC1 PE=1 SV=1)

HSP 1 Score: 826.2 bits (2133), Expect = 2.1e-238
Identity = 393/523 (75.14%), Postives = 451/523 (86.23%), Query Frame = 0 

Query: 22  SLTPFIVKIHPNHPIFPNPSSANLRVFAVAVD------PQQELPKNNPQRLLKELAERKR 81
           +LTP    +H         SS  +RV AVA D      P  E P N+P RLL+ELA+RK+
Sbjct: 12  TLTPLPFSLH--------SSSRRVRVLAVAADQTPPPAPPSE-PANSPSRLLRELAQRKK 71

Query: 82  ATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMD 141
           A SPKKK PPRRFIL+PPLDD+RL  RFL+SPQL+LK+ PLLSSCLPS+ L+ AD+TWMD
Sbjct: 72  AVSPKKKHPPRRFILKPPLDDERLTRRFLSSPQLSLKALPLLSSCLPSAPLSTADRTWMD 131

Query: 142 EYLLEAKQALGYPLEPSDSY--GDDNPAKQFDTLLYLAFQH--PSCERTKARHIRSGHSR 201
           EYLLEAKQALGYPL PS++   GDD PA+ FD L YLAFQH  PS ERT+ RH+R+GHSR
Sbjct: 132 EYLLEAKQALGYPLAPSETLGEGDDCPARHFDVLFYLAFQHLDPSSERTRMRHVRNGHSR 191

Query: 202 LFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAASLQNLIFPYDD 261
           L+FLGQYVLELA  E+FLQRYPRESPGPMRERVFALIGK+ LP+W+KAASL NL+FPYDD
Sbjct: 192 LWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKKVLPRWLKAASLHNLVFPYDD 251

Query: 262 MDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKECEPRLRRQLED 321
           +DK+IRKDREPP K+VFWA+FGAIYLCFGMPEVYRVLFE FGMDPD + C+P+LRRQLED
Sbjct: 252 LDKMIRKDREPPSKAVFWAIFGAIYLCFGMPEVYRVLFEAFGMDPDDESCQPKLRRQLED 311

Query: 322 VDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVM 381
           VDYVSVEFE +++ WQD+ +Y+PP DALFAHPRLFRACVPPGMHRFRGNIWD+DSRP+VM
Sbjct: 312 VDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPPGMHRFRGNIWDFDSRPKVM 371

Query: 382 QALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLGQKIQDI 441
             LGYPLP+ D+IP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEY+GQKIQD+
Sbjct: 372 TTLGYPLPMNDRIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDL 431

Query: 442 VMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRL 501
           VMAERLLMKHLDAPGRWL  KHRR LMNK+CGRYLR+++L   IIY E VQD +E+NRRL
Sbjct: 432 VMAERLLMKHLDAPGRWLAEKHRRTLMNKYCGRYLRDKHLQHYIIYGETVQDRFEHNRRL 491

Query: 502 RNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 535
           RNP+TT+VQQALHGL+Y VYGKPDVRR+MFEVFDFEQ+QPKAV
Sbjct: 492 RNPSTTSVQQALHGLAYCVYGKPDVRRLMFEVFDFEQVQPKAV 525

[Close]
BLAST of CSPI06G28720 vs. ExPASy Swiss-Prot
Match: Q5L0Q3 (Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rnc PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.6e-10
Identity = 40/124 (32.26%), Postives = 60/124 (48.39%), Query Frame = 0 

Query: 165 DTLLYLAFQHPSCERTKARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERV 224
           + LL  AF H S      R +   + RL FLG  VLEL +++Y  Q++P  S G + +  
Sbjct: 32  EKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLR 91

Query: 225 FALIGKRNLPKWIKAASLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEV 284
            A++ + +L K+  A S   L+      +    + R   +  VF A  GA+YL  GM  V
Sbjct: 92  AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMDAV 151

Query: 285 YRVL 289
            R L
Sbjct: 152 IRFL 155

[Close]
BLAST of CSPI06G28720 vs. ExPASy Swiss-Prot
Match: A4IM67 (Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=rnc PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-09
Identity = 41/126 (32.54%), Postives = 60/126 (47.62%), Query Frame = 0 

