CSPI06G24930 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G24930
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RNase H domain-containing protein
Location	Chr6: 22218295 .. 22218594 (-)
RNA-Seq Expression	CSPI06G24930
Synteny	CSPI06G24930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAAAAATCTTGGCCGCCATTGGGTGCTATCGTGAATTCAACGAGACTAGCTGGCGGAATTGCGGCGGCGCCGTTGCACTCGACTTGGCCAATGCCGCAATCGGCGGTTGCGCAAGAGAATTTTCCATTTGGATCTGTGGAACAGAGAGTTCGAGCCCAGAATCTGCCGGACCATGGGGGAGCAGTCGTTACCGTGGTTGTTGATCCGGGGAGTAATTGGAAGCCAGTGGTTGTTAGTTGGTTGCCGGTGCCGGTTAAAGCTCCCGGCCAAATTGGGAAGGGACAGTTATTATGA

mRNA sequence

ATGTCGAAAAAATCTTGGCCGCCATTGGGTGCTATCGTGAATTCAACGAGACTAGCTGGCGGAATTGCGGCGGCGCCGTTGCACTCGACTTGGCCAATGCCGCAATCGGCGGTTGCGCAAGAGAATTTTCCATTTGGATCTGTGGAACAGAGAGTTCGAGCCCAGAATCTGCCGGACCATGGGGGAGCAGTCGTTACCGTGGTTGTTGATCCGGGGAGTAATTGGAAGCCAGTGGTTGTTAGTTGGTTGCCGGTGCCGGTTAAAGCTCCCGGCCAAATTGGGAAGGGACAGTTATTATGA

Coding sequence (CDS)

ATGTCGAAAAAATCTTGGCCGCCATTGGGTGCTATCGTGAATTCAACGAGACTAGCTGGCGGAATTGCGGCGGCGCCGTTGCACTCGACTTGGCCAATGCCGCAATCGGCGGTTGCGCAAGAGAATTTTCCATTTGGATCTGTGGAACAGAGAGTTCGAGCCCAGAATCTGCCGGACCATGGGGGAGCAGTCGTTACCGTGGTTGTTGATCCGGGGAGTAATTGGAAGCCAGTGGTTGTTAGTTGGTTGCCGGTGCCGGTTAAAGCTCCCGGCCAAATTGGGAAGGGACAGTTATTATGA

Protein sequence

MSKKSWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVVVSWLPVPVKAPGQIGKGQLL*

Homology

[Close]

BLAST of CSPI06G24930 vs. ExPASy TrEMBL
Match: A0A6N2MKD6 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS383472 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.1e-10
Identity = 49/97 (50.52%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 7   PPLGAI----VNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGG 66
           PP G I    VNS + AGGIA APLHS  P  QSAVAQ NFP  SVE  V AQ  P H  
Sbjct: 48  PPCGVIEIGRVNSAKEAGGIAPAPLHSMTPEAQSAVAQTNFPDASVEHCVLAQKRPAHVA 107

Query: 67  AVVTVVVDPGSNWKPVV-VSWLPVPVKAPGQIGKGQL 99
             +     P +N KPV   + LP  V+APGQ   G L
Sbjct: 108 GALREDEAPAANVKPVEDNAGLPGFVRAPGQTVYGHL 144

[Close]

BLAST of CSPI06G24930 vs. ExPASy TrEMBL
Match: A0A7J6FJX9 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_002841 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-09
Identity = 46/97 (47.42%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 4   KSWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLP-DHGG 63
           KS PP  + V+STR+ GG   APLHST P P S +A  N P   VEQR R Q  P     
Sbjct: 210 KSCPPFPSTVSSTRVVGGAPPAPLHSTLPDPHSPLAHVNLP-ELVEQRSRPQKRPVQRPA 269

Query: 64  AVVTVVVDPGSNWKPVVVSW-LPVPVKAPGQIGKGQL 99
            + T  + PG+N KPVV SW    PV+  GQ+G  QL
Sbjct: 270 GMSTERLAPGANSKPVVESWGFWSPVRVAGQMGLWQL 305

