CSPI06G24700 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G24700
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 22049857 .. 22051164 (+)
RNA-Seq ExpressionCSPI06G24700
SyntenyCSPI06G24700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCACTTCTTCCATTGCCGCCCAACCAGTCCCACCACCCACCGTCGCTCAACGGTAAGTTTTATTCGTTCTTTCCCATTCGCTTTCTCCATTTCTCTCACTCATGCCCACCCAACCGTAGCAAGTGCCAGATTTTCGCCCAACTTCGCACGCCGTCTTCGCATATCCGCCTTTGGTTGGTTCCGATTCCCTTCCCTTCTCTTTTATTATTCACTATCCATCTCTCTATCTTCATCTTCATGTTCCAGACCAGAATTTCCGCTGACATCTTTCAAGCTCGTCGCTGCCGGGGTAACTTCTTGTCGATTGCGGGCGCTGCTTGTTCTCGTAGTAGGTAAGAGTTTCTGACGGATTTTTGGGTTTTATAGGCAATTCTTGATCACCCACTAAGTTTGAACAAAAACTTAGGTCACTCGTATTGTTTTGATGTTAAATTATAGGGATTAGGCGCCTAGATTTGGCTGTTCAATGACTTGTTGTCATGTATTGCTTTCTAAAATACTTTAATTGTTCTTGAAGTCACTTCTAATGGGTTTCTACTTCTTGTTGTTTATGCATCAGTTTGAATCATTTTGTGTAGTTTTGAAGTGGATTTAGATTAACCCACAATTTGGATAAGTTGTTTAAAGAGACGGATGAATTTATGTTTTGGAATATGAACAGAAAGGTTGGAGTTGTTTTGGCTTGTGTTTTAGGTTTGGAGTGAGGTTTCTCTAAGTCGAAAGAACTCTATATTGGAGTACCTATGTGCTAAGCCGGAATTATATCGATATTATTTTTCGCTGGGTAAAGCAAAGGGAAAATTTTATTCCAAATGCCAGTTATCCTTTACAACAAAGAGAAGCCTTGCATTTAAAGATTTTCCAAACCAACTAACTTGCTGGACATGAAAAACAAACTTAAAGGCCTAAAAGGCGCGCCCTAACAAAACAAGGGCAGAACAAGTCGGGAAGGCACGAACCACATCATTGGCCTTGCAAAAACAAGTTTAGAAAGCTTGTTTGTTTTGCTTTTACTGATTGATAAAAATTTATAAGCATGCTATGTAAATTTCATGTGTTATGATAATAGTATTGTGGGACCCTATTAATTATTGCATTTTGTAGGCTAGATCATAGTTACTAGTAGCTTTGTACATACCAGTTTGTGTGCCTTAGCGCGCATCTAAGATTGTGTTGTTTTCATCTGATTGCAATTTTCAATTATCGTGCATGTAGTAATGACTTCAGTTAGAGGTCTTGGAAAGTTGGGTAGTTACTATGATACTCGAATTGGCACGACGTGGAATGCCTTTAATGGAAATCAC

mRNA sequence

ATGCTCACTTCTTCCATTGCCGCCCAACCAGTCCCACCACCCACCGTCGCTCAACGACCAGAATTTCCGCTGACATCTTTCAAGCTCGTCGCTGCCGGGGTAACTTCTTGTCGATTGCGGGCGCTGCTTGTTCTCGTAGTAGTAATGACTTCAGTTAGAGGTCTTGGAAAGTTGGGTAGTTACTATGATACTCGAATTGGCACGACGTGGAATGCCTTTAATGGAAATCAC

Coding sequence (CDS)

ATGCTCACTTCTTCCATTGCCGCCCAACCAGTCCCACCACCCACCGTCGCTCAACGACCAGAATTTCCGCTGACATCTTTCAAGCTCGTCGCTGCCGGGGTAACTTCTTGTCGATTGCGGGCGCTGCTTGTTCTCGTAGTAGTAATGACTTCAGTTAGAGGTCTTGGAAAGTTGGGTAGTTACTATGATACTCGAATTGGCACGACGTGGAATGCCTTTAATGGAAATCAC

Protein sequence

MLTSSIAAQPVPPPTVAQRPEFPLTSFKLVAAGVTSCRLRALLVLVVVMTSVRGLGKLGSYYDTRIGTTWNAFNGNH
Homology
[Close]
BLAST of CSPI06G24700 vs. ExPASy TrEMBL
Match: A0A0A0KF55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446480 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 75/95 (78.95%), Postives = 77/95 (81.05%), Query Frame = 0 

Query: 1  MLTSSIAAQPVPPPTVAQR------------------PEFPLTSFKLVAAGVTSCRLRAL 60
          MLTSSIAAQPVPPPTVAQR                  PEFPLTSFKLVAAGVTSCRLRAL
Sbjct: 1  MLTSSIAAQPVPPPTVAQRKRQIFAQLRTPSSHIRLCPEFPLTSFKLVAAGVTSCRLRAL 60

Query: 61 LVLVVVMTSVRGLGKLGSYYDTRIGTTWNAFNGNH 78
          LVLVVVMTSVRGLG+LGSYYD+RIGTTWNAFNGNH
Sbjct: 61 LVLVVVMTSVRGLGQLGSYYDSRIGTTWNAFNGNH 95

[Close]
BLAST of CSPI06G24700 vs. NCBI nr
Match: KGN48188.1 (hypothetical protein Csa_002910 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 6.3e-29
Identity = 75/95 (78.95%), Postives = 77/95 (81.05%), Query Frame = 0 

Query: 1  MLTSSIAAQPVPPPTVAQR------------------PEFPLTSFKLVAAGVTSCRLRAL 60
          MLTSSIAAQPVPPPTVAQR                  PEFPLTSFKLVAAGVTSCRLRAL
Sbjct: 1  MLTSSIAAQPVPPPTVAQRKRQIFAQLRTPSSHIRLCPEFPLTSFKLVAAGVTSCRLRAL 60

Query: 61 LVLVVVMTSVRGLGKLGSYYDTRIGTTWNAFNGNH 78
          LVLVVVMTSVRGLG+LGSYYD+RIGTTWNAFNGNH
Sbjct: 61 LVLVVVMTSVRGLGQLGSYYDSRIGTTWNAFNGNH 95

The following BLAST results are available for this feature:
BLAST of CSPI06G24700 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G24700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF553.1e-2978.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446480 PE=4 SV=1[more]
BLAST of CSPI06G24700 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48188.16.3e-2978.95hypothetical protein Csa_002910 [Cucumis sativus][more]
BLAST of CSPI06G24700 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G24700.1CSPI06G24700.1mRNA