Query: 163 QFDTLLYLAFQHPSCERTKARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRE 222
           Q + LL  AF H S      R     + RL FLG  VLEL +++Y  Q++P  S G + +
Sbjct: 30  QNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTK 89

Query: 223 RVFALIGKRNLPKWIKAASLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMP 282
              A++ + +L K+  A S   L+      +    + R   +  VF A  GA+YL  GM 
Sbjct: 90  LRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMD 149

Query: 283 EVYRVL 289
            V R L
Sbjct: 150 VVLRFL 155

[Close]
BLAST of CSPI06G28720 vs. ExPASy TrEMBL
Match: A0A0A0KGG7 (RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G494980 PE=4 SV=1)

HSP 1 Score: 1093.2 bits (2826), Expect = 0.0e+00
Identity = 533/534 (99.81%), Postives = 533/534 (99.81%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
           MELSSSFVKLSSPS NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK
Sbjct: 1   MELSSSFVKLSSPS-NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
           SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE
Sbjct: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 533

[Close]
BLAST of CSPI06G28720 vs. ExPASy TrEMBL
Match: A0A1S3B1J9 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484834 PE=4 SV=1)

HSP 1 Score: 1077.4 bits (2785), Expect = 0.0e+00
Identity = 518/534 (97.00%), Postives = 528/534 (98.88%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
           MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSS NLR+FAVAVDPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPL+PSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRL FLGQYV+ELALAEYFL RYPRESPGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
           SLQNLIFPYDDMDK+IRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKRI WQDM+SYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYPLPV DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVVDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of CSPI06G28720 vs. ExPASy TrEMBL
Match: A0A6J1BVK6 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005910 PE=4 SV=1)

HSP 1 Score: 1056.6 bits (2731), Expect = 3.5e-305
Identity = 506/534 (94.76%), Postives = 526/534 (98.50%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
           MELSSSFV+L+SP+PNYSFSSSLTPF  KI+PN+P FPNP+S NLR+FAVAVDPQQELPK
Sbjct: 1   MELSSSFVQLASPTPNYSFSSSLTPFHFKIYPNNPSFPNPTSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKK+VPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKRVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+YGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDNYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRL FLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKR+LPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
           SLQNLIFPYDDMDK+IRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDK+I WQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PV+DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVSDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSY VYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of CSPI06G28720 vs. ExPASy TrEMBL
Match: A0A6J1GEC3 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453180 PE=4 SV=1)

HSP 1 Score: 1053.5 bits (2723), Expect = 2.9e-304
Identity = 503/534 (94.19%), Postives = 523/534 (97.94%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
           MELSS FVKLSSP+PN+SFSSSLTPF+VKIHPN+P   NPSS  LR+FAVAVDPQQELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRL FLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
           SLQNLIFPYDDMDK++RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDK+I WQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PVTDKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLI+YSE+
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSY VYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of CSPI06G28720 vs. ExPASy TrEMBL
Match: A0A6J1IRK8 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477828 PE=4 SV=1)

HSP 1 Score: 1047.3 bits (2707), Expect = 2.1e-302
Identity = 499/534 (93.45%), Postives = 523/534 (97.94%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
           MELSS FVKLSSP+PN+SFSSSLTPF+VKIHPN+P   NPSS +LR+FAVAVDP+QELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVAVDPRQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWM+EYLLEAKQALGYPLEP DSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMEEYLLEAKQALGYPLEPFDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRL FLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
           SLQNLIFPYDDMDK++RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDK+I WQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PVTDKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLI+YSE+
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQ+LHGLSY VYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQSLHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of CSPI06G28720 vs. NCBI nr
Match: XP_004141878.1 (ribonuclease III domain-containing protein RNC1, chloroplastic isoform X1 [Cucumis sativus] >KGN48593.1 hypothetical protein Csa_003755 [Cucumis sativus])

HSP 1 Score: 1093.2 bits (2826), Expect = 0.0e+00
Identity = 533/534 (99.81%), Postives = 533/534 (99.81%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
           MELSSSFVKLSSPS NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK
Sbjct: 1   MELSSSFVKLSSPS-NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
           SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE
Sbjct: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 533

[Close]
BLAST of CSPI06G28720 vs. NCBI nr
Match: XP_038883471.1 (ribonuclease III domain-containing protein RNC1, chloroplastic [Benincasa hispida])

