CSPI06G28440 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G28440
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 24836787 .. 24837089 (+)
RNA-Seq Expression	CSPI06G28440
Synteny	CSPI06G28440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAATCTATATTCTCCGCCCATGCTCAACCCCCGGATTTCTTCTTTCCTTCTAATCATCCTCTTAATTGCCGCTCCACGCTTATTTCTCTATGTAGATTGCAGACCCCTCCGCCCCGGTTCACCCATAGATCGCCACCATGTTCATGATAATGCCTCTGCTCTTCCCCACAACGCCCCCCCGGAAACACAAAAAGCAGCAACGGCGCCCATAGATTCCGGTGACCCGCCGATCGGAGATGAAGGCGGTGGCGTAGCGTTTACTATGGCTTCGGGACCCAGCAGAAAGGGTGCTGGCCAT

mRNA sequence

ATGCCGAATCTATATTCTCCGCCCATGCTCAACCCCCGGATTTCTTCTTTCCTTCTAATCATCCTCTTAATTGCCGCTCCACGCTTATTTCTCTATGTAGATTGCAGACCCCTCCGCCCCGGTTCACCCATAGATCGCCACCATGTTCATGATAATGCCTCTGCTCTTCCCCACAACGCCCCCCCGGAAACACAAAAAGCAGCAACGGCGCCCATAGATTCCGGTGACCCGCCGATCGGAGATGAAGGCGGTGGCGTAGCGTTTACTATGGCTTCGGGACCCAGCAGAAAGGGTGCTGGCCAT

Coding sequence (CDS)

ATGCCGAATCTATATTCTCCGCCCATGCTCAACCCCCGGATTTCTTCTTTCCTTCTAATCATCCTCTTAATTGCCGCTCCACGCTTATTTCTCTATGTAGATTGCAGACCCCTCCGCCCCGGTTCACCCATAGATCGCCACCATGTTCATGATAATGCCTCTGCTCTTCCCCACAACGCCCCCCCGGAAACACAAAAAGCAGCAACGGCGCCCATAGATTCCGGTGACCCGCCGATCGGAGATGAAGGCGGTGGCGTAGCGTTTACTATGGCTTCGGGACCCAGCAGAAAGGGTGCTGGCCAT

Protein sequence

MPNLYSPPMLNPRISSFLLIILLIAAPRLFLYVDCRPLRPGSPIDRHHVHDNASALPHNAPPETQKAATAPIDSGDPPIGDEGGGVAFTMASGPSRKGAGH

Homology

[Close]

BLAST of CSPI06G28440 vs. ExPASy TrEMBL
Match: A0A5D3CR30 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004480 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.1e-34
Identity = 85/101 (84.16%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 1   MPNLYSPPMLNPRISSFLLIILLIAAPRLFLYVDCRPLRPGSPIDRHHVHDNASALPHNA 60
           MPNL SP M N RISSFLLIILL+AAPR FL VDCRPLRPGSPIDRHHVH NASA+PH+ 
Sbjct: 6   MPNLNSPAMPNYRISSFLLIILLMAAPRFFLSVDCRPLRPGSPIDRHHVH-NASAIPHDG 65

Query: 61  PPETQKAATAPIDSGDPPIGDEGGGVAFTMASGPSRKGAGH 102
            PETQKAATA IDSG   IGDEGGGVAFTMASGPSRKGAGH
Sbjct: 66  -PETQKAATALIDSGGRRIGDEGGGVAFTMASGPSRKGAGH 104

[Close]

BLAST of CSPI06G28440 vs. NCBI nr
Match: KAE8647506.1 (hypothetical protein Csa_003725 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 5.2e-47
Identity = 98/101 (97.03%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MPNLYSPPMLNPRISSFLLIILLIAAPRLFLYVDCRPLRPGSPIDRHHVHDNASALPHNA 60
           MPNLYSPPMLNPRISSFLLII LIAAPR FLYVDCRPLRPGSPIDRHHVHDNASALPHNA
Sbjct: 6   MPNLYSPPMLNPRISSFLLIIFLIAAPRFFLYVDCRPLRPGSPIDRHHVHDNASALPHNA 65

Query: 61  PPETQKAATAPIDSGDPPIGDEGGGVAFTMASGPSRKGAGH 102
           PPETQKAATAPIDSG PPIGDEGGGVAFTMASGPSRKGAGH
Sbjct: 66  PPETQKAATAPIDSGAPPIGDEGGGVAFTMASGPSRKGAGH 106

[Close]

BLAST of CSPI06G28440 vs. NCBI nr
Match: TYK12856.1 (hypothetical protein E5676_scaffold255G004480 [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-33
Identity = 85/101 (84.16%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 1   MPNLYSPPMLNPRISSFLLIILLIAAPRLFLYVDCRPLRPGSPIDRHHVHDNASALPHNA 60
           MPNL SP M N RISSFLLIILL+AAPR FL VDCRPLRPGSPIDRHHVH NASA+PH+ 
Sbjct: 6   MPNLNSPAMPNYRISSFLLIILLMAAPRFFLSVDCRPLRPGSPIDRHHVH-NASAIPHDG 65

Query: 61  PPETQKAATAPIDSGDPPIGDEGGGVAFTMASGPSRKGAGH 102
            PETQKAATA IDSG   IGDEGGGVAFTMASGPSRKGAGH
Sbjct: 66  -PETQKAATALIDSGGRRIGDEGGGVAFTMASGPSRKGAGH 104

[Close]

BLAST of CSPI06G28440 vs. NCBI nr
Match: KAG6604156.1 (hypothetical protein SDJN03_04765, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-11
Identity = 53/99 (53.54%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 3   NLYSPPMLNPRISSFLLIILLIAAPRLFLYVDCRPLRPGSPIDRHHVHDNASALPHNAPP 62
           NL SP M   + SS LLI++L+AA R    VDCRPLR GS I+ H   +N SA+      
Sbjct: 5   NLNSPAMPKMKNSSLLLIMVLMAATRFLPLVDCRPLRSGSTIE-HQRTNNGSAI-----S 64

Query: 63  ETQKAATAPIDSGDPPIGDEGGGVAFTMASGPSRKGAGH 102
            ++ AA++P DSG    GD  GGVAFT+ASGPSRKGAGH
Sbjct: 65  SSEIAASSPEDSGSRSSGD--GGVAFTLASGPSRKGAGH 95

[Close]

BLAST of CSPI06G28440 vs. NCBI nr
Match: KAG6595007.1 (hypothetical protein SDJN03_11560, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 49/93 (52.69%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 9   MLNPRISSFLLIILLIAAPRLFLYVDCRPLRPGSPIDRHHVHDNASALPHNAPPETQKAA 68
           M N + SS LLI+ LIAA    L VD RPLR GS    H + +N SAL     PET  AA
Sbjct: 1   MANVKSSSLLLIVALIAATGFVLLVDGRPLRSGSTNQSHPI-NNGSALAEK--PET-AAA 60

Query: 69  TAPIDSGDPPIGDEGGGVAFTMASGPSRKGAGH 102
           +   DS     G  GGGV FT+ SGPSRKGAGH
Sbjct: 61  SPTSDSDIHQSGGGGGGVVFTLVSGPSRKGAGH 89

The following BLAST results are available for this feature:

BLAST of CSPI06G28440 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G28440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CR30	7.1e-34	84.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI06G28440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647506.1	5.2e-47	97.03	hypothetical protein Csa_003725 [Cucumis sativus]	[more]
TYK12856.1	1.5e-33	84.16	hypothetical protein E5676_scaffold255G004480 [Cucumis melo var. makuwa]	[more]
KAG6604156.1	2.1e-11	53.54	hypothetical protein SDJN03_04765, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6595007.1	1.4e-07	52.69	hypothetical protein SDJN03_11560, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI06G28440 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G28440.1	CSPI06G28440.1	mRNA