CSPI06G27720 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G27720
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 24316503 .. 24316748 (-)
RNA-Seq ExpressionCSPI06G27720
SyntenyCSPI06G27720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGATTAAGTACGGCAGCCACCGTAGGATTCAATTACTTGAGGAAGTGAAGAAAGAGCCAAGTAGCGTTGAAGGAAAGCTGAAGAAAGATGAACAGCAGGTGCGATGTGGTGAGTGAACGGCTCGAGAGAGAAACAAGAGACGCGATAGTTTTGTATGTGTGCGAACAATTTGCGCGCGTTGGGTCGGAGGGTGTGCACTAATTTGCACGGAAGTTGCTAAAGCTGGACCCTCTTTTGGGTGA

mRNA sequence

ATGCTGATTAAGTACGGCAGCCACCGTAGGATTCAATTACTTGAGGAAGTGAAGAAAGAGCCAAGTAGCGTTGAAGGAAAGCTGAAGAAAGATGAACAGCAGGTGCGATGTGGGTGTGCACTAATTTGCACGGAAGTTGCTAAAGCTGGACCCTCTTTTGGGTGA

Coding sequence (CDS)

ATGCTGATTAAGTACGGCAGCCACCGTAGGATTCAATTACTTGAGGAAGTGAAGAAAGAGCCAAGTAGCGTTGAAGGAAAGCTGAAGAAAGATGAACAGCAGGTGCGATGTGGGTGTGCACTAATTTGCACGGAAGTTGCTAAAGCTGGACCCTCTTTTGGGTGA

Protein sequence

MLIKYGSHRRIQLLEEVKKEPSSVEGKLKKDEQQVRCGCALICTEVAKAGPSFG*
Homology
[Close]
BLAST of CSPI06G27720 vs. ExPASy TrEMBL
Match: A0A0A0KL72 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490010 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.9e-21
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1  MLIKYGSHRRIQLLEEVKKEPSSVEGKLKKDEQQVRCGCALICTEVAKAGPSFG 55
          MLIKYGSHRRIQLLEEVKKEPSSVEGKLKKDEQQVRCGCALICT VAKAGPSFG
Sbjct: 1  MLIKYGSHRRIQLLEEVKKEPSSVEGKLKKDEQQVRCGCALICTGVAKAGPSFG 54

[Close]
BLAST of CSPI06G27720 vs. NCBI nr
Match: KGN48486.1 (hypothetical protein Csa_002800 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1  MLIKYGSHRRIQLLEEVKKEPSSVEGKLKKDEQQVRCGCALICTEVAKAGPSFG 55
          MLIKYGSHRRIQLLEEVKKEPSSVEGKLKKDEQQVRCGCALICT VAKAGPSFG
Sbjct: 1  MLIKYGSHRRIQLLEEVKKEPSSVEGKLKKDEQQVRCGCALICTGVAKAGPSFG 54

The following BLAST results are available for this feature:
BLAST of CSPI06G27720 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G27720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL724.9e-2198.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490010 PE=4 SV=1[more]
BLAST of CSPI06G27720 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48486.11.0e-2098.15hypothetical protein Csa_002800 [Cucumis sativus][more]
BLAST of CSPI06G27720 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G27720.1CSPI06G27720.1mRNA