CSPI06G26210 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G26210
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 23193381 .. 23193946 (+)
RNA-Seq Expression	CSPI06G26210
Synteny	CSPI06G26210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGGAGTGAAGAGTTAAGCAGAGATCATAGAAGTTTGTGAGAGAATTAGAATTATAGATATCTAATATATATATCATATCAAATTAGCTTATAATTTGAAAGATGACTCTTGGAATCGGGATTGGTGGTGGCATTCAAATTGGAGCTCCTTCAGTGGACAAATCGGTTATAGACGTACTTGTTCCTCTTGTGATTAACCATTGTCTGACTGTACTTCAGATTGAGGCCGAACTTGATGGTATTATAAGTTGTGATATTGAGGGTGGGCTAGCTGGCAAAACATATATCCTTCAGTTGAGGCTAAAGTGCAGGGTTGGTAATATTTTTGTTATTAAAATCGTTCTGGTTAAAATCTTTTGGGCATTGAATGCCATTCCACTGGTTGTGTCTTTCGAGTATCTGGAAGAAATCAACATCTAGAAACCGTGAAATCATGCTATGTATAATAAAAATGGTGCTTTCTTATGCATCATTTCCATCTCTCTTACCTATCTATCAATAAATATATAAAACTGGTCTCTCTTTTAACAATGCAATAGGAGGATATTCAGTTTATATTATATTT

mRNA sequence

AGAGGAGTGAAGAGTTAAGCAGAGATCATAGAAGTTTGTGAGAGAATTAGAATTATAGATATCTAATATATATATCATATCAAATTAGCTTATAATTTGAAAGATGACTCTTGGAATCGGGATTGGTGGTGGCATTCAAATTGGAGCTCCTTCAGTGGACAAATCGGTTATAGACGTACTTGTTCCTCTTGTGATTAACCATTGTCTGACTGTACTTCAGATTGAGGCCGAACTTGATGGTATTATAAGTTGTGATATTGAGGGTGGGCTAGCTGGCAAAACATATATCCTTCAGTTGAGGCTAAAGTGCAGGGTTGGTAATATTTTTGTTATTAAAATCGTTCTGGTTAAAATCTTTTGGGCATTGAATGCCATTCCACTGGTTGTGTCTTTCGAGTATCTGGAAGAAATCAACATCTAGAAACCGTGAAATCATGCTATGTATAATAAAAATGGTGCTTTCTTATGCATCATTTCCATCTCTCTTACCTATCTATCAATAAATATATAAAACTGGTCTCTCTTTTAACAATGCAATAGGAGGATATTCAGTTTATATTATATTT

Coding sequence (CDS)

ATGACTCTTGGAATCGGGATTGGTGGTGGCATTCAAATTGGAGCTCCTTCAGTGGACAAATCGGTTATAGACGTACTTGTTCCTCTTGTGATTAACCATTGTCTGACTGTACTTCAGATTGAGGCCGAACTTGATGGTATTATAAGTTGTGATATTGAGGGTGGGCTAGCTGGCAAAACATATATCCTTCAGTTGAGGCTAAAGTGCAGGGTTGGTAATATTTTTGTTATTAAAATCGTTCTGGTTAAAATCTTTTGGGCATTGAATGCCATTCCACTGGTTGTGTCTTTCGAGTATCTGGAAGAAATCAACATCTAG

Protein sequence

MTLGIGIGGGIQIGAPSVDKSVIDVLVPLVINHCLTVLQIEAELDGIISCDIEGGLAGKTYILQLRLKCRVGNIFVIKIVLVKIFWALNAIPLVVSFEYLEEINI*

Homology

[Close]

BLAST of CSPI06G26210 vs. ExPASy TrEMBL
Match: A0A0A0KKQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.9e-21
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 1   MTLGIGIGGGIQIGAPSV-DKSVIDVLVPLVINHCLTVLQIEAELDGIISCDIEGGLAGK 60
           MTLGIGIGGG+QI    + D ++ D+LV  VI HC +VLQI+A  +G I   IE GL GK
Sbjct: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60

Query: 61  TYILQLRLKCRVGNIFVIKIVLVKIFWALNAIPLVVSFEYLEEINI 106
           TYIL+L+LK R+G+ +V+KIVLVK+F+     P VVSFEYLEEI+I
Sbjct: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

[Close]

BLAST of CSPI06G26210 vs. ExPASy TrEMBL
Match: A0A0A0KFK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.7e-20
Identity = 59/106 (55.66%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 1   MTLGIGIGGGIQIGAPSV-DKSVIDVLVPLVINHCLTVLQIEAELDGIISCDIEGGLAGK 60
           MTLGIGI GG+QI    + D ++ D+LV  V+ HC +VLQI+A  +G+I   IE GL GK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  TYILQLRLKCRVGNIFVIKIVLVKIFWALNAIPLVVSFEYLEEINI 106
           TY L+L++K R+G+ +V+KIVLVK+F+     P VVSFEYLEEINI
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

[Close]

BLAST of CSPI06G26210 vs. ExPASy TrEMBL
Match: A0A5D3BPM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4170G00020 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 57/106 (53.77%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 1   MTLGIGIGGGIQIGAPSVDKSVIDVLVPLVINHCLTVLQIEAELDGIISCDIEGGLAGKT 60
           MTLGI I GG+QI  P +D  +++V VPLV+NHC  +L I+A+ +GII    E G  GKT
Sbjct: 1   MTLGINISGGLQIVNP-LDSLLLEVCVPLVLNHCRAILGIDAQFEGIIDGHFEVGPNGKT 60

Query: 61  YILQLRLKCRVGNIFVIKIVLVKIFWALNAIPL-VVSFEYLEEINI 106
           Y L+L+LK R+G+ +VIKIV+VK FW    +P  ++SFEY+EEINI
Sbjct: 61  YTLKLKLKVRIGDAYVIKIVVVKFFWPFIGLPTNLLSFEYVEEINI 105

[Close]

BLAST of CSPI06G26210 vs. ExPASy TrEMBL
Match: A0A0A0KFL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.4e-16
Identity = 52/102 (50.98%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1   MTLGIGIGGGIQIGAPSV-DKSVIDVLVPLVINHCLTVLQIEAELDGIISCDIEGGLAGK 60
           M++G+GIGG +QI    + D ++ D+LV  V+ HC TVLQI+A  +G I   IE G+ GK
Sbjct: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60

Query: 61  TYILQLRLKCRVGNIFVIKIVLVKIFWALNAIPLVVSFEYLE 102
           TY  +L+LK +VG+ +VIK VLVKIF+    +P +VSFEYLE
Sbjct: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

[Close]

BLAST of CSPI06G26210 vs. ExPASy TrEMBL
Match: A0A0A0KIX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483235 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.2e-11
Identity = 40/87 (45.98%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 19  DKSVIDVLVPLVINHCLTVLQIEAELDGIISCDIEGGLAGKTYILQLRLKCRVGNIFVIK 78
           D+S+I+  VPLVINHC ++ QI+ + +GI+    E G  GKTY L+L+LK +VG+ +V+K
Sbjct: 18  DRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDKVGDRYVLK 77

Query: 79  IVLVKIFWALNAIPLVVSFEYLEEINI 106
           I ++K F  L   P ++SFE  +EIN+
Sbjct: 78  IGVIKFFCPLFGPPSLLSFECSKEINV 104

[Close]

BLAST of CSPI06G26210 vs. NCBI nr
Match: KAE8647454.1 (hypothetical protein Csa_003781 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 58/106 (54.72%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 1   MTLGIGIGGGIQIGAPSV-DKSVIDVLVPLVINHCLTVLQIEAELDGIISCDIEGGLAGK 60
           MTLGIGI GG+QI    + D ++ D+LV  V+ HC +VLQI+A  +G+I   IE GL GK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  TYILQLRLKCRVGNIFVIKIVLVKIFWALNAIPLVVSFEYLEEINI 106
           TY L+L++K R+G+ +V+KIVLV++F+     P VVSFEYLEEINI
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVRLFFPFVGYPSVVSFEYLEEINI 106

[Close]

BLAST of CSPI06G26210 vs. NCBI nr
Match: KAA0040704.1 (hypothetical protein E6C27_scaffold529G00200 [Cucumis melo var. makuwa] >TYK00712.1 hypothetical protein E5676_scaffold75352G00010 [Cucumis melo var. makuwa] >TYK14273.1 hypothetical protein E5676_scaffold4170G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-19
Identity = 57/106 (53.77%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 1   MTLGIGIGGGIQIGAPSVDKSVIDVLVPLVINHCLTVLQIEAELDGIISCDIEGGLAGKT 60
           MTLGI I GG+QI  P +D  +++V VPLV+NHC  +L I+A+ +GII    E G  GKT
Sbjct: 1   MTLGINISGGLQIVNP-LDSLLLEVCVPLVLNHCRAILGIDAQFEGIIDGHFEVGPNGKT 60

Query: 61  YILQLRLKCRVGNIFVIKIVLVKIFWALNAIPL-VVSFEYLEEINI 106
           Y L+L+LK R+G+ +VIKIV+VK FW    +P  ++SFEY+EEINI
Sbjct: 61  YTLKLKLKVRIGDAYVIKIVVVKFFWPFIGLPTNLLSFEYVEEINI 105

[Close]

BLAST of CSPI06G26210 vs. NCBI nr
Match: KGN48337.1 (hypothetical protein Csa_004454 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 40/87 (45.98%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 19  DKSVIDVLVPLVINHCLTVLQIEAELDGIISCDIEGGLAGKTYILQLRLKCRVGNIFVIK 78
           D+S+I+  VPLVINHC ++ QI+ + +GI+    E G  GKTY L+L+LK +VG+ +V+K
Sbjct: 18  DRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDKVGDRYVLK 77

Query: 79  IVLVKIFWALNAIPLVVSFEYLEEINI 106
           I ++K F  L   P ++SFE  +EIN+
Sbjct: 78  IGVIKFFCPLFGPPSLLSFECSKEINV 104

The following BLAST results are available for this feature:

BLAST of CSPI06G26210 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G26210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKQ8	1.9e-21	58.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1	[more]
A0A0A0KFK8	2.7e-20	55.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1	[more]
A0A5D3BPM4	1.4e-19	53.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KFL5	5.4e-16	50.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1	[more]
A0A0A0KIX9	5.2e-11	45.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483235 PE=4 SV=1	[more]

BLAST of CSPI06G26210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647454.1	1.6e-19	54.72	hypothetical protein Csa_003781 [Cucumis sativus]	[more]
KAA0040704.1	2.8e-19	53.77	hypothetical protein E6C27_scaffold529G00200 [Cucumis melo var. makuwa] >TYK0071...	[more]
KGN48337.1	1.1e-10	45.98	hypothetical protein Csa_004454 [Cucumis sativus]	[more]

BLAST of CSPI06G26210 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G26210.1	CSPI06G26210.1	mRNA