[Close]

BLAST of CSPI06G24930 vs. ExPASy TrEMBL
Match: A0A0A9LR02 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.5e-09
Identity = 46/92 (50.00%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 2   SKKSWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPF-GSVEQRVRAQNLPDH 61
           SKKS PP  + VNS  +AGG A APLH T P PQS VAQ + P   SV Q VRA   PDH
Sbjct: 14  SKKSMPPDPSSVNSASVAGGAAPAPLHWTLPEPQSPVAQVSLPVAASVAQSVRAHIRPDH 73

Query: 62  GGAVVTVVVDPGSNWKPVVVSW-LPVPVKAPG 92
                TV   P ++  PVV S  +P P  +PG
Sbjct: 74  LAGASTVADAPCASANPVVDSGSVPAPDSSPG 105

[Close]

BLAST of CSPI06G24930 vs. ExPASy TrEMBL
Match: A0A5N5JLH5 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_024510 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.5e-09
Identity = 47/97 (48.45%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 7   PPLGAI----VNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGG 66
           PP G I    VNS + AGGIA APLHS  P  QSAVAQ NFP  SVE  V AQ  P H  
Sbjct: 71  PPCGVIEIGRVNSAKEAGGIAPAPLHSMTPEAQSAVAQTNFPDASVEHCVLAQKRPAHVA 130

Query: 67  AVVTVVVDPGSNWKPVV-VSWLPVPVKAPGQIGKGQL 99
             ++    P +N KPV   +  P  V+ PGQ   G L
Sbjct: 131 GALSEDEAPAANVKPVEDNAGPPAFVRVPGQTVYGHL 167

[Close]

BLAST of CSPI06G24930 vs. ExPASy TrEMBL
Match: A0A0A9NYD1 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.8e-09
Identity = 45/92 (48.91%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 2   SKKSWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPF-GSVEQRVRAQNLPDH 61
           SKKS PP  + VNS  +AGG A  PLH T P PQSAV Q + P   SV Q VRA   PDH
Sbjct: 14  SKKSMPPDPSSVNSASVAGGAAPPPLHWTLPEPQSAVEQVSLPVAASVAQSVRAHMRPDH 73

Query: 62  GGAVVTVVVDPGSNWKPVVVSW-LPVPVKAPG 92
                TV   P ++  PVV S  +P P  +PG
Sbjct: 74  FAGASTVADAPCASANPVVDSGSVPAPDSSPG 105

[Close]

BLAST of CSPI06G24930 vs. NCBI nr
Match: KAF4370948.1 (hypothetical protein F8388_002841 [Cannabis sativa])

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-09
Identity = 46/97 (47.42%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 4   KSWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLP-DHGG 63
           KS PP  + V+STR+ GG   APLHST P P S +A  N P   VEQR R Q  P     
Sbjct: 210 KSCPPFPSTVSSTRVVGGAPPAPLHSTLPDPHSPLAHVNLP-ELVEQRSRPQKRPVQRPA 269

Query: 64  AVVTVVVDPGSNWKPVVVSW-LPVPVKAPGQIGKGQL 99
            + T  + PG+N KPVV SW    PV+  GQ+G  QL
Sbjct: 270 GMSTERLAPGANSKPVVESWGFWSPVRVAGQMGLWQL 305

[Close]

BLAST of CSPI06G24930 vs. NCBI nr
Match: KAB5520191.1 (hypothetical protein DKX38_024510 [Salix brachista])

HSP 1 Score: 70.9 bits (172), Expect = 7.2e-09
Identity = 47/97 (48.45%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 7   PPLGAI----VNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGG 66
           PP G I    VNS + AGGIA APLHS  P  QSAVAQ NFP  SVE  V AQ  P H  
Sbjct: 71  PPCGVIEIGRVNSAKEAGGIAPAPLHSMTPEAQSAVAQTNFPDASVEHCVLAQKRPAHVA 130

Query: 67  AVVTVVVDPGSNWKPVV-VSWLPVPVKAPGQIGKGQL 99
             ++    P +N KPV   +  P  V+ PGQ   G L
Sbjct: 131 GALSEDEAPAANVKPVEDNAGPPAFVRVPGQTVYGHL 167

[Close]

BLAST of CSPI06G24930 vs. NCBI nr
Match: KAF9682190.1 (hypothetical protein SADUNF_Sadunf05G0082900 [Salix dunnii])

HSP 1 Score: 70.5 bits (171), Expect = 9.5e-09
Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 9   LGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVV 68
           +G +VNS ++AGG+A APLHSTWP PQSAVAQE +P  S  Q VR Q  PD         
Sbjct: 65  IGKLVNSAKVAGGVAPAPLHSTWPEPQSAVAQEPWPEESKLQPVRPQKRPDQPVGTWKER 124

Query: 69  VDPGSNWKPVVVSW-LPVPVKAPGQIGKGQLL 100
             P  + KPV+ S+ LP   + PGQ  +  LL
Sbjct: 125 ELPLVSSKPVLSSFGLP---RIPGQTEESHLL 153

[Close]

BLAST of CSPI06G24930 vs. NCBI nr
Match: KAF9867878.1 (hypothetical protein H0E87_026561 [Populus deltoides])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 44/87 (50.57%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 13  VNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPG 72
           VNS   AGGIA APLHS  P  QSAVAQ NFP  SVE  V A   PDH    ++    P 
Sbjct: 76  VNSAMDAGGIAPAPLHSMTPEAQSAVAQTNFPEESVEHCVLAHKRPDHVAGTLSEDEAPV 135

Query: 73  SNWKPVV-VSWLPVPVKAPGQIGKGQL 99
           +N KPV  +   P  V+ PGQ   GQL
Sbjct: 136 ANVKPVEDIVGRPAAVRVPGQTVYGQL 162

[Close]

BLAST of CSPI06G24930 vs. NCBI nr
Match: GER45429.1 (UDP-Glycosyltransferase superfamily protein [Striga asiatica])

HSP 1 Score: 67.8 bits (164), Expect = 6.1e-08
Identity = 45/89 (50.56%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 5   SWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAV 64
           S+PP    VNSTR AGG A A  HSTWP PQSA+ Q N    + E   RAQNLPDHG A+
Sbjct: 798 SFPPSPPSVNSTREAGGAAPAWRHSTWPDPQSALRQVN--LSAYEHSNRAQNLPDHGEAM 857

Query: 65  VTVVVDPGSNWKPVVVSWLPVPVKAPGQI 94
               V    + KP V    P PV+  GQI
Sbjct: 858 SRGFVAWEGSSKP-VRDCGPDPVRVAGQI 883

The following BLAST results are available for this feature:

BLAST of CSPI06G24930 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G24930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6N2MKD6	7.1e-10	50.52	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS383472 PE=4 SV=...	[more]
A0A7J6FJX9	2.1e-09	47.42	RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_002841 PE=...	[more]
A0A0A9LR02	3.5e-09	50.00	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A5N5JLH5	3.5e-09	48.45	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_024510 PE=4 SV=1	[more]
A0A0A9NYD1	7.8e-09	48.91	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of CSPI06G24930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4370948.1	4.2e-09	47.42	hypothetical protein F8388_002841 [Cannabis sativa]	[more]
KAB5520191.1	7.2e-09	48.45	hypothetical protein DKX38_024510 [Salix brachista]	[more]
KAF9682190.1	9.5e-09	47.83	hypothetical protein SADUNF_Sadunf05G0082900 [Salix dunnii]	[more]
KAF9867878.1	1.2e-08	50.57	hypothetical protein H0E87_026561 [Populus deltoides]	[more]
GER45429.1	6.1e-08	50.56	UDP-Glycosyltransferase superfamily protein [Striga asiatica]	[more]

BLAST of CSPI06G24930 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G24930.1	CSPI06G24930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity