CSPI06G26340 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G26340
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 23281559 .. 23281867 (+)
RNA-Seq ExpressionCSPI06G26340
SyntenyCSPI06G26340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTTGGAATGGGGATTGGTGGTAGCCTTCAAATTGTTCCAATGGATCTATCGGACAATACGCTTTGTGATTTACTGGTTCAGCATGTGATGAAGCACTGTCAGACTGTACTTCAAATTGACGCCACCTATGAAGGTTTTATAGATGGTTCGATTGAGATTGGGATGAATGGCAAAACATATTCCTTTAAGTTGAAGTTGAAGATCAAGGTTGGTGATGCTTATGTTATTAAGCCCGTTCTGGTTAAAATCTTTTTTCCATTCATTGGCCTTCCAAGCATTGTGTCTTTCGAGTATCTTGAATGA

mRNA sequence

ATGTCTGTTGGAATGGGGATTGGTGGTAGCCTTCAAATTGTTCCAATGGATCTATCGGACAATACGCTTTGTGATTTACTGGTTCAGCATGTGATGAAGCACTGTCAGACTGTACTTCAAATTGACGCCACCTATGAAGGTTTTATAGATGGTTCGATTGAGATTGGGATGAATGGCAAAACATATTCCTTTAAGTTGAAGTTGAAGATCAAGGTTGGTGATGCTTATGTTATTAAGCCCGTTCTGGTTAAAATCTTTTTTCCATTCATTGGCCTTCCAAGCATTGTGTCTTTCGAGTATCTTGAATGA

Coding sequence (CDS)

ATGTCTGTTGGAATGGGGATTGGTGGTAGCCTTCAAATTGTTCCAATGGATCTATCGGACAATACGCTTTGTGATTTACTGGTTCAGCATGTGATGAAGCACTGTCAGACTGTACTTCAAATTGACGCCACCTATGAAGGTTTTATAGATGGTTCGATTGAGATTGGGATGAATGGCAAAACATATTCCTTTAAGTTGAAGTTGAAGATCAAGGTTGGTGATGCTTATGTTATTAAGCCCGTTCTGGTTAAAATCTTTTTTCCATTCATTGGCCTTCCAAGCATTGTGTCTTTCGAGTATCTTGAATGA

Protein sequence

MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE*
Homology
BLAST of CSPI06G26340 vs. ExPASy TrEMBL
Match: A0A0A0KFL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 9.4e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60
           MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK
Sbjct: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60

Query: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 103
           TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE
Sbjct: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

BLAST of CSPI06G26340 vs. ExPASy TrEMBL
Match: A0A0A0KKQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.2e-42
Identity = 82/102 (80.39%), Postives = 97/102 (95.10%), Query Frame = 0

Query: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60
           M++G+GIGG LQIVP+DLSDNTLCDLLVQHV+KHCQ+VLQIDAT+EGFIDGSIEIG+NGK
Sbjct: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60

Query: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 103
           TY  KLKLK+++GDAYV+K VLVK+FFPF+G PS+VSFEYLE
Sbjct: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLE 102

BLAST of CSPI06G26340 vs. ExPASy TrEMBL
Match: A0A0A0KFK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-40
Identity = 79/102 (77.45%), Postives = 95/102 (93.14%), Query Frame = 0

Query: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60
           M++G+GI G LQIVP+DLSDNTLCDLLVQHVMKHCQ+VLQIDAT+EG IDG IEIG+NGK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 103
           TY+ KLK+K+++GDAYV+K VLVK+FFPF+G PS+VSFEYLE
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLE 102

BLAST of CSPI06G26340 vs. ExPASy TrEMBL
Match: A0A5D3BPM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4170G00020 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.2e-22
Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 0

Query: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60
           M++G+ I G LQIV  +  D+ L ++ V  V+ HC+ +L IDA +EG IDG  E+G NGK
Sbjct: 1   MTLGINISGGLQIV--NPLDSLLLEVCVPLVLNHCRAILGIDAQFEGIIDGHFEVGPNGK 60

Query: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLP-SIVSFEYLE 103
           TY+ KLKLK+++GDAYVIK V+VK F+PFIGLP +++SFEY+E
Sbjct: 61  TYTLKLKLKVRIGDAYVIKIVVVKFFWPFIGLPTNLLSFEYVE 101

BLAST of CSPI06G26340 vs. ExPASy TrEMBL
Match: A0A0A0KIX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483235 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.6e-17
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 10  SLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKLKLK 69
           S QI+P+D SD +L +  V  V+ HCQ++ QID  +EG + G  E+G NGKTY+ +LKLK
Sbjct: 8   SKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLK 67

Query: 70  IKVGDAYVIKPVLVKIFFPFIGLPSIVSFE 100
            KVGD YV+K  ++K F P  G PS++SFE
Sbjct: 68  DKVGDRYVLKIGVIKFFCPLFGPPSLLSFE 97

BLAST of CSPI06G26340 vs. NCBI nr
Match: KAE8647454.1 (hypothetical protein Csa_003781 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 8.2e-40
Identity = 78/102 (76.47%), Postives = 95/102 (93.14%), Query Frame = 0

Query: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60
           M++G+GI G LQIVP+DLSDNTLCDLLVQHVMKHCQ+VLQIDAT+EG IDG IEIG+NGK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 103
           TY+ KLK+K+++GDAYV+K VLV++FFPF+G PS+VSFEYLE
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVRLFFPFVGYPSVVSFEYLE 102

BLAST of CSPI06G26340 vs. NCBI nr
Match: KAA0040704.1 (hypothetical protein E6C27_scaffold529G00200 [Cucumis melo var. makuwa] >TYK00712.1 hypothetical protein E5676_scaffold75352G00010 [Cucumis melo var. makuwa] >TYK14273.1 hypothetical protein E5676_scaffold4170G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 4.5e-22
Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 0

Query: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60
           M++G+ I G LQIV  +  D+ L ++ V  V+ HC+ +L IDA +EG IDG  E+G NGK
Sbjct: 1   MTLGINISGGLQIV--NPLDSLLLEVCVPLVLNHCRAILGIDAQFEGIIDGHFEVGPNGK 60

Query: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLP-SIVSFEYLE 103
           TY+ KLKLK+++GDAYVIK V+VK F+PFIGLP +++SFEY+E
Sbjct: 61  TYTLKLKLKVRIGDAYVIKIVVVKFFWPFIGLPTNLLSFEYVE 101

BLAST of CSPI06G26340 vs. NCBI nr
Match: KGN48337.1 (hypothetical protein Csa_004454 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 7.4e-17
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 10  SLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKLKLK 69
           S QI+P+D SD +L +  V  V+ HCQ++ QID  +EG + G  E+G NGKTY+ +LKLK
Sbjct: 8   SKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLK 67

Query: 70  IKVGDAYVIKPVLVKIFFPFIGLPSIVSFE 100
            KVGD YV+K  ++K F P  G PS++SFE
Sbjct: 68  DKVGDRYVLKIGVIKFFCPLFGPPSLLSFE 97

BLAST of CSPI06G26340 vs. NCBI nr
Match: XP_031744690.1 (actin-related protein 2-like [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-06
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 0

Query: 37  TVLQIDATYEGFIDGSIEIGMNGKTYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIV 96
           TVL+I+   E  +D   E+  NGKT++ KLKLK+K+ D+   K  +VKIF+P IGLP+I+
Sbjct: 57  TVLKIEVDIEAVLDVVHEVNSNGKTFTLKLKLKVKLLDSVDTKIAVVKIFWPPIGLPTIL 116

Query: 97  SFEYLE 103
           SF  +E
Sbjct: 117 SFLCVE 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KFL59.4e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1[more]
A0A0A0KKQ87.2e-4280.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1[more]
A0A0A0KFK81.4e-4077.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1[more]
A0A5D3BPM42.2e-2255.34Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KIX93.6e-1751.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483235 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8647454.18.2e-4076.47hypothetical protein Csa_003781 [Cucumis sativus][more]
KAA0040704.14.5e-2255.34hypothetical protein E6C27_scaffold529G00200 [Cucumis melo var. makuwa] >TYK0071... [more]
KGN48337.17.4e-1751.11hypothetical protein Csa_004454 [Cucumis sativus][more]
XP_031744690.13.5e-0648.48actin-related protein 2-like [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G26340.1CSPI06G26340.1mRNA