CSPI06G26470 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G26470
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 23340940 .. 23341451 (+)
RNA-Seq Expression	CSPI06G26470
Synteny	CSPI06G26470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCAGAATAAAAGAACAGAACAACGATCAAAAGGGTATTAAGTAAATGCACAGAGTAATCCCGAGAAACCCTCGTTTCTGAGCAAAGTAGAAAGTTACGAACAGGGTCAACTCAAGAACAGAAACATGGAAAAACTCAGAAATCGCCAGAGACGATGATAAACACCAATCATCAGGGCTATGGAAAAGAAGAGATCGGGAGATTTTGAGAGAAGACCGGAGAAACCGTACCAGAATTGCGAGGAAGAGAGCGGGGGAGAAACGGAGATGGCGAACGAAGGCCGCCGTGAACGAATGAAGGAGAGAGAGAGATGGAGAAGGAGAAAAGAGAAAGGGTGTGAAGCATAGACTACGGAAAAAAGGTCGAATGAAGAGAAATAGGCATTAATAGACGAAGAGAGAGTTGAAGCAAAGCTTCAGCTTCGGTGGGTGCCTTGCTGTGAAAGGAGGTGAAGGGTATACATGTAATTTAACAAAATATTTCTCCCTCCCAAATATTGTAACCCTCTCTG

mRNA sequence

CTGCAGAATAAAAGAACAGAACAACGATCAAAAGGGTATTAAGTAAATGCACAGAGTAATCCCGAGAAACCCTCGTTTCTGAGCAAAGTAGAAAGTTACGAACAGGGTCAACTCAAGAACAGAAACATGGAAAAACTCAGAAATCGCCAGAGACGATGATAAACACCAATCATCAGGGCTATGGAAAAGAAGAGATCGGGAGATTTTGAGAGAAGACCGGAGAAACCGTACCAGAATTGCGAGGAAGAGAGCGGGGGAGAAACGGAGATGGCGAACGAAGGCCGCCGTGAACGAATGAAGGAGAGAGAGAGATGGAGAAGGAGAAAAGAGAAAGGGTGTGAAGCATAGACTACGGAAAAAAGGTCGAATGAAGAGAAATAGGCATTAATAGACGAAGAGAGAGTTGAAGCAAAGCTTCAGCTTCGGTGGGTGCCTTGCTGTGAAAGGAGGTGAAGGGTATACATGTAATTTAACAAAATATTTCTCCCTCCCAAATATTGTAACCCTCTCTG

Coding sequence (CDS)

ATGGAAAAGAAGAGATCGGGAGATTTTGAGAGAAGACCGGAGAAACCGTACCAGAATTGCGAGGAAGAGAGCGGGGGAGAAACGGAGATGGCGAACGAAGGCCGCCGTGAACGAATGAAGGAGAGAGAGAGATGGAGAAGGAGAAAAGAGAAAGGGTGTGAAGCATAG

Protein sequence

MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERERWRRRKEKGCEA*

Homology

[Close]

BLAST of CSPI06G26470 vs. ExPASy TrEMBL
Match: A0A0A0KF64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483365 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERERWRRRKEKGCEA 56
          MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERERWRRRKEKGCEA
Sbjct: 1  MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERERWRRRKEKGCEA 55

[Close]

BLAST of CSPI06G26470 vs. NCBI nr
Match: KGN48355.1 (hypothetical protein Csa_003779 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 3.9e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERERWRRRKEKGCEA 56
          MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERERWRRRKEKGCEA
Sbjct: 1  MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERERWRRRKEKGCEA 55

The following BLAST results are available for this feature:

BLAST of CSPI06G26470 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G26470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF64	1.9e-20	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483365 PE=4 SV=1	[more]

BLAST of CSPI06G26470 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48355.1	3.9e-20	100.00	hypothetical protein Csa_003779 [Cucumis sativus]	[more]

BLAST of CSPI06G26470 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G26470.1	CSPI06G26470.1	mRNA