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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATCAGAAGAGATATTACAGAGTGGTGAATAACAAGAACAATGGAATTAATAAGAAACAAGAAAAGAACAACAACAATAATAATAGCAATTCATCATGGTCACCAATTTCAGATCTCAAATTACCACAACAACTAGCAAATGGAGATCAAGATGTTCAAACGCAGATCGACAATGTCCTCCACGGCCCCAAAACGACAGCTCGTTTGCTGGTATTCAAACAAATTTGCCCTGATCAAAATTGA mRNA sequence ATGGATCAGAAGAGATATTACAGAGTGGTGAATAACAAGAACAATGGAATTAATAAGAAACAAGAAAAGAACAACAACAATAATAATAGCAATTCATCATGGTCACCAATTTCAGATCTCAAATTACCACAACAACTAGCAAATGGAGATCAAGATGTTCAAACGCAGATCGACAATGTCCTCCACGGCCCCAAAACGACAGCTCGTTTGCTGGTATTCAAACAAATTTGCCCTGATCAAAATTGA Coding sequence (CDS) ATGGATCAGAAGAGATATTACAGAGTGGTGAATAACAAGAACAATGGAATTAATAAGAAACAAGAAAAGAACAACAACAATAATAATAGCAATTCATCATGGTCACCAATTTCAGATCTCAAATTACCACAACAACTAGCAAATGGAGATCAAGATGTTCAAACGCAGATCGACAATGTCCTCCACGGCCCCAAAACGACAGCTCGTTTGCTGGTATTCAAACAAATTTGCCCTGATCAAAATTGA Protein sequence MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNVLHGPKTTARLLVFKQICPDQN*
Homology
BLAST of CSPI06G27160 vs. ExPASy TrEMBL
Match: A0A0A0KHZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486965 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
Query: 1 MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNV 60
MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNV
Sbjct: 1 MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNV 60
Query: 61 LHGPKTTARLLVFKQICPDQN 82
LHGPKTTARLLVFKQICPDQN
Sbjct: 61 LHGPKTTARLLVFKQICPDQN 81
BLAST of CSPI06G27160 vs. NCBI nr
Match: KGN48424.1 (hypothetical protein Csa_003981 [Cucumis sativus]) HSP 1 Score: 161.8 bits (408), Expect = 2.6e-36 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
Query: 1 MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNV 60
MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNV
Sbjct: 1 MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNV 60
Query: 61 LHGPKTTARLLVFKQICPDQN 82
LHGPKTTARLLVFKQICPDQN
Sbjct: 61 LHGPKTTARLLVFKQICPDQN 81
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KHZ5 | 1.2e-36 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486965 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN48424.1 | 2.6e-36 | 100.00 | hypothetical protein Csa_003981 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..40 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 8..40 |
Relationships
The following mRNA feature(s) are a part of this gene:
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