CSPI06G27180 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G27180
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Heat shock protein 40
Location	Chr6: 23937323 .. 23937667 (-)
RNA-Seq Expression	CSPI06G27180
Synteny	CSPI06G27180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCCATCTCATCACTTCAATTCGTAGCTAATTGGTTTTGATCCACAATCATTAGTCTGTGATTAAAAACTCTCACCATCCTAAACTCGACCGTCATGGAGAAGAAAAACAACGACGATAAAAAGACTCCGATTGTGCTCAGGTCTGGTGAAACAAAGAAAAAGTCGACGTCCAATTGGTCGCCGGCGATGGATAATATAGTGAAGCTCTCCCCCAAGATGTCATTGGGTGAAGCACTGGATGAACTCGATGCCAAAATCGATGCTATTCTTTATTCTTCTTCACGCAGAACCAAGAGATTGCCAATTTTTGAGGAGATTTGTCCAATTCATTCATCTTCGTGAG

mRNA sequence

TCCCCATCTCATCACTTCAATTCGTAGCTAATTGGTTTTGATCCACAATCATTAGTCTGTGATTAAAAACTCTCACCATCCTAAACTCGACCGTCATGGAGAAGAAAAACAACGACGATAAAAAGACTCCGATTGTGCTCAGGTCTGGTGAAACAAAGAAAAAGTCGACGTCCAATTGGTCGCCGGCGATGGATAATATAGTGAAGCTCTCCCCCAAGATGTCATTGGGTGAAGCACTGGATGAACTCGATGCCAAAATCGATGCTATTCTTTATTCTTCTTCACGCAGAACCAAGAGATTGCCAATTTTTGAGGAGATTTGTCCAATTCATTCATCTTCGTGAG

Coding sequence (CDS)

ATGGAGAAGAAAAACAACGACGATAAAAAGACTCCGATTGTGCTCAGGTCTGGTGAAACAAAGAAAAAGTCGACGTCCAATTGGTCGCCGGCGATGGATAATATAGTGAAGCTCTCCCCCAAGATGTCATTGGGTGAAGCACTGGATGAACTCGATGCCAAAATCGATGCTATTCTTTATTCTTCTTCACGCAGAACCAAGAGATTGCCAATTTTTGAGGAGATTTGTCCAATTCATTCATCTTCGTGA

Protein sequence

MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILYSSSRRTKRLPIFEEICPIHSSS*

Homology

[Close]

BLAST of CSPI06G27180 vs. ExPASy TrEMBL
Match: A0A0A0KKZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486980 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60
          MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY
Sbjct: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60

Query: 61 SSSRRTKRLPIFEEICPIHSSS 83
          SSSRRTKRLPIFEEICPIHSSS
Sbjct: 61 SSSRRTKRLPIFEEICPIHSSS 82

[Close]

BLAST of CSPI06G27180 vs. ExPASy TrEMBL
Match: A0A5D3CRK5 (Heat shock protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005660 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.0e-30
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60
          MEKKNNDDKK PIVLRSGET+KKST+NWSPAMDNIVKLS KM+LG+ALDELD+KIDAILY
Sbjct: 1  MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILY 60

Query: 61 SSSRRTKRLPIFEEICPIHSSS 83
           S R+TKRLPIFEEICPIHSSS
Sbjct: 61 -SPRKTKRLPIFEEICPIHSSS 81

[Close]

BLAST of CSPI06G27180 vs. NCBI nr
Match: KAE8647478.1 (hypothetical protein Csa_003673 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 3.4e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60
          MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY
Sbjct: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60

Query: 61 SSSRRTKRLPIFEEICPIHSSS 83
          SSSRRTKRLPIFEEICPIHSSS
Sbjct: 61 SSSRRTKRLPIFEEICPIHSSS 82

[Close]

BLAST of CSPI06G27180 vs. NCBI nr
Match: TYK12969.1 (heat shock protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 6.2e-30
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60
          MEKKNNDDKK PIVLRSGET+KKST+NWSPAMDNIVKLS KM+LG+ALDELD+KIDAILY
Sbjct: 1  MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILY 60

Query: 61 SSSRRTKRLPIFEEICPIHSSS 83
           S R+TKRLPIFEEICPIHSSS
Sbjct: 61 -SPRKTKRLPIFEEICPIHSSS 81

[Close]

BLAST of CSPI06G27180 vs. NCBI nr
Match: KAG6604244.1 (hypothetical protein SDJN03_04853, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 7.1e-10
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 6  NDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKL-SPKMSLGEALDELDAKIDAILYSSSR 65
          N  K+ PIV+  GET  K T  WSP MD+IV++ S   SL + +DE+D+KID +LY SS+
Sbjct: 11 NSQKRIPIVVNPGETSTKFTM-WSPLMDHIVQISSSNKSLADNVDEIDSKIDRVLY-SSK 70

Query: 66 RTKRLPIFEEICPIHSSS 83
            +RLPIFEE+CP  S+S
Sbjct: 71 NFRRLPIFEEMCPSSSAS 86

The following BLAST results are available for this feature:

BLAST of CSPI06G27180 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G27180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKZ2	1.6e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486980 PE=4 SV=1	[more]
A0A5D3CRK5	3.0e-30	87.80	Heat shock protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25...	[more]

BLAST of CSPI06G27180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647478.1	3.4e-36	100.00	hypothetical protein Csa_003673 [Cucumis sativus]	[more]
TYK12969.1	6.2e-30	87.80	heat shock protein 40 [Cucumis melo var. makuwa]	[more]
KAG6604244.1	7.1e-10	52.56	hypothetical protein SDJN03_04853, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI06G27180 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G27180.1	CSPI06G27180.1	mRNA