HSP 1 Score: 1083.9 bits (2802), Expect = 0.0e+00
Identity = 522/534 (97.75%), Postives = 531/534 (99.44%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
           MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLR+FAVAVDPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPP+RFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPKRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRL FLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
           SLQNLIFPYDDMDK+IRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKRI WQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of CSPI06G28720 vs. NCBI nr
Match: XP_008440359.1 (PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucumis melo])

HSP 1 Score: 1077.4 bits (2785), Expect = 0.0e+00
Identity = 518/534 (97.00%), Postives = 528/534 (98.88%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
           MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSS NLR+FAVAVDPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPL+PSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRL FLGQYV+ELALAEYFL RYPRESPGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
           SLQNLIFPYDDMDK+IRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKRI WQDM+SYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYPLPV DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVVDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of CSPI06G28720 vs. NCBI nr
Match: XP_022133289.1 (ribonuclease III domain-containing protein RNC1, chloroplastic [Momordica charantia])

HSP 1 Score: 1056.6 bits (2731), Expect = 7.2e-305
Identity = 506/534 (94.76%), Postives = 526/534 (98.50%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
           MELSSSFV+L+SP+PNYSFSSSLTPF  KI+PN+P FPNP+S NLR+FAVAVDPQQELPK
Sbjct: 1   MELSSSFVQLASPTPNYSFSSSLTPFHFKIYPNNPSFPNPTSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKK+VPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKRVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+YGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDNYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRL FLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKR+LPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
           SLQNLIFPYDDMDK+IRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDK+I WQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PV+DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVSDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSY VYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of CSPI06G28720 vs. NCBI nr
Match: XP_023543359.1 (ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1053.9 bits (2724), Expect = 4.6e-304
Identity = 503/534 (94.19%), Postives = 524/534 (98.13%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
           MELSS FVKLSSP+PN+SFSSSLTPF+VKIHPN+P   NPSS +LR+FAVAVDPQQELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRL FLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
           SLQNLIFPYDDMDK++RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDK+I WQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PVTDKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLI+YSE+
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSY VYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of CSPI06G28720 vs. TAIR 10
Match: AT4G37510.1 (Ribonuclease III family protein )

HSP 1 Score: 901.7 bits (2329), Expect = 2.7e-262
Identity = 431/532 (81.02%), Postives = 478/532 (89.85%), Query Frame = 0 

Query: 4   SSSFVKL-SSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKNN 63
           SSS +++ SS +P  SFSSS++ F  K      I       NLR+ A      Q LP+++
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSK---TQSILTKSRFQNLRICASVTAETQGLPRDS 68

Query: 64  PQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCLP 123
           PQRLLKELA+RK AT PKKKVPP+RFILRPPLDDK+LAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69  PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128

Query: 124 SSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKA 183
           SS+LNNADKTW+DEYLLE KQALGY LEPS+S GDDNPAK FDTLLYLAFQHPSC+R +A
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARA 188

Query: 184 RHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAASL 243
           RH+++GHSRL+FLGQYVLELAL E+FLQRYPRESPGPMRERVFALIGKR LPKWIKAASL
Sbjct: 189 RHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASL 248

Query: 244 QNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKECE 303
           QNLIFPYDDMDK+IRK+REPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA EC+
Sbjct: 249 QNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADECQ 308

Query: 304 PRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 363
           PR RRQLEDVDYVSVEFE K++GWQD+ +YKPPEDALFAHPRLFRACVPPGMHRFRGNIW
Sbjct: 309 PRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 368

Query: 364 DYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLE 423
           D+DS+P+VMQ LGYPL + D+I +ITEARNIELGLGLQLCFLHPSKHKFEHPRFC+ERLE
Sbjct: 369 DFDSKPKVMQTLGYPLTMNDRIKEITEARNIELGLGLQLCFLHPSKHKFEHPRFCFERLE 428

Query: 424 YLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQ 483
           Y+GQKIQDI MAERLLMKHLDAPG+WLQ KHRRLLMNKFCGRYLRE+ LH  IIYSE+V 
Sbjct: 429 YVGQKIQDIAMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEEVH 488

Query: 484 DAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 535
           D YE+NRRLRNPATTAVQQA+HGL+Y +YGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 489 DRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 537

[Close]
BLAST of CSPI06G28720 vs. TAIR 10
Match: AT2G48121.2 (LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT4G37510.1). )

HSP 1 Score: 139.8 bits (351), Expect = 6.3e-33
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0 

Query: 458 MNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVR 517
           MNKFCGRYLRE+ LH  IIYSE+V D YE+NRRLRNPATTAVQQA+HGL+Y +YGKPDVR
Sbjct: 1   MNKFCGRYLREKRLHNFIIYSEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVR 60

Query: 518 RIMFEVFDFEQIQPKAV 535
           R+MFEVFDFEQIQPKAV
Sbjct: 61  RLMFEVFDFEQIQPKAV 77

[Close]
BLAST of CSPI06G28720 vs. TAIR 10
Match: AT2G48121.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT4G37510.1). )

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-22
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 478 SEKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 535
           +E+V D YE+NRRLRNPATTAVQQA+HGL+Y +YGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 19  TEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 75

The following BLAST results are available for this feature:
BLAST of CSPI06G28720 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SZV03.9e-26181.02Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis th... [more]
Q8S1Z07.1e-23977.03Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa s... [more]
A6YSL12.1e-23875.14Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=45... [more]
Q5L0Q39.6e-1032.26Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rnc PE=3... [more]
A4IM671.3e-0932.54Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=r... [more]
BLAST of CSPI06G28720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGG70.0e+0099.81RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G494980 P... [more]
A0A1S3B1J90.0e+0097.00ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo O... [more]
A0A6J1BVK63.5e-30594.76ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica char... [more]
A0A6J1GEC32.9e-30494.19ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita... [more]
A0A6J1IRK82.1e-30293.45ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita... [more]
BLAST of CSPI06G28720 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141878.10.0e+0099.81ribonuclease III domain-containing protein RNC1, chloroplastic isoform X1 [Cucum... [more]
XP_038883471.10.0e+0097.75ribonuclease III domain-containing protein RNC1, chloroplastic [Benincasa hispid... [more]
XP_008440359.10.0e+0097.00PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucum... [more]
XP_022133289.17.2e-30594.76ribonuclease III domain-containing protein RNC1, chloroplastic [Momordica charan... [more]
XP_023543359.14.6e-30494.19ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita p... [more]
BLAST of CSPI06G28720 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G37510.12.7e-26281.02Ribonuclease III family protein [more]
AT2G48121.26.3e-3383.12LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonucle... [more]
AT2G48121.11.7e-2282.46BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAI... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000999Ribonuclease III domainSMARTSM00535riboneu5coord: 166..303
e-value: 2.6E-26
score: 103.4
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 167..280
score: 15.142906
IPR000999Ribonuclease III domainCDDcd00593RIBOccoord: 166..297
e-value: 2.25889E-29
score: 110.395
IPR000999Ribonuclease III domainCDDcd00593RIBOccoord: 399..524
e-value: 3.96561E-20
score: 84.5866
IPR036389Ribonuclease III, endonuclease domain superfamilyGENE3D1.10.1520.10Ribonuclease III domaincoord: 163..294
e-value: 5.8E-15
score: 57.1
coord: 391..527
e-value: 2.8E-11
score: 45.2
IPR036389Ribonuclease III, endonuclease domain superfamilySUPERFAMILY69065RNase III domain-likecoord: 399..525
IPR036389Ribonuclease III, endonuclease domain superfamilySUPERFAMILY69065RNase III domain-likecoord: 132..293
NoneNo IPR availablePANTHERPTHR11207:SF21RIBONUCLEASE III DOMAIN-CONTAINING PROTEIN RNC1, CHLOROPLASTICcoord: 1..531
IPR011907Ribonuclease IIIPANTHERPTHR11207RIBONUCLEASE IIIcoord: 1..531

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G28720.1CSPI06G28720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010468 regulation of gene expression
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0006396 RNA processing
biological_process GO:0016075 rRNA catabolic process
cellular_component GO:0005634 nucleus
molecular_function GO:0003725 double-stranded RNA binding
molecular_function GO:0004525 ribonuclease III activity
molecular_function GO:0003723 RNA binding