Homology
BLAST of CSPI06G24630 vs. ExPASy Swiss-Prot
Match:
Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)
HSP 1 Score: 516.9 bits (1330), Expect = 2.8e-145
Identity = 306/577 (53.03%), Postives = 395/577 (68.46%), Query Frame = 0
Query: 1 MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQA---------- 60
MEA NL+SSS F ++ H + SS SS SSV M +Q
Sbjct: 1 MEATRNLVSSSPSFQTKTHLK-------------SSYSSPSSVVMLHDQTTTPVVNSRHL 60
Query: 61 -SPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLI 120
S +R+F S LSQE E RP S L+DDR+SQ+TLERR + V SR+D +
Sbjct: 61 NSLSRHFPASVLSQEPREESRPLSHALRDDRTSQLTLERRQFDELV----SSRED-EKFE 120
Query: 121 WELKHQAVEWPGLLSSWPPVQMGEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSA 180
+L H W L+S E K+ ++ L E +V+ALA+KALSA
Sbjct: 121 QQLLHSTGLWNLLISP----LTSETKLPAVVSP--------LADAELCDVVALAQKALSA 180
Query: 181 SKQAALLVDETEL-----VGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTT 240
SKQAALLVD+TE + SL SS SL ++G VRS R +RR+K R+ PK
Sbjct: 181 SKQAALLVDDTEANPSDNIKDSLSTSS-SMSLPEKGNIVRSKRQLERRAKNRRAPKSNDV 240
Query: 241 IDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNV 300
DE + +++K + D +D L+LFLWGPETK+LLTA+EE+ELI IQ L+ L+ V
Sbjct: 241 DDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKV 300
Query: 301 KARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGR 360
K +L+SQ EPT+ EWAEA+GI+ L+S +H ++SREKLI ANLR+VVHIAKQYQ R
Sbjct: 301 KTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNR 360
Query: 361 GLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVY 420
GL+ DLLQ GS+GLMKSVEKFKPQ+GCRF +YAYWWIR SI K+IFQ+SRTIRLPENVY
Sbjct: 361 GLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVY 420
Query: 421 ALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQET 480
LLGKV+EA+ V+ GNY+PSKEELA VG++ E+ DKL++ +R P S+QQP+W+DQ+T
Sbjct: 421 MLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDT 480
Query: 481 TFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIG 540
TFQEIT DS ++TP +SV ++LMR H+RNLL++LSPKERRII+LRFGI+ G++++L EIG
Sbjct: 481 TFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIG 540
Query: 541 NMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL 562
++GLSKERVRQLE+RALY+LK+ NS GL AYADLL
Sbjct: 541 EIYGLSKERVRQLESRALYRLKQNMNSHGLHAYADLL 546
BLAST of CSPI06G24630 vs. ExPASy Swiss-Prot
Match:
P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)
HSP 1 Score: 245.4 bits (625), Expect = 1.6e-63
Identity = 126/326 (38.65%), Postives = 211/326 (64.72%), Query Frame = 0
Query: 223 TTIDEISNFRGKDSRRKT--SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMI 282
T D+ + + SRR+T +K D +RL+L +LL A EE EL +I DL+
Sbjct: 53 TDEDDAKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLE 112
Query: 283 LDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQ 342
L+ V+ RL + +R+P EWAEA+ + + +LH+ + +++K++ +NLR+VV IAK+
Sbjct: 113 LERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKK 172
Query: 343 YQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLP 402
Y RGLS DL+Q GSLGL+++ EKF + G +F +YA WWIR +IT+AI SRTIRLP
Sbjct: 173 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLP 232
Query: 403 ENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWA 462
++Y + ++ + + KP++EE+A R+ +T+E+ + +++P SL+ P+
Sbjct: 233 VHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGK 292
Query: 463 DQETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTL 522
++++ + +S+ +TP+ V + L+R + +L LSP+ER ++RLR+G++DGR KTL
Sbjct: 293 EEDSRLGDF-IESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTL 352
Query: 523 LEIGNMFGLSKERVRQLENRALYKLK 547
EIG +F +++ER+RQ+E +AL KL+
Sbjct: 353 EEIGQIFNVTRERIRQIEAKALRKLR 377
BLAST of CSPI06G24630 vs. ExPASy Swiss-Prot
Match:
O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)
HSP 1 Score: 244.2 bits (622), Expect = 3.5e-63
Identity = 145/419 (34.61%), Postives = 229/419 (54.65%), Query Frame = 0
Query: 140 EKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKE 199
EKE G + V D N I K SAS + ++ +L + L +
Sbjct: 156 EKERAGILGHLAVSD---NGIVSDKITASASNKESI----GDLESEKQEEVELLEEQPSV 215
Query: 200 GRTVRSTRLQDRRSKKRK-VPKHVTTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPE 259
VRSTR +R++++ K + K + I + +R +++ D NDPLR
Sbjct: 216 SLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTS 275
Query: 260 TKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHV 319
+ KLLT +EE EL IQDL+ L+ ++ L + R+PT +WA A G+ + L+ ++H
Sbjct: 276 SSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHH 335
Query: 320 FQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYA 379
++K+I +N+R+V+ IAK YQG G++L DL+Q G GL++ EKF G +F +YA
Sbjct: 336 GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 395
Query: 380 YWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITV 439
+WWI+ ++ K++ SR IRLP ++ +V EA+ P EE+A G+++
Sbjct: 396 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSM 455
Query: 440 ERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDVSVERELMRRHIRNLLSIL 499
+R ++ + PRSL Q + +Q E+ AD E T + + +E MR+ + +L L
Sbjct: 456 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSL 515
Query: 500 SPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY 558
+E+++IR RFG+EDGR KTL EIG M G+S+ERVRQ+E+ A KLK + L Y
Sbjct: 516 GTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQY 567
BLAST of CSPI06G24630 vs. ExPASy Swiss-Prot
Match:
P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)
HSP 1 Score: 236.9 bits (603), Expect = 5.6e-61
Identity = 128/322 (39.75%), Postives = 204/322 (63.35%), Query Frame = 0
Query: 226 DEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVK 285
DE + + K RKT + D +RL+L +LL A EE EL QI DL+ L+ ++
Sbjct: 71 DEDAAAKAKAKVRKTYTE----DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIR 130
Query: 286 ARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRG 345
L Q DR P+ EWA A+ + +L + +++K++ +NLR+VV IAK+Y RG
Sbjct: 131 DELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRG 190
Query: 346 LSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYA 405
LS DL+Q GSLGL+++ EKF + G +F +YA WWIR +IT+AI SRTIRLP ++Y
Sbjct: 191 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYE 250
Query: 406 LLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETT 465
+ ++ + + KP++EE+A R+ +T+E+ + +++P SL+ P+ ++++
Sbjct: 251 TISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR 310
Query: 466 FQE-ITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIG 525
+ I AD E TP+ V + L+R + +LS LSP+ER ++RLR+G++DGR KTL EIG
Sbjct: 311 LGDFIEADGE--TPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIG 370
Query: 526 NMFGLSKERVRQLENRALYKLK 547
+F +++ER+RQ+E +AL KL+
Sbjct: 371 QLFNVTRERIRQIEAKALRKLR 386
BLAST of CSPI06G24630 vs. ExPASy Swiss-Prot
Match:
P74565 (RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sigA PE=3 SV=1)
HSP 1 Score: 213.8 bits (543), Expect = 5.1e-54
Identity = 127/371 (34.23%), Postives = 212/371 (57.14%), Query Frame = 0
Query: 227 EISNFRGKDSR----RKTSEKFDP--NDPLRLFLWGPETKKLLTAQEESELIVQIQDLMI 286
E++ GK+ + RK + K P D +R++L +LL A+EE EL QI DL+
Sbjct: 44 EVAATEGKEKKVRKIRKDAVKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARQIADLLE 103
Query: 287 LDNVKARLQSQFDREPTLVEWAE---ALGITCQHL------------------------- 346
L+ ++ L Q +R+P+ +EW + L Q L
Sbjct: 104 LELIRDNLTLQLERQPSELEWGKQVWKLETAKQRLVGDKKKEPKKKDIDSYLANPDNELS 163
Query: 347 ----------------QSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGS 406
+ +L + + +++K++ +NLR+VV IAK+Y RGLS DL+Q GS
Sbjct: 164 LENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGS 223
Query: 407 LGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNY 466
LGL+++ EKF + G +F +YA WWIR +IT+AI SRTIRLP ++Y + ++ +
Sbjct: 224 LGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKL 283
Query: 467 FVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQE-ITADSEV 526
+ KP++EE+A ++ +T+E+ + +++P SL+ P+ ++++ + I AD E
Sbjct: 284 LSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGE- 343
Query: 527 DTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVR 547
TP+ V + L+R + N+L LSP+ER ++RLR+G++DGR KTL EIG +F +++ER+R
Sbjct: 344 -TPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIR 403
BLAST of CSPI06G24630 vs. ExPASy TrEMBL
Match:
A0A0A0KEQ6 (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G446410 PE=3 SV=1)
HSP 1 Score: 1088.2 bits (2813), Expect = 0.0e+00
Identity = 561/562 (99.82%), Postives = 561/562 (99.82%), Query Frame = 0
Query: 1 MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60
MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF
Sbjct: 1 MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60
Query: 61 LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120
LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP
Sbjct: 61 LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120
Query: 121 GLLSSWPPVQMGEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180
GLLSSWPPVQM EYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET
Sbjct: 121 GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180
Query: 181 ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240
ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT
Sbjct: 181 ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240
Query: 241 SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300
SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE
Sbjct: 241 SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300
Query: 301 WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360
WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM
Sbjct: 301 WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360
Query: 361 KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420
KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA
Sbjct: 361 KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420
Query: 421 GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480
GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV
Sbjct: 421 GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480
Query: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540
SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR
Sbjct: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540
Query: 541 ALYKLKRCCNSQGLGAYADLLT 563
ALYKLKRCCNSQGLGAYADLLT
Sbjct: 541 ALYKLKRCCNSQGLGAYADLLT 562
BLAST of CSPI06G24630 vs. ExPASy TrEMBL
Match:
A0A1S4E3S8 (RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)
HSP 1 Score: 962.2 bits (2486), Expect = 9.4e-277
Identity = 491/520 (94.42%), Postives = 501/520 (96.35%), Query Frame = 0
Query: 43 VYMFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSR 102
VYMF EQASPARYFSTSFLSQEQHHECRPQSQILKDDR+SQMTL+RRLIERSVPIDEGSR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373
Query: 103 DDHDHLIWELKHQAVEWPGLLSSWPPVQMGEYKISSIEKESYNAAGEMLVKDEPENVIAL 162
DHDHLIWELKHQAVEWP LLSSWP +QM EYKISS EKESYNA GEMLVKDEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433
Query: 163 AKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 222
AKKALSASKQAALLVDE+ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 493
Query: 223 TTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILD 282
TTI E SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILD
Sbjct: 494 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 553
Query: 283 NVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQ 342
NVKA+LQSQF REPTLVEWAEALGITCQ LQSQLH F+TSREKLINANLRMVVHIAKQY
Sbjct: 554 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 613
Query: 343 GRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPEN 402
GRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLPEN
Sbjct: 614 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 673
Query: 403 VYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQ 462
VYALLGKVTEAKNY VRAGNYKPSKEELAA VGITVER DKLMFMSRIPRSLQQPVWADQ
Sbjct: 674 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 733
Query: 463 ETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLE 522
+TT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLE
Sbjct: 734 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 793
Query: 523 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 563
IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 794 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833
BLAST of CSPI06G24630 vs. ExPASy TrEMBL
Match:
A0A1S4E4I4 (RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)
HSP 1 Score: 962.2 bits (2486), Expect = 9.4e-277
Identity = 491/520 (94.42%), Postives = 501/520 (96.35%), Query Frame = 0
Query: 43 VYMFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSR 102
VYMF EQASPARYFSTSFLSQEQHHECRPQSQILKDDR+SQMTL+RRLIERSVPIDEGSR
Sbjct: 312 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 371
Query: 103 DDHDHLIWELKHQAVEWPGLLSSWPPVQMGEYKISSIEKESYNAAGEMLVKDEPENVIAL 162
DHDHLIWELKHQAVEWP LLSSWP +QM EYKISS EKESYNA GEMLVKDEPENVIAL
Sbjct: 372 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 431
Query: 163 AKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 222
AKKALSASKQAALLVDE+ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV
Sbjct: 432 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 491
Query: 223 TTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILD 282
TTI E SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILD
Sbjct: 492 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 551
Query: 283 NVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQ 342
NVKA+LQSQF REPTLVEWAEALGITCQ LQSQLH F+TSREKLINANLRMVVHIAKQY
Sbjct: 552 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 611
Query: 343 GRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPEN 402
GRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLPEN
Sbjct: 612 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 671
Query: 403 VYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQ 462
VYALLGKVTEAKNY VRAGNYKPSKEELAA VGITVER DKLMFMSRIPRSLQQPVWADQ
Sbjct: 672 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 731
Query: 463 ETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLE 522
+TT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLE
Sbjct: 732 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 791
Query: 523 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 563
IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 792 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 831
BLAST of CSPI06G24630 vs. ExPASy TrEMBL
Match:
A0A5A7V893 (RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00350 PE=3 SV=1)
HSP 1 Score: 960.7 bits (2482), Expect = 2.7e-276
Identity = 490/520 (94.23%), Postives = 501/520 (96.35%), Query Frame = 0
Query: 43 VYMFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSR 102
VYMF EQASPARYFSTSFLSQEQHHECRPQSQILKDDR+SQMTL+RRLIERSVPIDEGSR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373
Query: 103 DDHDHLIWELKHQAVEWPGLLSSWPPVQMGEYKISSIEKESYNAAGEMLVKDEPENVIAL 162
DHDHLIWELKHQAVEWP LLSSWP +QM EYKISS EKESYNA GEMLVKDEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433
Query: 163 AKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 222
AKKALSASKQAALLVDE+ELVGTSLDYSSLDDSLSKEGRTVRSTRLQ+RRSKKRKVPKHV
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQERRSKKRKVPKHV 493
Query: 223 TTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILD 282
TTI E SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILD
Sbjct: 494 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 553
Query: 283 NVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQ 342
NVKA+LQSQF REPTLVEWAEALGITCQ LQSQLH F+TSREKLINANLRMVVHIAKQY
Sbjct: 554 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 613
Query: 343 GRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPEN 402
GRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLPEN
Sbjct: 614 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 673
Query: 403 VYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQ 462
VYALLGKVTEAKNY VRAGNYKPSKEELAA VGITVER DKLMFMSRIPRSLQQPVWADQ
Sbjct: 674 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 733
Query: 463 ETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLE 522
+TT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLE
Sbjct: 734 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 793
Query: 523 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 563
IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 794 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833
BLAST of CSPI06G24630 vs. ExPASy TrEMBL
Match:
A0A5D3CAF4 (RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00200 PE=3 SV=1)
HSP 1 Score: 956.4 bits (2471), Expect = 5.1e-275
Identity = 488/518 (94.21%), Postives = 499/518 (96.33%), Query Frame = 0
Query: 45 MFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDD 104
MF EQASPARYFSTSFLSQEQHHECRPQSQILKDDR+SQMTL+RRLIERSVPIDEGSR D
Sbjct: 1 MFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSRSD 60
Query: 105 HDHLIWELKHQAVEWPGLLSSWPPVQMGEYKISSIEKESYNAAGEMLVKDEPENVIALAK 164
HDHLIWELKHQAVEWP LLSSWP +QM EYKISS EKESYNA GEMLVKDEPENVIALAK
Sbjct: 61 HDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIALAK 120
Query: 165 KALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTT 224
KALSASKQAALLVDE+ELVGTSLDYSSLDDSLSKEGRTVRSTRLQ+RRSKKRKVPKHVTT
Sbjct: 121 KALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQERRSKKRKVPKHVTT 180
Query: 225 IDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNV 284
I E SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILDNV
Sbjct: 181 IHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILDNV 240
Query: 285 KARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGR 344
KA+LQSQF REPTLVEWAEALGITCQ LQSQLH F+TSREKLINANLRMVVHIAKQY GR
Sbjct: 241 KAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYLGR 300
Query: 345 GLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVY 404
GLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLPENVY
Sbjct: 301 GLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVY 360
Query: 405 ALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQET 464
ALLGKVTEAKNY VRAGNYKPSKEELAA VGITVER DKLMFMSRIPRSLQQPVWADQ+T
Sbjct: 361 ALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQDT 420
Query: 465 TFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIG 524
T+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLEIG
Sbjct: 421 TYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIG 480
Query: 525 NMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 563
NMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 481 NMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 518
BLAST of CSPI06G24630 vs. NCBI nr
Match:
XP_031742499.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] >KGN48180.1 hypothetical protein Csa_003758 [Cucumis sativus])
HSP 1 Score: 1088.2 bits (2813), Expect = 0.0e+00
Identity = 561/562 (99.82%), Postives = 561/562 (99.82%), Query Frame = 0
Query: 1 MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60
MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF
Sbjct: 1 MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60
Query: 61 LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120
LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP
Sbjct: 61 LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120
Query: 121 GLLSSWPPVQMGEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180
GLLSSWPPVQM EYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET
Sbjct: 121 GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180
Query: 181 ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240
ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT
Sbjct: 181 ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240
Query: 241 SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300
SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE
Sbjct: 241 SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300
Query: 301 WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360
WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM
Sbjct: 301 WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360
Query: 361 KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420
KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA
Sbjct: 361 KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420
Query: 421 GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480
GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV
Sbjct: 421 GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480
Query: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540
SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR
Sbjct: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540
Query: 541 ALYKLKRCCNSQGLGAYADLLT 563
ALYKLKRCCNSQGLGAYADLLT
Sbjct: 541 ALYKLKRCCNSQGLGAYADLLT 562
BLAST of CSPI06G24630 vs. NCBI nr
Match:
XP_038882876.1 (RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida])
HSP 1 Score: 968.4 bits (2502), Expect = 2.7e-278
Identity = 503/562 (89.50%), Postives = 522/562 (92.88%), Query Frame = 0
Query: 1 MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60
MEAGLNLLSSSS FISRCHPRSFL PSC SSSSSSSSV MF EQA PARYFSTSF
Sbjct: 1 MEAGLNLLSSSSLFISRCHPRSFLHPSC------SSSSSSSSVSMFHEQAIPARYFSTSF 60
Query: 61 LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120
LSQEQHHECRPQSQILKDDR+SQ TL+RRLIERSV IDEG+R DHDHLIWE KHQAVEWP
Sbjct: 61 LSQEQHHECRPQSQILKDDRTSQTTLDRRLIERSVSIDEGNRSDHDHLIWEFKHQAVEWP 120
Query: 121 GLLSSWPPVQMGEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180
GLLSSWP +QM EYKISS+EK+SYNA GEMLVKDEPENVIALAKKALSASKQAA LVDE+
Sbjct: 121 GLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAASLVDES 180
Query: 181 ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240
ELVGT+LDY+S DDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTI E SN +GKDSRRKT
Sbjct: 181 ELVGTNLDYTSPDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIHETSNSKGKDSRRKT 240
Query: 241 SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300
E FDPNDPLRLFLWGPETKKLLT +EESELIVQIQDLMILDNVKARLQSQF REPTLVE
Sbjct: 241 IENFDPNDPLRLFLWGPETKKLLTVEEESELIVQIQDLMILDNVKARLQSQFGREPTLVE 300
Query: 301 WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360
WAEALG+TCQ LQSQL F+ SREKLINANLRMVVHIAKQYQGRGLSL DLLQ GSLGLM
Sbjct: 301 WAEALGLTCQRLQSQLQSFRISREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSLGLM 360
Query: 361 KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420
KSVEKFKPQAGCRF +YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNYFVRA
Sbjct: 361 KSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRA 420
Query: 421 GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480
GNYKPSKEELAARVGITVER DKL+FMSRIPRSLQQPVW DQ+TTFQEITADSE+DTPDV
Sbjct: 421 GNYKPSKEELAARVGITVERLDKLLFMSRIPRSLQQPVWTDQDTTFQEITADSELDTPDV 480
Query: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540
SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLENR
Sbjct: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENR 540
Query: 541 ALYKLKRCCNSQGLGAYADLLT 563
ALYKLKRC NSQGLGAYADLLT
Sbjct: 541 ALYKLKRCSNSQGLGAYADLLT 556
BLAST of CSPI06G24630 vs. NCBI nr
Match:
XP_016902883.1 (PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] >XP_016902884.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo])
HSP 1 Score: 962.2 bits (2486), Expect = 1.9e-276
Identity = 491/520 (94.42%), Postives = 501/520 (96.35%), Query Frame = 0
Query: 43 VYMFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSR 102
VYMF EQASPARYFSTSFLSQEQHHECRPQSQILKDDR+SQMTL+RRLIERSVPIDEGSR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373
Query: 103 DDHDHLIWELKHQAVEWPGLLSSWPPVQMGEYKISSIEKESYNAAGEMLVKDEPENVIAL 162
DHDHLIWELKHQAVEWP LLSSWP +QM EYKISS EKESYNA GEMLVKDEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433
Query: 163 AKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 222
AKKALSASKQAALLVDE+ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 493
Query: 223 TTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILD 282
TTI E SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILD
Sbjct: 494 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 553
Query: 283 NVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQ 342
NVKA+LQSQF REPTLVEWAEALGITCQ LQSQLH F+TSREKLINANLRMVVHIAKQY
Sbjct: 554 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 613
Query: 343 GRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPEN 402
GRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLPEN
Sbjct: 614 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 673
Query: 403 VYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQ 462
VYALLGKVTEAKNY VRAGNYKPSKEELAA VGITVER DKLMFMSRIPRSLQQPVWADQ
Sbjct: 674 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 733
Query: 463 ETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLE 522
+TT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLE
Sbjct: 734 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 793
Query: 523 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 563
IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 794 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833
BLAST of CSPI06G24630 vs. NCBI nr
Match:
XP_016902885.1 (PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo])
HSP 1 Score: 962.2 bits (2486), Expect = 1.9e-276
Identity = 491/520 (94.42%), Postives = 501/520 (96.35%), Query Frame = 0
Query: 43 VYMFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSR 102
VYMF EQASPARYFSTSFLSQEQHHECRPQSQILKDDR+SQMTL+RRLIERSVPIDEGSR
Sbjct: 312 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 371
Query: 103 DDHDHLIWELKHQAVEWPGLLSSWPPVQMGEYKISSIEKESYNAAGEMLVKDEPENVIAL 162
DHDHLIWELKHQAVEWP LLSSWP +QM EYKISS EKESYNA GEMLVKDEPENVIAL
Sbjct: 372 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 431
Query: 163 AKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 222
AKKALSASKQAALLVDE+ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV
Sbjct: 432 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 491
Query: 223 TTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILD 282
TTI E SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILD
Sbjct: 492 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 551
Query: 283 NVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQ 342
NVKA+LQSQF REPTLVEWAEALGITCQ LQSQLH F+TSREKLINANLRMVVHIAKQY
Sbjct: 552 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 611
Query: 343 GRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPEN 402
GRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLPEN
Sbjct: 612 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 671
Query: 403 VYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQ 462
VYALLGKVTEAKNY VRAGNYKPSKEELAA VGITVER DKLMFMSRIPRSLQQPVWADQ
Sbjct: 672 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 731
Query: 463 ETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLE 522
+TT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLE
Sbjct: 732 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 791
Query: 523 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 563
IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 792 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 831
BLAST of CSPI06G24630 vs. NCBI nr
Match:
KAA0063818.1 (RNA polymerase sigma factor sigF [Cucumis melo var. makuwa])
HSP 1 Score: 960.7 bits (2482), Expect = 5.6e-276
Identity = 490/520 (94.23%), Postives = 501/520 (96.35%), Query Frame = 0
Query: 43 VYMFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSR 102
VYMF EQASPARYFSTSFLSQEQHHECRPQSQILKDDR+SQMTL+RRLIERSVPIDEGSR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373
Query: 103 DDHDHLIWELKHQAVEWPGLLSSWPPVQMGEYKISSIEKESYNAAGEMLVKDEPENVIAL 162
DHDHLIWELKHQAVEWP LLSSWP +QM EYKISS EKESYNA GEMLVKDEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433
Query: 163 AKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 222
AKKALSASKQAALLVDE+ELVGTSLDYSSLDDSLSKEGRTVRSTRLQ+RRSKKRKVPKHV
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQERRSKKRKVPKHV 493
Query: 223 TTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILD 282
TTI E SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILD
Sbjct: 494 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 553
Query: 283 NVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQ 342
NVKA+LQSQF REPTLVEWAEALGITCQ LQSQLH F+TSREKLINANLRMVVHIAKQY
Sbjct: 554 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 613
Query: 343 GRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPEN 402
GRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLPEN
Sbjct: 614 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 673
Query: 403 VYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQ 462
VYALLGKVTEAKNY VRAGNYKPSKEELAA VGITVER DKLMFMSRIPRSLQQPVWADQ
Sbjct: 674 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 733
Query: 463 ETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLE 522
+TT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLE
Sbjct: 734 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 793
Query: 523 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 563
IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 794 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833
BLAST of CSPI06G24630 vs. TAIR 10
Match:
AT2G36990.1 (RNApolymerase sigma-subunit F )
HSP 1 Score: 516.9 bits (1330), Expect = 2.0e-146
Identity = 306/577 (53.03%), Postives = 395/577 (68.46%), Query Frame = 0
Query: 1 MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQA---------- 60
MEA NL+SSS F ++ H + SS SS SSV M +Q
Sbjct: 1 MEATRNLVSSSPSFQTKTHLK-------------SSYSSPSSVVMLHDQTTTPVVNSRHL 60
Query: 61 -SPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLI 120
S +R+F S LSQE E RP S L+DDR+SQ+TLERR + V SR+D +
Sbjct: 61 NSLSRHFPASVLSQEPREESRPLSHALRDDRTSQLTLERRQFDELV----SSRED-EKFE 120
Query: 121 WELKHQAVEWPGLLSSWPPVQMGEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSA 180
+L H W L+S E K+ ++ L E +V+ALA+KALSA
Sbjct: 121 QQLLHSTGLWNLLISP----LTSETKLPAVVSP--------LADAELCDVVALAQKALSA 180
Query: 181 SKQAALLVDETEL-----VGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTT 240
SKQAALLVD+TE + SL SS SL ++G VRS R +RR+K R+ PK
Sbjct: 181 SKQAALLVDDTEANPSDNIKDSLSTSS-SMSLPEKGNIVRSKRQLERRAKNRRAPKSNDV 240
Query: 241 IDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNV 300
DE + +++K + D +D L+LFLWGPETK+LLTA+EE+ELI IQ L+ L+ V
Sbjct: 241 DDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKV 300
Query: 301 KARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGR 360
K +L+SQ EPT+ EWAEA+GI+ L+S +H ++SREKLI ANLR+VVHIAKQYQ R
Sbjct: 301 KTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNR 360
Query: 361 GLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVY 420
GL+ DLLQ GS+GLMKSVEKFKPQ+GCRF +YAYWWIR SI K+IFQ+SRTIRLPENVY
Sbjct: 361 GLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVY 420
Query: 421 ALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQET 480
LLGKV+EA+ V+ GNY+PSKEELA VG++ E+ DKL++ +R P S+QQP+W+DQ+T
Sbjct: 421 MLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDT 480
Query: 481 TFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIG 540
TFQEIT DS ++TP +SV ++LMR H+RNLL++LSPKERRII+LRFGI+ G++++L EIG
Sbjct: 481 TFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIG 540
Query: 541 NMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL 562
++GLSKERVRQLE+RALY+LK+ NS GL AYADLL
Sbjct: 541 EIYGLSKERVRQLESRALYRLKQNMNSHGLHAYADLL 546
BLAST of CSPI06G24630 vs. TAIR 10
Match:
AT1G08540.1 (RNApolymerase sigma subunit 2 )
HSP 1 Score: 244.2 bits (622), Expect = 2.5e-64
Identity = 145/419 (34.61%), Postives = 229/419 (54.65%), Query Frame = 0
Query: 140 EKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKE 199
EKE G + V D N I K SAS + ++ +L + L +
Sbjct: 156 EKERAGILGHLAVSD---NGIVSDKITASASNKESI----GDLESEKQEEVELLEEQPSV 215
Query: 200 GRTVRSTRLQDRRSKKRK-VPKHVTTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPE 259
VRSTR +R++++ K + K + I + +R +++ D NDPLR
Sbjct: 216 SLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTS 275
Query: 260 TKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHV 319
+ KLLT +EE EL IQDL+ L+ ++ L + R+PT +WA A G+ + L+ ++H
Sbjct: 276 SSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHH 335
Query: 320 FQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYA 379
++K+I +N+R+V+ IAK YQG G++L DL+Q G GL++ EKF G +F +YA
Sbjct: 336 GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 395
Query: 380 YWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITV 439
+WWI+ ++ K++ SR IRLP ++ +V EA+ P EE+A G+++
Sbjct: 396 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSM 455
Query: 440 ERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDVSVERELMRRHIRNLLSIL 499
+R ++ + PRSL Q + +Q E+ AD E T + + +E MR+ + +L L
Sbjct: 456 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSL 515
Query: 500 SPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY 558
+E+++IR RFG+EDGR KTL EIG M G+S+ERVRQ+E+ A KLK + L Y
Sbjct: 516 GTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQY 567
BLAST of CSPI06G24630 vs. TAIR 10
Match:
AT5G13730.1 (sigma factor 4 )
HSP 1 Score: 164.9 bits (416), Expect = 1.9e-40
Identity = 102/302 (33.77%), Postives = 155/302 (51.32%), Query Frame = 0
Query: 256 GPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQ 315
G L+ EE +L + +++ L+N+ ++ + E V A G +
Sbjct: 116 GASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVE---ENEMVSVLLASGRGKKKRSANEI 175
Query: 316 LHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFG 375
L + +REK+ R+VV IA YQG+GL+L DL+Q GS+GL++ E+F P G +
Sbjct: 176 LCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLS 235
Query: 376 SYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVG 435
+Y YWWI+ +I +AI SR ++LP +++ L KV EA N R +PS EE+A +
Sbjct: 236 TYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLN 295
Query: 436 ITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDVSVERELMRRHIRNLL 495
+ V + SR P SL + + T QEI + P+ V+RE M+ I LL
Sbjct: 296 LNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLL 355
Query: 496 SILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLG 555
L+ +E R++ L FG+ + EIG LS+ERVRQ+ AL KL+ N L
Sbjct: 356 GSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLK 414
Query: 556 AY 558
Y
Sbjct: 416 IY 414
BLAST of CSPI06G24630 vs. TAIR 10
Match:
AT3G53920.1 (RNApolymerase sigma-subunit C )
HSP 1 Score: 151.8 bits (382), Expect = 1.7e-36
Identity = 100/392 (25.51%), Postives = 197/392 (50.26%), Query Frame = 0
Query: 170 SKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTI---D 229
S + L D TELV T+ + S K + R + + + +P + T
Sbjct: 197 SSITSCLSDTTELVDTTPNQQVFVSSRRKVKKKARRSSVTAENGDQSSLPIGLRTTWNNI 256
Query: 230 EISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKA 289
++ R RK E+ N E+E+ ++ + ++ ++
Sbjct: 257 DVPRVRRPPKYRKKRERISRN--------------------ETEMSTGVKIVADMERIRT 316
Query: 290 RLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGL 349
+L+ + + +L WA A G+ + L LH R++L+ + +V+ +A+ Y+G G+
Sbjct: 317 QLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGI 376
Query: 350 SLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYAL 409
+ DL+Q G +G+++ E+F G +F +Y +WIR S++ + +H+R + +P ++
Sbjct: 377 AHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRT 436
Query: 410 LGKVTEAKNYFVRAGNYK-PSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETT 469
+ + +A+ + K + EE+A G +V++ ++ S+ + V T
Sbjct: 437 INHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTK 496
Query: 470 FQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGN 529
F E T D+ +++P+ +V R+ RR I +LL L P+E++++ LR+G++D R K+L EIG
Sbjct: 497 FLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGK 556
Query: 530 MFGLSKERVRQLENRALYKLKRCCNSQGLGAY 558
+ +SKE +R++E RA+ KL+ N++ L Y
Sbjct: 557 LLKVSKEWIRKIERRAMAKLRDQPNAEDLRYY 568
BLAST of CSPI06G24630 vs. TAIR 10
Match:
AT1G64860.1 (sigma factor A )
HSP 1 Score: 127.5 bits (319), Expect = 3.4e-29
Identity = 115/425 (27.06%), Postives = 203/425 (47.76%), Query Frame = 0
Query: 139 IEKESYNAAGEMLVKDEPENVIALAKKALSASKQAAL-LVDETELVGTSLDYSSLDDSLS 198
+E+E Y+ + L+ E ++ L K L S + +E G ++
Sbjct: 96 LEEECYD--DDDLISHSVEAILLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVIT 155
Query: 199 KEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGP 258
G + R R+ +KK+ HV + ++S+ GK +R ++ G
Sbjct: 156 CSGISARQRRI---GAKKKTNMTHVKAVSDVSS--GKQ--------------VRGYVKGV 215
Query: 259 ETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLH 318
++ +L+ E L +I+ + LD+ K+RL+ + EP+ + A +L I+ LQ+ L
Sbjct: 216 ISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLM 275
Query: 319 VFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSY 378
+REKL +N+R+V+ IA++Y G + DL+Q G +GL++ +EKF G R +Y
Sbjct: 276 ECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTY 335
Query: 379 AYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVGIT 438
YWWIR +++A+ +SRT+RLP +++ LG + AK G PS + +A + ++
Sbjct: 336 VYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKG-ITPSIDRIAESLNMS 395
Query: 439 VERFDKLMFMSRIPRSLQQPVWADQE----TTFQEITADSEVD-TPDVSVERELMRRHIR 498
++ SL + + T AD+ ++ P + ++ +
Sbjct: 396 QKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVS 455
Query: 499 NLLS-ILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNS 557
L+S L +E+ IIRL +G+ D T +I GLS+ERVRQ+ AL KLK
Sbjct: 456 KLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 497
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9LD95 | 2.8e-145 | 53.03 | RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ... | [more] |
P26683 | 1.6e-63 | 38.65 | RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT... | [more] |
O22056 | 3.5e-63 | 34.61 | RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV... | [more] |
P38023 | 5.6e-61 | 39.75 | RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ... | [more] |
P74565 | 5.1e-54 | 34.23 | RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa)... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KEQ6 | 0.0e+00 | 99.82 | RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G446410 PE=3 SV=1 | [more] |
A0A1S4E3S8 | 9.4e-277 | 94.42 | RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=36... | [more] |
A0A1S4E4I4 | 9.4e-277 | 94.42 | RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=36... | [more] |
A0A5A7V893 | 2.7e-276 | 94.23 | RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... | [more] |
A0A5D3CAF4 | 5.1e-275 | 94.21 | RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
Match Name | E-value | Identity | Description | |
XP_031742499.1 | 0.0e+00 | 99.82 | RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] >KGN48180.1 hy... | [more] |
XP_038882876.1 | 2.7e-278 | 89.50 | RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida] | [more] |
XP_016902883.1 | 1.9e-276 | 94.42 | PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis m... | [more] |
XP_016902885.1 | 1.9e-276 | 94.42 | PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis m... | [more] |
KAA0063818.1 | 5.6e-276 | 94.23 | RNA polymerase sigma factor sigF [Cucumis melo var. makuwa] | [more] |