CSPI06G24410 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G24410
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 21851940 .. 21852200 (+)
RNA-Seq Expression	CSPI06G24410
Synteny	CSPI06G24410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAGAAAGTGGAAGAAGGAGAGAAGAGTAAAAGGGGGGGGAGGGAGAAAAACGACAAGTCGGCAATGATCGATAAAAAACGGGAACGCAGCATCGACGTAACAAGCCAACAGATTAGGGGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCTTCCTACACGTGGCCACTCAATGCCAAAGTGGTGAGGTCAAGTGGGACCACCCAAAGACAAGTAAATGAAGAACCGTTGATTTGGCTGACGGTGAGATGA

mRNA sequence

ATGGGTGAGAAAGTGGAAGAAGGAGAGAAGAGTAAAAGGGGGGGGAGGGAGAAAAACGACAAGTCGGCAATGATCGATAAAAAACGGGAACGCAGCATCGACGTAACAAGCCAACAGATTAGGGGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCTTCCTACACGTGGCCACTCAATGCCAAAGTGGTGAGGTCAAGTGGGACCACCCAAAGACAAGTAAATGAAGAACCGTTGATTTGGCTGACGGTGAGATGA

Coding sequence (CDS)

ATGGGTGAGAAAGTGGAAGAAGGAGAGAAGAGTAAAAGGGGGGGGAGGGAGAAAAACGACAAGTCGGCAATGATCGATAAAAAACGGGAACGCAGCATCGACGTAACAAGCCAACAGATTAGGGGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCTTCCTACACGTGGCCACTCAATGCCAAAGTGGTGAGGTCAAGTGGGACCACCCAAAGACAAGTAAATGAAGAACCGTTGATTTGGCTGACGGTGAGATGA

Protein sequence

MGEKVEEGEKSKRGGREKNDKSAMIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWLTVR*

Homology

[Close]

BLAST of CSPI06G24410 vs. ExPASy TrEMBL
Match: A0A0A0KK67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445200 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.2e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 24 MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL 83
          MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL
Sbjct: 1  MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL 60

Query: 84 TVR 87
          TVR
Sbjct: 61 TVR 63

[Close]

BLAST of CSPI06G24410 vs. NCBI nr
Match: KGN48156.1 (hypothetical protein Csa_004099 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 8.8e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 24 MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL 83
          MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL
Sbjct: 1  MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL 60

Query: 84 TVR 87
          TVR
Sbjct: 61 TVR 63

The following BLAST results are available for this feature:

BLAST of CSPI06G24410 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G24410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK67	4.2e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445200 PE=4 SV=1	[more]

BLAST of CSPI06G24410 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48156.1	8.8e-27	100.00	hypothetical protein Csa_004099 [Cucumis sativus]	[more]

BLAST of CSPI06G24410 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G24410.1	CSPI06G24410.1	mRNA