CSPI06G25690 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G25690
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionBric-a-brac protein
LocationChr6: 22804134 .. 22806992 (-)
RNA-Seq ExpressionCSPI06G25690
SyntenyCSPI06G25690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGATGAGGAAACCTTCTTAAGGAATAGGGCCGATGTATAGCGGCAAAGTGCAACTATTGAGGAAAGATGGGACTGTGGCTGAACCCTCTCCCTCCCGGTCAGCTAAGAAGTAGCGCCTGCGTCTTCATCGTCGGACTTTCCCTCTTCGCTGCTGGAGCTCACCTCTCTTACCTCAACATAGGCCCTCAGCAAGCTCGAACCAAAGCTCGTTATGATTTTGTCAAAGAGCGTTTGAGGAGGCGTCGCGACGGTTAACCTGCTTCGACTTGTTCCCGGTGAGCATTCAATCTCACCTCATTTTCTCAGAGTTTCAATTTTTCTCTCAGGGATCCATCATATTTGTGGATTATTACAGTAATTTACTAAATCGTTCTTGATTCTTTGGCAATTTGACGAGTTTGTAAAAGGATTGGAATTGTCTTAATCTTGACTTGTTTTCTTTCTTCTATACGAATCGGACGTTTTTTCGTGTCCGTCTTACCGTCCCATCTTTTTAGTTCTCGTTTTCGAGCATAGCGAATTCAATCACTTTCGTTATCGGTGTAGTTCATCTCTGTTTCTCCGTTTCGCGACTTGGCCTTTGGGTTTAATTGTTGAACAACACGATCTCAGTACTTGAAAGCCAATTACTGTATATGATCGACGATCAATTTGTAAGACCTCATTTTCGTAGGAATCCAATTTTGTACACCTAAGATCCTCTGATTTCCCCACTTCAAGAACAGGAGCATGAAATTATGGAGTGCCTTTGATCCCCTAGGTCTCAATTTCTGACCTGGGGGAAGGGCTTCCTTGGTCTCTTGTTAAGGTTATTAAATTTACCTTTCTTACCTTTCACCATATATCCTTGTGTTAGTTCCACATACATTTCTTCCAGTTTGCCATTCAAGGATGATAGCCTGACCATCAAGTTGAAATGCATTTTGTCCCGATTGTTCTACTAAGATAAGAACAGTTCTTAGATGAGTCTCATGGTCTGTGTTTTCGTTTGTTTGTTAGAAATCAGAATTTTCATTTGTGAACAAGAGACTAAACATTTCATTGAAAATATGAAAAGATACTAATGCTCAAAGGATACAAACTAAACTCCGAAATGATAAATGAACAAACAACAGAGAAGCGATTCCACAAACCGGAACGAATGAAATACTTACAAAGTTAACGGAAGAGCTTATACATTATCAAGTAATGGTGTGAACATCGAGTTACCTATAGAAGTTGGAGTAGATGACCGCAAGCTCCAACGAGTGTTTTTGAAAAATTGAAATCTTCCATTTGAGTAACTTTATTTGACAAAGCTTCTCCTTTCAAATTCAATTCAATTCTTCGTCAAGATGTGCTATCTATGGCGACAAGGTAAGACTAAGTACTGAAGTAGACTCCATAAGAAATGTTGAAAATAAAATTCAGAGAGAATCCTTAGAAATCGAGTTTGCATCAAGGGAAAGAAGGAATTATGAGGGGCATACTGATAGCAAGCTCAACAAAAAAGAGAACCCAAGAACTAATCACATAAAGCAACCCCAATCCAACAGAATCATACCAAAGTCACAGTTACAATAAGACGTAGTAATCAAGCTATACTCGAGCCCCTCCAATGATGGGAAGGAAGTAGGTGTCCTAAACCTTCCAGTGGTTCTTATCAAGACATTTGGTACGGCCTTGAGCACCCACTCAAAAGGGGTGTAGACCATACTTACTCATAATAACTTGACGCCAAAAAGCATCAGACTCCATGAAAAACCACCTAGCCGAGGGCTGGTTTTGAAGCTTTCATGTTTTCTATGTTGGGAATTTCTTCCTCCTAAGTTTAAATTCGAACGTTTGCTACAACTTCTAGGTTCTGTGCTTCGTAAGTGAACTTAGATACTGAGGTAGTGTTTCAGTAACCTTTCTTTGCATGATTTTGAAATAAGGATTCATGCAAATAAAAGGAGGTTCATACGAGTATGAAAAAGAAAAATTGAAACAAAGGTAGAAAGAGCTACCATCATTTGATTAATTAAAGCAATCATTTGAAGTTTAGACGTTACAAATAAGAAGACTAGTAAGAGAACGGACCATCAAGAGCATGGGCTTTTGCCATGGATTTATGTTAAGCCTCATCTTAAAAGAACGAATTTGTTTGGGATACTTGTTCTGCTATTTGGGATACAACTTGATAGAAAGGTGGGTAGAGTTCATTAGTGATTAAGTGACTCTTCTGTATGTAAAGATTAAACTGAAAAGAAGTATATTTCTGAAGTAGGTTGTAACACTAAACACCTACACGAAATTTCAATGGGATGGGTGAAATATGCTTCTAGTTGAGATTTTAAATCCCTTGAGATTTTCTTTTTCCTTTTTCCTTTTGATTTTTATATTATAGTCTTGGTCGAGCCTTACATGTGTGACTTTTTGTTTTCTTTTACTTAAAGAGTAATCACTAGCAAAGTATTTAGTTTGAGAAGATTATTTGACAGTCAGATGTTCATTCTTTTGTCTATAAAACTTGTTTTGCTTAGTTTATAGAAAGTTTCAGGGTAGGTATTTATGATTTTAGTCAACAAAGAAGATCTAACGTTGAAGAACAATAATACAAAAGTATGAATTTTGAAGATGGAACTGAGTTTTCCGAGCACGAGGCGCCATAAAATAACTCTAGATGTGATCTTCAGGATGTATTTAGTTGACTATGAGGCGTCTCGGAAAGAGGAGATGCAAAGCAACCAATGGAGACATATTGTAATGGACTTATAAGCTTCAATTTTCTCTTCATTTCTTTTTGTTACCTTTCTTTAGCGGTAGATTTGTATCTCAACTGAGTTGTTCTCATGTATAGCATTTCTATAAACTCTTTTGTATTACTTAACTTCAGTT

mRNA sequence

GGATGAGGAAACCTTCTTAAGGAATAGGGCCGATGTATAGCGGCAAAGTGCAACTATTGAGGAAAGATGGGACTGTGGCTGAACCCTCTCCCTCCCGGTCAGCTAAGAAGTAGCGCCTGCGTCTTCATCGTCGGACTTTCCCTCTTCGCTGCTGGAGCTCACCTCTCTTACCTCAACATAGGCCCTCAGCAAGCTCGAACCAAAGCTCGTTATGATTTTGTCAAAGAGCGTTTGAGGAGGCGTCGCGACGGTTAACCTGCTTCGACTTGTTCCCGGATGTATTTAGTTGACTATGAGGCGTCTCGGAAAGAGGAGATGCAAAGCAACCAATGGAGACATATTGTAATGGACTTATAAGCTTCAATTTTCTCTTCATTTCTTTTTGTTACCTTTCTTTAGCGGTAGATTTGTATCTCAACTGAGTTGTTCTCATGTATAGCATTTCTATAAACTCTTTTGTATTACTTAACTTCAGTT

Coding sequence (CDS)

ATGGGACTGTGGCTGAACCCTCTCCCTCCCGGTCAGCTAAGAAGTAGCGCCTGCGTCTTCATCGTCGGACTTTCCCTCTTCGCTGCTGGAGCTCACCTCTCTTACCTCAACATAGGCCCTCAGCAAGCTCGAACCAAAGCTCGTTATGATTTTGTCAAAGAGCGTTTGAGGAGGCGTCGCGACGGTTAA

Protein sequence

MGLWLNPLPPGQLRSSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRRDG*
Homology
[Close]
BLAST of CSPI06G25690 vs. ExPASy TrEMBL
Match: A0A0A0KEZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454330 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 1  MGLWLNPLPPGQLRSSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60
          MGLWLNPLP GQLR+SACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR
Sbjct: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60

Query: 61 DG 63
          DG
Sbjct: 61 DG 62

[Close]
BLAST of CSPI06G25690 vs. ExPASy TrEMBL
Match: A0A5D3C6A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001620 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.1e-22
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1  MGLWLNPLPPGQLRSSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60
          MGLWLNPLP GQLR+SAC FIVG+SLFAAGAHLSYLNIGPQQARTKAR DFV+ERLR+R 
Sbjct: 1  MGLWLNPLPRGQLRTSACFFIVGVSLFAAGAHLSYLNIGPQQARTKARDDFVRERLRKRH 60

Query: 61 DG 63
          DG
Sbjct: 61 DG 62

[Close]
BLAST of CSPI06G25690 vs. ExPASy TrEMBL
Match: A0A1S4E3S6 (uncharacterized protein LOC103500918 OS=Cucumis melo OX=3656 GN=LOC103500918 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.1e-22
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1  MGLWLNPLPPGQLRSSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60
          MGLWLNPLP GQLR+SAC FIVG+SLFAAGAHLSYLNIGPQQARTKAR DFV+ERLR+R 
Sbjct: 1  MGLWLNPLPRGQLRTSACFFIVGVSLFAAGAHLSYLNIGPQQARTKARDDFVRERLRKRH 60

Query: 61 DG 63
          DG
Sbjct: 61 DG 62

[Close]
BLAST of CSPI06G25690 vs. ExPASy TrEMBL
Match: A0A6J1HI96 (uncharacterized protein LOC111463226 OS=Cucurbita moschata OX=3662 GN=LOC111463226 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-17
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1  MGLWLNPLPPGQLRSSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRR 60
          MG WLNPLP GQL +SAC F+ G SLFA GA+LSY+NIGPQQARTKAR DFV+ERLRRR
Sbjct: 1  MGRWLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRRR 59

[Close]
BLAST of CSPI06G25690 vs. ExPASy TrEMBL
Match: A0A6J1BSA7 (uncharacterized protein LOC111005249 OS=Momordica charantia OX=3673 GN=LOC111005249 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-16
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 1  MGLWLNPLPPGQLRSSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRR 60
          MGLWL+PLP GQL +SAC F+ G+S FA GA+ SYLNI PQQARTKAR DFVKERLR+R
Sbjct: 1  MGLWLDPLPRGQLATSACFFVAGVSFFAVGAYFSYLNIAPQQARTKARDDFVKERLRKR 59

[Close]
BLAST of CSPI06G25690 vs. NCBI nr
Match: XP_011657716.1 (uncharacterized protein LOC105435887 [Cucumis sativus] >XP_011657717.1 uncharacterized protein LOC105435887 [Cucumis sativus] >XP_011657718.1 uncharacterized protein LOC105435887 [Cucumis sativus] >KGN48285.1 hypothetical protein Csa_004061 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 3.5e-25
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 1  MGLWLNPLPPGQLRSSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60
          MGLWLNPLP GQLR+SACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR
Sbjct: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60

Query: 61 DG 63
          DG
Sbjct: 61 DG 62

[Close]
BLAST of CSPI06G25690 vs. NCBI nr
Match: XP_016902886.1 (PREDICTED: uncharacterized protein LOC103500918 [Cucumis melo] >KAA0025233.1 hypothetical protein E6C27_scaffold541G00820 [Cucumis melo var. makuwa] >TYK07433.1 hypothetical protein E5676_scaffold202G001620 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.0e-21
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1  MGLWLNPLPPGQLRSSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRR 60
          MGLWLNPLP GQLR+SAC FIVG+SLFAAGAHLSYLNIGPQQARTKAR DFV+ERLR+R 
Sbjct: 1  MGLWLNPLPRGQLRTSACFFIVGVSLFAAGAHLSYLNIGPQQARTKARDDFVRERLRKRH 60

Query: 61 DG 63
          DG
Sbjct: 61 DG 62

[Close]
BLAST of CSPI06G25690 vs. NCBI nr
Match: XP_038880929.1 (uncharacterized protein LOC120072605 [Benincasa hispida] >XP_038880930.1 uncharacterized protein LOC120072605 [Benincasa hispida])

HSP 1 Score: 97.8 bits (242), Expect = 3.5e-17
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 0 

Query: 1  MGLWLNPLPPGQLRSSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRR 60
          MGLWLNPLP GQL +SAC F+ G+S FAAGA+LS+LNI PQQARTKAR DFVKERLR+R
Sbjct: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKR 59

[Close]
BLAST of CSPI06G25690 vs. NCBI nr
Match: XP_022962859.1 (uncharacterized protein LOC111463226 [Cucurbita moschata])

HSP 1 Score: 97.8 bits (242), Expect = 3.5e-17
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1  MGLWLNPLPPGQLRSSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRR 60
          MG WLNPLP GQL +SAC F+ G SLFA GA+LSY+NIGPQQARTKAR DFV+ERLRRR
Sbjct: 1  MGRWLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRRR 59

[Close]
BLAST of CSPI06G25690 vs. NCBI nr
Match: XP_023517718.1 (uncharacterized protein LOC111781390 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.7 bits (239), Expect = 7.8e-17
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 1  MGLWLNPLPPGQLRSSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRR 60
          MGLWLNPLP GQL +SAC F+ G S F  GA+LSY+N+GPQQARTKAR DFV+ERLRRR
Sbjct: 1  MGLWLNPLPRGQLGTSACYFVAGFSFFVVGAYLSYVNVGPQQARTKARSDFVRERLRRR 59

[Close]
BLAST of CSPI06G25690 vs. TAIR 10
Match: AT3G11591.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 8.3e-09
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 0 

Query: 12 QLRSSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRRRD 62
          QL  S   F  G+SLF AGA+LS  NI PQQAR KAR DFVK+R+R+  D
Sbjct: 13 QLVVSVGFFAAGVSLFVAGAYLSLANISPQQARVKARNDFVKDRIRKWLD 62

The following BLAST results are available for this feature:
BLAST of CSPI06G25690 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G25690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEZ91.7e-2596.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454330 PE=4 SV=1[more]
A0A5D3C6A05.1e-2287.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4E3S65.1e-2287.10uncharacterized protein LOC103500918 OS=Cucumis melo OX=3656 GN=LOC103500918 PE=... [more]
A0A6J1HI961.7e-1777.97uncharacterized protein LOC111463226 OS=Cucurbita moschata OX=3662 GN=LOC1114632... [more]
A0A6J1BSA71.9e-1674.58uncharacterized protein LOC111005249 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
BLAST of CSPI06G25690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011657716.13.5e-2596.77uncharacterized protein LOC105435887 [Cucumis sativus] >XP_011657717.1 uncharact... [more]
XP_016902886.11.0e-2187.10PREDICTED: uncharacterized protein LOC103500918 [Cucumis melo] >KAA0025233.1 hyp... [more]
XP_038880929.13.5e-1777.97uncharacterized protein LOC120072605 [Benincasa hispida] >XP_038880930.1 unchara... [more]
XP_022962859.13.5e-1777.97uncharacterized protein LOC111463226 [Cucurbita moschata][more]
XP_023517718.17.8e-1774.58uncharacterized protein LOC111781390 [Cucurbita pepo subsp. pepo][more]
BLAST of CSPI06G25690 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G11591.18.3e-0960.00unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G25690.1CSPI06G25690.1mRNA
CSPI06G25690.2CSPI06G25690.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane