CSPI06G21690 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G21690
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDUF4219 domain-containing protein
LocationChr6: 19623248 .. 19623771 (-)
RNA-Seq ExpressionCSPI06G21690
SyntenyCSPI06G21690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGATCGTCTTAAGTTATTGGAGGAATCAAGATGCTCAACATTCATAATTACAAAACATAGTTCACATGCATGAACTCGTATCTCCAAGGCCAAGACTTATGGGATGTGGTAGGAGATACTAAAGTTAACCCACTTAAGGAAATTGTTGCTTTGAAGAACTGGAATGTCAAGGCAGGTAAGGTCATGTTTGCAATCAAAACTACAGTTGATGAAGAAATGTTGGAGCACACATTAGTATTGTTGAGATGCCAAAGAAAGCATGGCATACATGCACCTTACTTTTCTCAAAGAGAAATGATACAAGATTTTAACTTCTAGAGAATGAGCTCTTGTCAATTAATTGATCAAAGGGAGATGATTATCAATAAATATTTCACCAAGGTAAGAGTTCTATATCATGAAATCTGTGAATTAGATTCTACTTCTGTTATTTCAGAATCAAGAATAAGAAGAGTTATTATCTATGGTCTTAAACCTAAACAGAAAAACTTTGTTGCTCCTGTTCAAGGTTGGGAAGTATAA

mRNA sequence

GGAGATCGTCTTAAGTTATTGGAGGAATCAAGATGCTCAACATTCATAATTACAAAACATAGTTCACATGCATGAACTCGTATCTCCAAGGCCAAGACTTATGGGATGTGGTAGGAGATACTAAAGTTAACCCACTTAAGGAAATTGTTGCTTTGAAGAACTGGAATGTCAAGGCAGAATCAAGAATAAGAAGAGTTATTATCTATGGTCTTAAACCTAAACAGAAAAACTTTGTTGCTCCTGTTCAAGGTTGGGAAGTATAA

Coding sequence (CDS)

ATGAACTCGTATCTCCAAGGCCAAGACTTATGGGATGTGGTAGGAGATACTAAAGTTAACCCACTTAAGGAAATTGTTGCTTTGAAGAACTGGAATGTCAAGGCAGAATCAAGAATAAGAAGAGTTATTATCTATGGTCTTAAACCTAAACAGAAAAACTTTGTTGCTCCTGTTCAAGGTTGGGAAGTATAA

Protein sequence

MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQGWEV*
Homology
BLAST of CSPI06G21690 vs. ExPASy TrEMBL
Match: A0A0A0KE75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G407140 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.4e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0

Query: 1  MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQG 60
          MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQG
Sbjct: 1  MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQG 60

Query: 61 WEV 64
          WEV
Sbjct: 61 WEV 63

BLAST of CSPI06G21690 vs. ExPASy TrEMBL
Match: A0A5D3BN03 (Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00130 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.1e-07
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKA 36
          M SYLQGQDLWDVVG TKVNP +++ ALK WN+KA
Sbjct: 27 MKSYLQGQDLWDVVGGTKVNPSEDVAALKKWNIKA 61

BLAST of CSPI06G21690 vs. ExPASy TrEMBL
Match: A0A5D3BRZ9 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00890 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-06
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 0

Query: 1  MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRI 40
          M SYLQ QDLWD+VG T+VNP ++IVALK WNVK E+ +
Sbjct: 1  MKSYLQDQDLWDIVGGTEVNPPEDIVALKKWNVKEENML 39

BLAST of CSPI06G21690 vs. ExPASy TrEMBL
Match: A0A6A2XYH3 (Putative RING/U-box superfamily protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111671pilonHSYRG00155 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-06
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 1   MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQG 60
           M SYLQGQDLW+VVG  +++P   I          E+ I+R+I++GL+P+ + FVA VQG
Sbjct: 338 MESYLQGQDLWEVVGG-ELDPTAAI---------GEAMIKRIIVHGLRPEYRGFVAVVQG 388

Query: 61  W 62
           W
Sbjct: 398 W 388

BLAST of CSPI06G21690 vs. ExPASy TrEMBL
Match: A0A5A7U2L5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001970 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.2e-06
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 1  MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVII 45
          M SYLQ QDLWD+VG T+VNP ++IVALK WN+K   +I   +I
Sbjct: 1  MKSYLQDQDLWDIVGGTEVNPPEDIVALKKWNIKPGCKIEPSLI 44

BLAST of CSPI06G21690 vs. NCBI nr
Match: KAE8647312.1 (hypothetical protein Csa_004446 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 3.0e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 7   GQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQGWE 63
           GQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQGWE
Sbjct: 292 GQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQGWE 347

BLAST of CSPI06G21690 vs. NCBI nr
Match: XP_038890291.1 (LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida])

HSP 1 Score: 76.6 bits (187), Expect = 8.4e-11
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 4    YLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQGWEV 63
            YLQGQDLWDV G  +V+  + +VA K WN+KAE  +R  II+GLKP+ ++F+  +QGW V
Sbjct: 1091 YLQGQDLWDVTGGIEVHSPENVVASKKWNIKAELGMRGFIIHGLKPEYRSFIVAIQGWIV 1150

BLAST of CSPI06G21690 vs. NCBI nr
Match: XP_039160975.1 (uncharacterized protein LOC120289716 [Eucalyptus grandis])

HSP 1 Score: 63.2 bits (152), Expect = 9.7e-07
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 0

Query: 1  MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVK-------AESRIRRVIIYGLKPKQKN 60
          M  YL GQDLWD+VG     P      L+ WNVK       +E+R+RR+I++GL+P+   
Sbjct: 26 MRYYLLGQDLWDIVGGNNTTPPTNDSDLRKWNVKSDPENAISETRMRRIILHGLRPEYNG 85

Query: 61 FVAPVQGW 62
           V   +GW
Sbjct: 86 IVTATRGW 93

BLAST of CSPI06G21690 vs. NCBI nr
Match: KAA0047146.1 (putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa] >TYK01143.1 putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKA 36
          M SYLQGQDLWDVVG TKVNP +++ ALK WN+KA
Sbjct: 27 MKSYLQGQDLWDVVGGTKVNPSEDVAALKKWNIKA 61

BLAST of CSPI06G21690 vs. NCBI nr
Match: KAG6469560.1 (hypothetical protein ZIOFF_070489 [Zingiber officinale])

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 1  MNSYLQGQDLWDVV-GDTKVNPLKEIVA-LKNWNVKA---------ESRIRRVIIYGLKP 60
          M SYLQGQDLW+VV G   + P ++    L  W +KA         E++I+R+II+GLK 
Sbjct: 24 MESYLQGQDLWEVVSGSEAMQPTEDANGILPKWRIKAELDPATPIGETKIKRIIIHGLKL 83

Query: 61 KQKNFVAPVQGW 62
          + + FVA +QGW
Sbjct: 84 EYRGFVASIQGW 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KE757.4e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G407140 PE=4 SV=1[more]
A0A5D3BN036.1e-0774.29Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. ... [more]
A0A5D3BRZ92.3e-0666.67Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3... [more]
A0A6A2XYH34.0e-0647.54Putative RING/U-box superfamily protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_... [more]
A0A5A7U2L55.2e-0659.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAE8647312.13.0e-24100.00hypothetical protein Csa_004446 [Cucumis sativus][more]
XP_038890291.18.4e-1153.33LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida][more]
XP_039160975.19.7e-0741.18uncharacterized protein LOC120289716 [Eucalyptus grandis][more]
KAA0047146.11.3e-0674.29putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. ma... [more]
KAG6469560.12.2e-0644.44hypothetical protein ZIOFF_070489 [Zingiber officinale][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G21690.1CSPI06G21690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
molecular_function GO:0016301 kinase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding