CSPI06G27630 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G27630
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Mitochondrial transcription termination factor family protein
Location	Chr6: 24264660 .. 24264845 (-)
RNA-Seq Expression	CSPI06G27630
Synteny	CSPI06G27630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCATACAAAAAACAGGGCTCTCACAGGGTGGCAAGTTGTTCAAATACGTCGTTTCAATCATTTGTATCTCACGACTTGAAACAATTCATCAACAAGTAGCCAATTTGAAGAAGTTTGGTTTCACAGAAGATGAGACATTTTCGGCGATCTCCCCTTACCTTGACTCTATCAGTCGATAA

mRNA sequence

ATGGATTTCATACAAAAAACAGGGCTCTCACAGGGTGGCAAGTTGTTCAAATACGTCGTTTCAATCATTTGTATCTCACGACTTGAAACAATTCATCAACAAGTAGCCAATTTGAAGAAGTTTGGTTTCACAGAAGATGAGACATTTTCGGCGATCTCCCCTTACCTTGACTCTATCAGTCGATAA

Coding sequence (CDS)

ATGGATTTCATACAAAAAACAGGGCTCTCACAGGGTGGCAAGTTGTTCAAATACGTCGTTTCAATCATTTGTATCTCACGACTTGAAACAATTCATCAACAAGTAGCCAATTTGAAGAAGTTTGGTTTCACAGAAGATGAGACATTTTCGGCGATCTCCCCTTACCTTGACTCTATCAGTCGATAA

Protein sequence

MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSISR*

Homology

[Close]

BLAST of CSPI06G27630 vs. ExPASy TrEMBL
Match: A0A0A0KL55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489920 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.7e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS 60
          MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS
Sbjct: 1  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of CSPI06G27630 vs. ExPASy TrEMBL
Match: A0A5D3CMY9 (Mitochondrial transcription termination factor family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005200 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.1e-16
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI 53
          M+FIQKTGLSQG KLFKYVV+IICISRLETI Q+VANLKKFGFTEDE F+ I
Sbjct: 19 MEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFGFTEDEKFALI 70

[Close]

BLAST of CSPI06G27630 vs. ExPASy TrEMBL
Match: A0A1S3B056 (LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 OS=Cucumis melo OX=3656 GN=LOC103484733 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.1e-16
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI 53
           M+FIQKTGLSQG KLFKYVV+IICISRLETI Q+VANLKKFGFTEDE F+ I
Sbjct: 191 MEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFGFTEDEKFALI 242

[Close]

BLAST of CSPI06G27630 vs. ExPASy TrEMBL
Match: A0A6J1IQK9 (uncharacterized protein LOC111478530 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478530 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 1   MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI--SPYLDS 60
           M +IQKTGL+ G K++KY+V+II ISRLETI Q+VANL+KFGFTEDETF+ +  SP + +
Sbjct: 200 MGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVANLEKFGFTEDETFTLLGRSPLILT 259

[Close]

BLAST of CSPI06G27630 vs. ExPASy TrEMBL
Match: A0A6J1IUG6 (uncharacterized protein LOC111478530 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478530 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 1   MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI--SPYLDS 60
           M +IQKTGL+ G K++KY+V+II ISRLETI Q+VANL+KFGFTEDETF+ +  SP + +
Sbjct: 272 MGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVANLEKFGFTEDETFTLLGRSPLILT 331

[Close]

BLAST of CSPI06G27630 vs. NCBI nr
Match: XP_031742903.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC105436024 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS 60
           MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS
Sbjct: 165 MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS 224

Query: 61  R 62
           R
Sbjct: 225 R 225

[Close]

BLAST of CSPI06G27630 vs. NCBI nr
Match: KGN48476.1 (hypothetical protein Csa_004365 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS 60
          MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS
Sbjct: 1  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of CSPI06G27630 vs. NCBI nr
Match: TYK12925.1 (Mitochondrial transcription termination factor family protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI 53
          M+FIQKTGLSQG KLFKYVV+IICISRLETI Q+VANLKKFGFTEDE F+ I
Sbjct: 19 MEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFGFTEDEKFALI 70

[Close]

BLAST of CSPI06G27630 vs. NCBI nr
Match: XP_008440198.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI 53
           M+FIQKTGLSQG KLFKYVV+IICISRLETI Q+VANLKKFGFTEDE F+ I
Sbjct: 191 MEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFGFTEDEKFALI 242

[Close]

BLAST of CSPI06G27630 vs. NCBI nr
Match: XP_038881817.1 (uncharacterized protein LOC120073205, partial [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 1   MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI--SPYLDS 60
           M++IQKTGLSQG K+FKYVV+II ISRLETI  +VANL+KFGFTEDE F+ +  SP + +
Sbjct: 236 MEYIQKTGLSQGDKMFKYVVTIIGISRLETIRHKVANLEKFGFTEDEIFALLGRSPLILT 295

[Close]

BLAST of CSPI06G27630 vs. TAIR 10
Match: AT1G79220.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 60.8 bits (146), Expect = 4.3e-10
Identity = 25/46 (54.35%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 2   DFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDE 48
           ++I+KTG+++  K+FKYV  II +SR+ETI ++V NL+KFGF+E+E
Sbjct: 224 EYIEKTGVTRESKMFKYVAVIIGVSRMETIEEKVRNLEKFGFSEEE 269

The following BLAST results are available for this feature:

BLAST of CSPI06G27630 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G27630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL55	5.7e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489920 PE=4 SV=1	[more]
A0A5D3CMY9	9.1e-16	84.62	Mitochondrial transcription termination factor family protein OS=Cucumis melo va...	[more]
A0A1S3B056	9.1e-16	84.62	LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 OS=Cucumis melo OX=365...	[more]
A0A6J1IQK9	1.6e-12	62.90	uncharacterized protein LOC111478530 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IUG6	1.6e-12	62.90	uncharacterized protein LOC111478530 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CSPI06G27630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742903.1	1.2e-25	100.00	LOW QUALITY PROTEIN: uncharacterized protein LOC105436024 [Cucumis sativus]	[more]
KGN48476.1	1.2e-25	100.00	hypothetical protein Csa_004365 [Cucumis sativus]	[more]
TYK12925.1	1.9e-15	84.62	Mitochondrial transcription termination factor family protein [Cucumis melo var....	[more]
XP_008440198.1	1.9e-15	84.62	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 [Cucumis me...	[more]
XP_038881817.1	1.1e-12	66.13	uncharacterized protein LOC120073205, partial [Benincasa hispida]	[more]

BLAST of CSPI06G27630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79220.1	4.3e-10	54.35	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 1..58
None	No IPR available	PANTHER	PTHR13068:SF112	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G27630.1	CSPI06G27630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding