CSPI06G26620 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G26620
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 23454792 .. 23455202 (+)
RNA-Seq Expression	CSPI06G26620
Synteny	CSPI06G26620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATAATCAAATACAGGAATCACAACCCAAGGAAGCAAGGTTCGAAGGCTATACCTCGAGATCACCGCAAAGCAACAGCAAAATTCAACAGTGTCACCGACCCGGCTAAGAATATGGCTAATGAAATGAAACTTCTCAAGAGTCAATTGCCACGTCTTTTAGAAAAGTATAAAAAAAACCCAAAAAACCAACCCAAGTTCTTTGTATCGAGCTCAAGTCCAATGGAGGGAGGAAAGACCAGTCTCTACATAAATAAGAGAAAATGGCGGGGGAAGGGAAAAAAAAGAAGAATTGGGGTAAAAGCAAAACAGATGTCAGTTGTTGTAGCGAAGAGGAAAAGAGCCTCGAGATCTGTGTTCGAAATTGTAAGCGCACGAGCGACAAACAAGAGCGGCGCGGTCCGATAA

mRNA sequence

ATGGGAATAATCAAATACAGGAATCACAACCCAAGGAAGCAAGGTTCGAAGGCTATACCTCGAGATCACCGCAAAGCAACAGCAAAATTCAACAGTGTCACCGACCCGGCTAAGAATATGGCTAATGAAATGAAACTTCTCAAGAGTCAATTGCCACGTCTTTTAGAAAAGTATAAAAAAAACCCAAAAAACCAACCCAAGTTCTTTGTATCGAGCTCAAGTCCAATGGAGGGAGGAAAGACCAGTCTCTACATAAATAAGAGAAAATGGCGGGGGAAGGGAAAAAAAAGAAGAATTGGGGTAAAAGCAAAACAGATGTCAGTTGTTGTAGCGAAGAGGAAAAGAGCCTCGAGATCTGTGTTCGAAATTGTAAGCGCACGAGCGACAAACAAGAGCGGCGCGGTCCGATAA

Coding sequence (CDS)

ATGGGAATAATCAAATACAGGAATCACAACCCAAGGAAGCAAGGTTCGAAGGCTATACCTCGAGATCACCGCAAAGCAACAGCAAAATTCAACAGTGTCACCGACCCGGCTAAGAATATGGCTAATGAAATGAAACTTCTCAAGAGTCAATTGCCACGTCTTTTAGAAAAGTATAAAAAAAACCCAAAAAACCAACCCAAGTTCTTTGTATCGAGCTCAAGTCCAATGGAGGGAGGAAAGACCAGTCTCTACATAAATAAGAGAAAATGGCGGGGGAAGGGAAAAAAAAGAAGAATTGGGGTAAAAGCAAAACAGATGTCAGTTGTTGTAGCGAAGAGGAAAAGAGCCTCGAGATCTGTGTTCGAAATTGTAAGCGCACGAGCGACAAACAAGAGCGGCGCGGTCCGATAA

Protein sequence

MGIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMANEMKLLKSQLPRLLEKYKKNPKNQPKFFVSSSSPMEGGKTSLYINKRKWRGKGKKRRIGVKAKQMSVVVAKRKRASRSVFEIVSARATNKSGAVR*

Homology

[Close]

BLAST of CSPI06G26620 vs. ExPASy TrEMBL
Match: A0A0A0KKU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483510 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MGIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMANEMKLLKSQLP 53
          MGIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMANEMKLLKSQLP
Sbjct: 1  MGIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMANEMKLLKSQLP 52

[Close]

BLAST of CSPI06G26620 vs. NCBI nr
Match: KGN48371.1 (hypothetical protein Csa_002960 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MGIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMANEMKLLKSQLP 53
          MGIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMANEMKLLKSQLP
Sbjct: 1  MGIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMANEMKLLKSQLP 52

The following BLAST results are available for this feature:

BLAST of CSPI06G26620 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G26620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKU3	1.0e-19	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483510 PE=4 SV=1	[more]

BLAST of CSPI06G26620 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48371.1	2.1e-19	100.00	hypothetical protein Csa_002960 [Cucumis sativus]	[more]

BLAST of CSPI06G26620 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 37..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G26620.1	CSPI06G26620.1	mRNA