CSPI06G28020 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G28020
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Precursor of CEP3
Location	Chr6: 24505636 .. 24506217 (-)
RNA-Seq Expression	CSPI06G28020
Synteny	CSPI06G28020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTAATTTCATTTACTACAATTTTTTATTCCCCTCCATAGTTGAGAAAATTCAAAATGGCCGCCACTCGGGTTTTAACTTACTTCTTTCTATTCATCATCTTGTCTCACCATCTCGTTCTTATTGAAGGAAGGAGATTGAAAGTAAAGAAAAATGGGCTACGTTGTGGAAATTGCATGACTCCCACCACTCCAAAAACCATAACCAAATCAGAAGAGGAAGCACAAAAAAGCACTAATAATAAGCTCCACCACAGAATTGCCGATGGCTATGTGGATGCCTTCCGCCCCACCACCCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAAAACCGATAACCCTGTTTATTGGAAGTTCTTATATGCCAAACCCCAAACCTACCTCCTTTCGTTTTTCCTTCAAATTCCCTCTCCTTCCTTTTACCCACCTTTTTTCTTTTCTCCAAATTATTCAATCAAACCACTATAATATGGTTGTCTCAATACCATGTCTCTGGACTCAAAAATGACATCTCTTAAAAACCACGAGATACAAATTCAAAGTGCTTTTGCAGCTTCTATCTCATGCATATCCAACAACG

mRNA sequence

TCTAATTTCATTTACTACAATTTTTTATTCCCCTCCATAGTTGAGAAAATTCAAAATGGCCGCCACTCGGGTTTTAACTTACTTCTTTCTATTCATCATCTTGTCTCACCATCTCGTTCTTATTGAAGGAAGGAGATTGAAAGTAAAGAAAAATGGGCTACGTTGTGGAAATTGCATGACTCCCACCACTCCAAAAACCATAACCAAATCAGAAGAGGAAGCACAAAAAAGCACTAATAATAAGCTCCACCACAGAATTGCCGATGGCTATGTGGATGCCTTCCGCCCCACCACCCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAAAACCGATAACCCTGTTTATTGGAAGTTCTTATATGCCAAACCCCAAACCTACCTCCTTTCGTTTTTCCTTCAAATTCCCTCTCCTTCCTTTTACCCACCTTTTTTCTTTTCTCCAAATTATTCAATCAAACCACTATAATATGGTTGTCTCAATACCATGTCTCTGGACTCAAAAATGACATCTCTTAAAAACCACGAGATACAAATTCAAAGTGCTTTTGCAGCTTCTATCTCATGCATATCCAACAACG

Coding sequence (CDS)

ATGGCCGCCACTCGGGTTTTAACTTACTTCTTTCTATTCATCATCTTGTCTCACCATCTCGTTCTTATTGAAGGAAGGAGATTGAAAGTAAAGAAAAATGGGCTACGTTGTGGAAATTGCATGACTCCCACCACTCCAAAAACCATAACCAAATCAGAAGAGGAAGCACAAAAAAGCACTAATAATAAGCTCCACCACAGAATTGCCGATGGCTATGTGGATGCCTTCCGCCCCACCACCCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAAAACCGATAA

Protein sequence

MAATRVLTYFFLFIILSHHLVLIEGRRLKVKKNGLRCGNCMTPTTPKTITKSEEEAQKSTNNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR*

Homology

[Close]

BLAST of CSPI06G28020 vs. ExPASy Swiss-Prot
Match: B3H5A9 (Precursor of CEP6 OS=Arabidopsis thaliana OX=3702 GN=CEP6 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-04
Identity = 18/25 (72.00%), Postives = 21/25 (84.00%), Query Frame = 0


Query: 69 ADGYVDAFRPTTPGHSPGVGHSIQN 94
          A GY D F PTTPGHSPGVGH+++N
Sbjct: 72 AGGYKDDFEPTTPGHSPGVGHAVKN 96

[Close]

BLAST of CSPI06G28020 vs. ExPASy Swiss-Prot
Match: O80460 (Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.1e-04
Identity = 33/97 (34.02%), Postives = 46/97 (47.42%), Query Frame = 0


Query: 1  MAATRVLTYFFLFIILSHHLVLIEGRRLK----VKKNGLRCGNCMTPTTPKTITKSEEEA 60
          MA   V  + F+F +L+  +  IEGR+L          +R G  +  ++P T        
Sbjct: 1  MATINVYVFAFIF-LLTISVGSIEGRKLTKFTVTTSEEIRAGGSVLSSSPPT-------- 60

Query: 61 QKSTNNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 94
                 L    + G VD FRPT PGHSPG+GHS+ N
Sbjct: 61 -----EPLESPPSHG-VDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of CSPI06G28020 vs. ExPASy TrEMBL
Match: A0A0A0KIB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.9e-45
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAATRVLTYFFLFIILSHHLVLIEGRRLKVKKNGLRCGNCMTPTTPKTITKSEEEAQKST 60
          MAATRVLTYFFLFIILSHHLV+IEGRRLKVKKNGLRCG CMTPTTPKTITKSEEEAQKST
Sbjct: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60

Query: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 95
          NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR
Sbjct: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 94

[Close]

BLAST of CSPI06G28020 vs. ExPASy TrEMBL
Match: A0A5D3CP07 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004920 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.7e-42
Identity = 87/94 (92.55%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MAATRVLTYFFLFIILSHHLVLIEGRRLKVKKNGLRCGNCMTPTTPKTITKSEEEAQKST 60
          MAATRVLTYFFLFIILSHHLV+IEGRRLKV K GLRCG CMTPTTPKTITKS EEAQKS 
Sbjct: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSI 60

Query: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 95
          N KLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR
Sbjct: 61 NKKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 94

[Close]

BLAST of CSPI06G28020 vs. ExPASy TrEMBL
Match: A0A7N2M1D5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.5e-13
Identity = 45/84 (53.57%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 10 FFLFIILSHHLVLIEGRRLKVKKNGLRCGNCMTPTTPKTITKSEEEAQKSTNNKLHHRIA 69
          FFL IIL H L+ IEGR L  +K  L C  C++P T    TK  + A   ++ K      
Sbjct: 10 FFLLIILCHELLCIEGRNLNPRKK-LECAKCLSPNTKGIATKPRKIAASPSSAK----TT 69

Query: 70 DGYVDAFRPTTPGHSPGVGHSIQN 94
          + YVDAFRPTTPGHSPGVGHSIQN
Sbjct: 70 NDYVDAFRPTTPGHSPGVGHSIQN 88

[Close]

BLAST of CSPI06G28020 vs. ExPASy TrEMBL
Match: A0A2G5DS81 (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01500130v1 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.9e-11
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 12 LFIILSHHLVLIEGRRLKVKKNGLRCGNCMTPTTPKTITKSEEEAQKSTNNKLHHRIAD- 71
          L ++LSH ++  EGR LK+KK    C  C +  T +   K E + QK+++  +HH+I   
Sbjct: 14 LVLVLSHEMIHTEGRHLKIKKR-TACVKCSSSNTVR--GKKESDGQKTSD--VHHKITPM 73

Query: 72 -GYVDAFRPTTPGHSPGVGHSIQN 94
           G+V+AFRPTTPGHSPG+GHSIQ+
Sbjct: 74 AGFVEAFRPTTPGHSPGIGHSIQH 92

[Close]

BLAST of CSPI06G28020 vs. ExPASy TrEMBL
Match: M5W563 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G136000 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 10 FFLFIILSHHLVLIEGRRLKVKKNGLRCGNCMTPTTPKTITKSEEEAQKSTNNKLHHRIA 69
          FFL +I SH L+ IEGR L V K+ L+C  C++P  PKT     +E      + L    +
Sbjct: 11 FFLLMIFSHELICIEGRNLNVSKD-LKCVKCLSP-DPKTSAGEVDE-----EHTLVESPS 70

Query: 70 DGYVDAFRPTTPGHSPGVGHSIQN 94
           G+V+AFRPTTPGHSPGVGH++ N
Sbjct: 71 PGHVEAFRPTTPGHSPGVGHAVHN 87

[Close]

BLAST of CSPI06G28020 vs. NCBI nr
Match: KGN48514.1 (hypothetical protein Csa_002922 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 6.0e-45
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAATRVLTYFFLFIILSHHLVLIEGRRLKVKKNGLRCGNCMTPTTPKTITKSEEEAQKST 60
          MAATRVLTYFFLFIILSHHLV+IEGRRLKVKKNGLRCG CMTPTTPKTITKSEEEAQKST
Sbjct: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60

Query: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 95
          NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR
Sbjct: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 94

[Close]

BLAST of CSPI06G28020 vs. NCBI nr
Match: TYK12898.1 (hypothetical protein E5676_scaffold255G004920 [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 1.8e-41
Identity = 87/94 (92.55%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MAATRVLTYFFLFIILSHHLVLIEGRRLKVKKNGLRCGNCMTPTTPKTITKSEEEAQKST 60
          MAATRVLTYFFLFIILSHHLV+IEGRRLKV K GLRCG CMTPTTPKTITKS EEAQKS 
Sbjct: 1  MAATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSI 60

Query: 61 NNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 95
          N KLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR
Sbjct: 61 NKKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 94

[Close]

BLAST of CSPI06G28020 vs. NCBI nr
Match: KAG6604188.1 (Precursor of CEP3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-22
Identity = 65/97 (67.01%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 3  ATRVLTYFFLFIILSHHLVLIEGRRLKVKKNGLRCGNCMTPTTPKTITKSEEEAQKSTNN 62
          AT  LTYFF F+ILSH LVLIE R LKV        N + P TPKTIT S  E Q S NN
Sbjct: 2  ATHFLTYFFAFLILSHQLVLIEARSLKV--------NSINPDTPKTITNS--EPQNSINN 61

Query: 63 ------KLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 94
                KLHHRIADG+VDAFRPTTPGHSPGVGHSIQN
Sbjct: 62 DAKNTKKLHHRIADGFVDAFRPTTPGHSPGVGHSIQN 88

[Close]

BLAST of CSPI06G28020 vs. NCBI nr
Match: PIA46381.1 (hypothetical protein AQUCO_01500130v1 [Aquilegia coerulea])

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 12 LFIILSHHLVLIEGRRLKVKKNGLRCGNCMTPTTPKTITKSEEEAQKSTNNKLHHRIAD- 71
          L ++LSH ++  EGR LK+KK    C  C +  T +   K E + QK+++  +HH+I   
Sbjct: 14 LVLVLSHEMIHTEGRHLKIKKR-TACVKCSSSNTVR--GKKESDGQKTSD--VHHKITPM 73

Query: 72 -GYVDAFRPTTPGHSPGVGHSIQN 94
           G+V+AFRPTTPGHSPG+GHSIQ+
Sbjct: 74 AGFVEAFRPTTPGHSPGIGHSIQH 92

[Close]

BLAST of CSPI06G28020 vs. NCBI nr
Match: ONH96545.1 (hypothetical protein PRUPE_7G136000 [Prunus persica])

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-10
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 10 FFLFIILSHHLVLIEGRRLKVKKNGLRCGNCMTPTTPKTITKSEEEAQKSTNNKLHHRIA 69
          FFL +I SH L+ IEGR L V K+ L+C  C++P  PKT     +E      + L    +
Sbjct: 11 FFLLMIFSHELICIEGRNLNVSKD-LKCVKCLSP-DPKTSAGEVDE-----EHTLVESPS 70

Query: 70 DGYVDAFRPTTPGHSPGVGHSIQN 94
           G+V+AFRPTTPGHSPGVGH++ N
Sbjct: 71 PGHVEAFRPTTPGHSPGVGHAVHN 87

[Close]

BLAST of CSPI06G28020 vs. TAIR 10
Match: AT5G66816.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 9.9e-06
Identity = 18/25 (72.00%), Postives = 21/25 (84.00%), Query Frame = 0


Query: 69 ADGYVDAFRPTTPGHSPGVGHSIQN 94
          A GY D F PTTPGHSPGVGH+++N
Sbjct: 72 AGGYKDDFEPTTPGHSPGVGHAVKN 96

[Close]

BLAST of CSPI06G28020 vs. TAIR 10
Match: AT2G23440.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-05
Identity = 33/97 (34.02%), Postives = 46/97 (47.42%), Query Frame = 0


Query: 1  MAATRVLTYFFLFIILSHHLVLIEGRRLK----VKKNGLRCGNCMTPTTPKTITKSEEEA 60
          MA   V  + F+F +L+  +  IEGR+L          +R G  +  ++P T        
Sbjct: 1  MATINVYVFAFIF-LLTISVGSIEGRKLTKFTVTTSEEIRAGGSVLSSSPPT-------- 60

Query: 61 QKSTNNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 94
                 L    + G VD FRPT PGHSPG+GHS+ N
Sbjct: 61 -----EPLESPPSHG-VDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of CSPI06G28020 vs. TAIR 10
Match: AT3G50610.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 3.2e-04
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 0


Query: 74  DAFRPTTPGHSPGVGHSIQN 94
           D F+PTTPGHSPGVGH+++N
Sbjct: 205 DDFKPTTPGHSPGVGHAVKN 224

The following BLAST results are available for this feature:

BLAST of CSPI06G28020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3H5A9	1.4e-04	72.00	Precursor of CEP6 OS=Arabidopsis thaliana OX=3702 GN=CEP6 PE=1 SV=1	[more]
O80460	3.1e-04	34.02	Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1	[more]

BLAST of CSPI06G28020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIB5	2.9e-45	97.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=3 SV=1	[more]
A0A5D3CP07	8.7e-42	92.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A7N2M1D5	6.5e-13	53.57	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A2G5DS81	7.9e-11	47.62	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01500130v1 PE=3...	[more]
M5W563	1.0e-10	48.81	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G136000 PE=3 SV=1	[more]

BLAST of CSPI06G28020 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48514.1	6.0e-45	97.87	hypothetical protein Csa_002922 [Cucumis sativus]	[more]
TYK12898.1	1.8e-41	92.55	hypothetical protein E5676_scaffold255G004920 [Cucumis melo var. makuwa]	[more]
KAG6604188.1	4.2e-22	67.01	Precursor of CEP3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
PIA46381.1	1.6e-10	47.62	hypothetical protein AQUCO_01500130v1 [Aquilegia coerulea]	[more]
ONH96545.1	2.1e-10	48.81	hypothetical protein PRUPE_7G136000 [Prunus persica]	[more]

BLAST of CSPI06G28020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66816.1	9.9e-06	72.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G23440.1	2.2e-05	34.02	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G50610.1	3.2e-04	75.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..94
None	No IPR available	PANTHER	PTHR33348:SF28	PRECURSOR OF CEP7	coord: 4..93
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 4..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G28020.1	CSPI06G28020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902025	nitrate import
biological_process	GO:1901371	regulation of leaf morphogenesis
biological_process	GO:2000280	regulation of root development
biological_process	GO:0007165	signal transduction
biological_process	GO:0048364	root development
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005179	hormone activity