CSPI06G24440 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G24440
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 21875557 .. 21875712 (+)
RNA-Seq Expression	CSPI06G24440
Synteny	CSPI06G24440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCCAAGAACAAGCAATAATTCATCCACCACTACCACTCAACCAACCTCAAGTAATTTTCAACAAAATTACAATGATAATGGAGCATTTGTGCAGACCATCACGAGATTCCTCCATGAACTGAGAACCGACCCGACCGAATCCGTCGATAGCTAG

mRNA sequence

AGCCCAAGAACAAGCAATAATTCATCCACCACTACCACTCAACCAACCTCAAGTAATTTTCAACAAAATTACAATGATAATGGAGCATTTGTGCAGACCATCACGAGATTCCTCCATGAACTGAGAACCGACCCGACCGAATCCGTCGATAGCTAG

Coding sequence (CDS)

AGCCCAAGAACAAGCAATAATTCATCCACCACTACCACTCAACCAACCTCAAGTAATTTTCAACAAAATTACAATGATAATGGAGCATTTGTGCAGACCATCACGAGATTCCTCCATGAACTGAGAACCGACCCGACCGAATCCGTCGATAGCTAG

Protein sequence

SPRTSNNSSTTTTQPTSSNFQQNYNDNGAFVQTITRFLHELRTDPTESVDS*

Homology

[Close]

BLAST of CSPI06G24440 vs. ExPASy TrEMBL
Match: A0A6J1CSB9 (uncharacterized protein LOC111013747 OS=Momordica charantia OX=3673 GN=LOC111013747 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-05
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 5  SNNSSTTTTQPTSSNFQQNYNDNGAFVQTITRFLHELRTDPTE 48
          +++SST   QPT S  QQNYND+ AFVQTITRFLHELRTDP+E
Sbjct: 52 ASDSSTIAAQPTPS-CQQNYNDDDAFVQTITRFLHELRTDPSE 93

[Close]

BLAST of CSPI06G24440 vs. ExPASy TrEMBL
Match: A0A6J1I5F9 (uncharacterized protein LOC111471189 OS=Cucurbita maxima OX=3661 GN=LOC111471189 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.9e-05
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 4  TSNNSSTTTTQPTSSNFQQNYNDNGAFVQTITRFLHELRTDPTE 48
          + NN STT TQPTS + QQN ND+ AFVQT+TRFLHEL+TD TE
Sbjct: 50 SDNNLSTTVTQPTSDS-QQNCNDDEAFVQTLTRFLHELKTDTTE 92

[Close]

BLAST of CSPI06G24440 vs. ExPASy TrEMBL
Match: A0A6J1HF45 (uncharacterized protein LOC111463394 OS=Cucurbita moschata OX=3662 GN=LOC111463394 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 4  TSNNSSTTTTQPTSSNFQQNYNDNGAFVQTITRFLHELRTDPTE 48
          + NN STT TQPTS + QQN N++ AFVQT+TRFLHELRTD TE
Sbjct: 50 SDNNLSTTVTQPTSDS-QQNCNNDEAFVQTLTRFLHELRTDTTE 92

[Close]

BLAST of CSPI06G24440 vs. NCBI nr
Match: KAG6595252.1 (hypothetical protein SDJN03_11805, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 4.3e-05
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 6  NNSSTTTTQPTSSNFQQNYNDNGAFVQTITRFLHELRTDPTE 48
          NN STT TQPTS + QQN ND+ AFVQT+TRFLHELRTD TE
Sbjct: 52 NNLSTTVTQPTSDS-QQNCNDDEAFVQTLTRFLHELRTDTTE 92

[Close]

BLAST of CSPI06G24440 vs. NCBI nr
Match: XP_022143962.1 (uncharacterized protein LOC111013747 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 7.3e-05
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 5  SNNSSTTTTQPTSSNFQQNYNDNGAFVQTITRFLHELRTDPTE 48
          +++SST   QPT S  QQNYND+ AFVQTITRFLHELRTDP+E
Sbjct: 52 ASDSSTIAAQPTPS-CQQNYNDDDAFVQTITRFLHELRTDPSE 93

[Close]

BLAST of CSPI06G24440 vs. NCBI nr
Match: XP_023518736.1 (uncharacterized protein LOC111782160 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 4  TSNNSSTTTTQPTSSNFQQNYNDNGAFVQTITRFLHELRTDPTE 48
          + NN STT TQPTS + QQN ND+ AFVQT+TRFLHEL+TD TE
Sbjct: 50 SDNNLSTTVTQPTSDS-QQNCNDDEAFVQTLTRFLHELKTDTTE 92

[Close]

BLAST of CSPI06G24440 vs. NCBI nr
Match: XP_022972657.1 (uncharacterized protein LOC111471189 [Cucurbita maxima])

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 4  TSNNSSTTTTQPTSSNFQQNYNDNGAFVQTITRFLHELRTDPTE 48
          + NN STT TQPTS + QQN ND+ AFVQT+TRFLHEL+TD TE
Sbjct: 50 SDNNLSTTVTQPTSDS-QQNCNDDEAFVQTLTRFLHELKTDTTE 92

[Close]

BLAST of CSPI06G24440 vs. NCBI nr
Match: XP_022963091.1 (uncharacterized protein LOC111463394 [Cucurbita moschata])

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 4  TSNNSSTTTTQPTSSNFQQNYNDNGAFVQTITRFLHELRTDPTE 48
          + NN STT TQPTS + QQN N++ AFVQT+TRFLHELRTD TE
Sbjct: 50 SDNNLSTTVTQPTSDS-QQNCNNDEAFVQTLTRFLHELRTDTTE 92

The following BLAST results are available for this feature:

BLAST of CSPI06G24440 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G24440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSB9	3.6e-05	72.09	uncharacterized protein LOC111013747 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1I5F9	7.9e-05	70.45	uncharacterized protein LOC111471189 OS=Cucurbita maxima OX=3661 GN=LOC111471189...	[more]
A0A6J1HF45	1.4e-04	70.45	uncharacterized protein LOC111463394 OS=Cucurbita moschata OX=3662 GN=LOC1114633...	[more]

BLAST of CSPI06G24440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595252.1	4.3e-05	76.19	hypothetical protein SDJN03_11805, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022143962.1	7.3e-05	72.09	uncharacterized protein LOC111013747 [Momordica charantia]	[more]
XP_023518736.1	1.6e-04	70.45	uncharacterized protein LOC111782160 [Cucurbita pepo subsp. pepo]	[more]
XP_022972657.1	1.6e-04	70.45	uncharacterized protein LOC111471189 [Cucurbita maxima]	[more]
XP_022963091.1	2.8e-04	70.45	uncharacterized protein LOC111463394 [Cucurbita moschata]	[more]

BLAST of CSPI06G24440 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G24440.1	CSPI06G24440.1	mRNA