CSPI06G27760 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G27760
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionNuclear pore complex protein NUP58 isoform X1
LocationChr6: 24337954 .. 24338433 (+)
RNA-Seq ExpressionCSPI06G27760
SyntenyCSPI06G27760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATCAATTCTTATGAAAACTCAAAGAACAAGACTTGTTTTTTCTTGTGATGCAATTGATTCGAGGGATGCTAACGCAATATATCTTCCTAATCTCACGCCATTCTTGGCATTTTTAGTGGCCTGCTGTACAGAATACTTGACTTGCGGTTTCAGGAAACAAGAATATGCCCAAGTGGAATTCTCTTACATTCCAAAGATGGAGTATCTATCGAATATTCTTCTTGGACCGACCTCTGGCTGTGGCTGCTTCACAGCGGCCGTCAGGATTGACAAGTTATACCTCTTAGTTGGTTTATATATCAACGTATCTCTACAGCATGTTTTAACTTTATTTACTTCAATTACTCACATATGCATTACTTGTGTAATTTGTGTACTGAAATTACTAGTAGTGAGTTTTCGACCCTTTTTCACTCTATTTATATTTTCATTTGGTGTCATGTTTCCATTGAAATGCCATTTTGTAATTCATCTG

mRNA sequence

ATGCGATCAATTCTTATGAAAACTCAAAGAACAAGACTTGTTTTTTCTTGTGATGCAATTGATTCGAGGGATGCTAACGCAATATATCTTCCTAATCTCACGCCATTCTTGGCATTTTTAGTGGCCTGCTGTACAGAATACTTGACTTGCGGTTTCAGGAAACAAGAATATGCCCAAGTGGAATTCTCTTACATTCCAAAGATGGAGTATCTATCGAATATTCTTCTTGGACCGACCTCTGGCTGTGGCTGCTTCACAGCGGCCGTCAGGATTGACAAGTTATACCTCTTAGTTGGTTTATATATCAACGTATCTCTACAGCATGTTTTAACTTTATTTACTTCAATTACTCACATATGCATTACTTGTGTAATTTGTGTACTGAAATTACTAGTAGTGAGTTTTCGACCCTTTTTCACTCTATTTATATTTTCATTTGGTGTCATGTTTCCATTGAAATGCCATTTTGTAATTCATCTG

Coding sequence (CDS)

ATGCGATCAATTCTTATGAAAACTCAAAGAACAAGACTTGTTTTTTCTTGTGATGCAATTGATTCGAGGGATGCTAACGCAATATATCTTCCTAATCTCACGCCATTCTTGGCATTTTTAGTGGCCTGCTGTACAGAATACTTGACTTGCGGTTTCAGGAAACAAGAATATGCCCAAGTGGAATTCTCTTACATTCCAAAGATGGAGTATCTATCGAATATTCTTCTTGGACCGACCTCTGGCTGTGGCTGCTTCACAGCGGCCGTCAGGATTGACAAGTTATACCTCTTAGTTGGTTTATATATCAACGTATCTCTACAGCATGTTTTAACTTTATTTACTTCAATTACTCACATATGCATTACTTGTGTAATTTGTGTACTGAAATTACTAGTAGTGAGTTTTCGACCCTTTTTCACTCTATTTATATTTTCATTTGGTGTCATGTTTCCATTGAAATGCCATTTTGTAATTCATCTG

Protein sequence

MRSILMKTQRTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVEFSYIPKMEYLSNILLGPTSGCGCFTAAVRIDKLYLLVGLYINVSLQHVLTLFTSITHICITCVICVLKLLVVSFRPFFTLFIFSFGVMFPLKCHFVIHL
Homology
[Close]
BLAST of CSPI06G27760 vs. ExPASy TrEMBL
Match: A0A0A0KJG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490070 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.4e-30
Identity = 70/89 (78.65%), Postives = 75/89 (84.27%), Query Frame = 0 

Query: 10 RTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVEFSYIPKME 69
          + +  FS DAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFR+QE AQVE  YIPKME
Sbjct: 11 QNKTCFSRDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESFYIPKME 70

Query: 70 YLSNILLGPTSGCGCFTAAVRIDKLYLLV 99
          YLS+I    T G GCFTAAVRI KLYLL+
Sbjct: 71 YLSDINSSWTYGHGCFTAAVRIGKLYLLI 99

[Close]
BLAST of CSPI06G27760 vs. ExPASy TrEMBL
Match: A0A5D3CR89 (Nuclear pore complex protein NUP58 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005110 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.6e-16
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 7   KTQRTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVE 62
           +  + +  FSCD IDSR ANAIYLP LTPFLAFLVACCTEYL CGFRKQEYAQVE
Sbjct: 507 ENSKNKTCFSCDEIDSRGANAIYLPYLTPFLAFLVACCTEYLNCGFRKQEYAQVE 561

[Close]
BLAST of CSPI06G27760 vs. NCBI nr
Match: KAE8647491.1 (hypothetical protein Csa_003749 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-30
Identity = 71/89 (79.78%), Postives = 76/89 (85.39%), Query Frame = 0 

Query: 10 RTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVEFSYIPKME 69
          + +  FS DAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFR+QE AQVE  YIPKME
Sbjct: 11 QNKTCFSRDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESFYIPKME 70

Query: 70 YLSNILLGPTSGCGCFTAAVRIDKLYLLV 99
          YLS+I    T G GCFTAAVRIDKLYLL+
Sbjct: 71 YLSDINSSWTYGHGCFTAAVRIDKLYLLI 99

[Close]
BLAST of CSPI06G27760 vs. NCBI nr
Match: TYK12916.1 (nuclear pore complex protein NUP58 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 7.5e-16
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 7   KTQRTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVE 62
           +  + +  FSCD IDSR ANAIYLP LTPFLAFLVACCTEYL CGFRKQEYAQVE
Sbjct: 507 ENSKNKTCFSCDEIDSRGANAIYLPYLTPFLAFLVACCTEYLNCGFRKQEYAQVE 561

The following BLAST results are available for this feature:
BLAST of CSPI06G27760 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G27760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJG64.4e-3078.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490070 PE=4 SV=1[more]
A0A5D3CR893.6e-1678.18Nuclear pore complex protein NUP58 isoform X1 OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of CSPI06G27760 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647491.11.4e-3079.78hypothetical protein Csa_003749 [Cucumis sativus][more]
TYK12916.17.5e-1678.18nuclear pore complex protein NUP58 isoform X1 [Cucumis melo var. makuwa][more]
BLAST of CSPI06G27760 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G27760.1CSPI06G27760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051028 mRNA transport
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0015031 protein transport
cellular_component GO:0005643 nuclear pore
molecular_function GO:0008139 nuclear localization sequence binding
molecular_function GO:0017056 structural constituent of nuclear pore