CSPI06G22990 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G22990
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionsquamosa promoter-binding-like protein 6
LocationChr6: 20729319 .. 20729537 (-)
RNA-Seq ExpressionCSPI06G22990
SyntenyCSPI06G22990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGTCACATACTGACGTGTGGAAGTAGTGATCGAACTGTCACCTTTCAGATTCCTGGTAGAGTTCTTCATAGATCAGGTTTGGCAAATCCTAAAGCTAACATTTCCTATGAACGCACTCCATTGACTTGCTACAACTTCCATCACAACTTCAGCGAGTGGAACATCAGAGGCACTCAAACTTTGTCTTCACAAGCAACCTTTTTTCTGGCTTAA

mRNA sequence

ATGGGTCGTCACATACTGACGTGTGGAAGTAGTGATCGAACTGTCACCTTTCAGATTCCTGGTAGAGTTCTTCATAGATCAGGTTTGGCAAATCCTAAAGCTAACATTTCCTATGAACGCACTCCATTGACTTGCTACAACTTCCATCACAACTTCAGCGAGTGGAACATCAGAGGCACTCAAACTTTGTCTTCACAAGCAACCTTTTTTCTGGCTTAA

Coding sequence (CDS)

ATGGGTCGTCACATACTGACGTGTGGAAGTAGTGATCGAACTGTCACCTTTCAGATTCCTGGTAGAGTTCTTCATAGATCAGGTTTGGCAAATCCTAAAGCTAACATTTCCTATGAACGCACTCCATTGACTTGCTACAACTTCCATCACAACTTCAGCGAGTGGAACATCAGAGGCACTCAAACTTTGTCTTCACAAGCAACCTTTTTTCTGGCTTAA

Protein sequence

MGRHILTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTPLTCYNFHHNFSEWNIRGTQTLSSQATFFLA*
Homology
[Close]
BLAST of CSPI06G22990 vs. ExPASy TrEMBL
Match: A0A0A0LQA6 (SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039890 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.2e-12
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 5   ILTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP 43
           I TCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP
Sbjct: 486 IPTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP 523

[Close]
BLAST of CSPI06G22990 vs. ExPASy TrEMBL
Match: A0A1S3BWK9 (squamosa promoter-binding-like protein 12 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493906 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.6e-11
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 5   ILTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP 43
           I TC SSDRTVTFQIPGRVLHRSGLANPKANISYERTP
Sbjct: 486 IPTCESSDRTVTFQIPGRVLHRSGLANPKANISYERTP 523

[Close]
BLAST of CSPI06G22990 vs. ExPASy TrEMBL
Match: A0A1S4DTN9 (squamosa promoter-binding-like protein 12 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493906 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.6e-11
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 5   ILTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP 43
           I TC SSDRTVTFQIPGRVLHRSGLANPKANISYERTP
Sbjct: 486 IPTCESSDRTVTFQIPGRVLHRSGLANPKANISYERTP 523

[Close]
BLAST of CSPI06G22990 vs. ExPASy TrEMBL
Match: A0A6J1E6L2 (squamosa promoter-binding-like protein 6 OS=Cucurbita moschata OX=3662 GN=LOC111431270 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 5   ILTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP 43
           ILTC  SDRTV FQIP  VLHRSGLAN KAN+SYE TP
Sbjct: 458 ILTCDRSDRTVAFQIPDGVLHRSGLANSKANLSYEHTP 495

[Close]
BLAST of CSPI06G22990 vs. ExPASy TrEMBL
Match: A0A6J1KM04 (squamosa promoter-binding-like protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111495395 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.1e-07
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 5   ILTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP 43
           ILTC  +DRTV FQIP  VLHRSGL N KAN+SYE TP
Sbjct: 458 ILTCDRNDRTVAFQIPDGVLHRSGLVNSKANLSYEHTP 495

[Close]
BLAST of CSPI06G22990 vs. NCBI nr
Match: XP_004137448.1 (squamosa promoter-binding-like protein 6 isoform X1 [Cucumis sativus] >KGN64075.1 hypothetical protein Csa_013482 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 8.7e-12
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 5   ILTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP 43
           I TCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP
Sbjct: 486 IPTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP 523

[Close]
BLAST of CSPI06G22990 vs. NCBI nr
Match: XP_031738806.1 (squamosa promoter-binding-like protein 6 isoform X2 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 8.7e-12
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 5   ILTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP 43
           I TCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP
Sbjct: 486 IPTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP 523

[Close]
BLAST of CSPI06G22990 vs. NCBI nr
Match: XP_008453118.1 (PREDICTED: squamosa promoter-binding-like protein 12 isoform X1 [Cucumis melo] >XP_016899321.1 PREDICTED: squamosa promoter-binding-like protein 12 isoform X1 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 7.4e-11
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 5   ILTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP 43
           I TC SSDRTVTFQIPGRVLHRSGLANPKANISYERTP
Sbjct: 486 IPTCESSDRTVTFQIPGRVLHRSGLANPKANISYERTP 523

[Close]
BLAST of CSPI06G22990 vs. NCBI nr
Match: XP_016899323.1 (PREDICTED: squamosa promoter-binding-like protein 12 isoform X2 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 7.4e-11
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 5   ILTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP 43
           I TC SSDRTVTFQIPGRVLHRSGLANPKANISYERTP
Sbjct: 486 IPTCESSDRTVTFQIPGRVLHRSGLANPKANISYERTP 523

[Close]
BLAST of CSPI06G22990 vs. NCBI nr
Match: XP_038894426.1 (squamosa promoter-binding-like protein 13A [Benincasa hispida] >XP_038894427.1 squamosa promoter-binding-like protein 13A [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 3.1e-09
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 5   ILTCGSSDRTVTFQIPGRVLHRSGLANPKANISYERTP 43
           I TC S DRTVTFQIP RVLHRSGLANPKAN+SYERTP
Sbjct: 486 IPTCESCDRTVTFQIPDRVLHRSGLANPKANLSYERTP 523

The following BLAST results are available for this feature:
BLAST of CSPI06G22990 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G22990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQA64.2e-1297.37SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039890 PE... [more]
A0A1S3BWK93.6e-1194.74squamosa promoter-binding-like protein 12 isoform X1 OS=Cucumis melo OX=3656 GN=... [more]
A0A1S4DTN93.6e-1194.74squamosa promoter-binding-like protein 12 isoform X2 OS=Cucumis melo OX=3656 GN=... [more]
A0A6J1E6L21.4e-0778.95squamosa promoter-binding-like protein 6 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1KM049.1e-0773.68squamosa promoter-binding-like protein 17 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
BLAST of CSPI06G22990 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137448.18.7e-1297.37squamosa promoter-binding-like protein 6 isoform X1 [Cucumis sativus] >KGN64075.... [more]
XP_031738806.18.7e-1297.37squamosa promoter-binding-like protein 6 isoform X2 [Cucumis sativus][more]
XP_008453118.17.4e-1194.74PREDICTED: squamosa promoter-binding-like protein 12 isoform X1 [Cucumis melo] >... [more]
XP_016899323.17.4e-1194.74PREDICTED: squamosa promoter-binding-like protein 12 isoform X2 [Cucumis melo][more]
XP_038894426.13.1e-0986.84squamosa promoter-binding-like protein 13A [Benincasa hispida] >XP_038894427.1 s... [more]
BLAST of CSPI06G22990 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G22990.1CSPI06G22990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding