CSPI06G21600 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G21600
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionS4 RNA-binding domain-containing protein
LocationChr6: 19532469 .. 19540483 (+)
RNA-Seq ExpressionCSPI06G21600
SyntenyCSPI06G21600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAATCGTATAAACACGAAAGCGAGTTCGCGAATTCAATAAACTGTTTCACAGAACAAGAATTTCCATTCAAGAAATGGTTTCATTAGCATCTTCTTCACTCTTACTTCTCTCAAAACCTTCGTTAATCTTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCACTTTCATCCAATTCCAAACCCAACGCCTCCTCTTCATCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCCCCGAAACCCAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAAATTCCGGCGGTCAGCTCTTCATTCCGTGGATAGTTCGCGGCGAAGATGGGAACCTCAAGCTCCAGTCTCATCCTCCTACACGGTTCCTTCATTCCGTGTCGGAGGATGAAACCAAGCCCAAGAAGAAGAAGGTTTCTGCTGGTAAACCCATAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGGTTTTATAATGAGAACATTAGGGAGTCGTCGCAGCGTCTGAGTAAAGTTCTTGCTGCCGCTGGAGGTTGGTGCTTCTCTAACCAAAATGCTAATTCTGTTACTCTGCATTCCTTTCTGTGTTATGTGCTCTTTACTTGTTGGTGTTTAGTTCTTGGCGTGGTGGCTAGAAGTCCTGTTATTTTCGGAAACTATTTAGTTATGTCTACAACAGGTTTTGGCAATAGGATGGAAGCAATAAGTATCAATTTCTAGTTTAGTTAGTAGAATTTGTAAGTATAGTTGCAAATCGGTACTAAATTTGATTTACGTCGCATGAACCTCAAGTTATTTATTTCACGTGGATAGAAATAGAGAGATTGAACAAACTGAGCGGTTTCTACACTAGTGTTATGCGATATACTAGCTTAAATATGGTCTCACCAACAACACTATACTCCAAGAAAAAAGAATCAAAACAGCACAACGGACCCAGATTAACGAAGGCTCTAATCAATTGAGTAGAGGAAAATTTAATAGGAGCTTAAGCTCCTGTTGGAATGAAACTTATGTGATTCTTTCCTTAGGGCCGGGTCCTTTTAATTCGTTCCGTTTCATTCTTTCATGAGTGGATATATTTTTTCAAGTCTTAACCAACTTGAAGGAGGGTCATATTGTTTTTTGAAACATTTTCTTTCATTGAGGAAGAATAAATGAATATAAGACATTAAAAAGAGTAGTGAATTAGGAAGAAAAACTCTACTAAAGAAAAATTTTCCAATTAGGTAAAGTAGTGTGAGAGTAACTTGAAGAAGGGACATGATTATCCGGATGACCACTAGTTAATCTATAATATATATCTTATTCAAATTGTATCTTAATCTTTTTCACAAGTACATTTTTCAATGAAAATTTTTCACTTTTTATTCATAAAGTTGTTGACATTTGGTTTATTCTCCACAAAGTTGAATTCATTGGATATTGTGAATGAGGTATTGCTTTTGCAAGAAACTTAGGTACTAGAGTGAGTAAATTTATCATCATATGAATTTGTTGGGCTTAGACTATCTTATGTGTACAAGGTTCGGTATTTTCTGATTTTTGGTGATATTATTCATATGACAGCTCTTCCATCTTGAACCTTCTATTATTCTTGTTCTTGCAACATCTACTTATTTGTGGCCTTATTTTTTTCTCACCGTCTACGAATACTTTTTGATTTTGCATGTTTGGTAGTCTGTGATCTGTTATTTGCTTTTGGTTAGGTTTAAGGGAAATTCTTCTCTTTGAGTTCCATTTTCATTGTAAAACCACGAATGGCCAACTATGTAAATTGACACGTACTGTCAAAATGCGTTTGGCAAGTCATGGTAATAAGATCAATTGTTTATAAAATTAAATGTTGGAACATGTTGGATAATGTGTTTGGTAAAGCCATGGTGTACTCTCTCAAAGCTCCTTCTTCTCCGTTACTATTACTTTGTATTAGATCTTTTAATAGTCATGACCTAGTGAAGATTTCCGTTTTGAAAGTTAGTTCCGGATATATGAGGGTGCTAAGGGGTGTCAACCTAGTTGAGATGTTTGGGTGTGCTTGTTGATCCTCTATAAAAAGCTATTGTATAATCCTCTTGTAATATAAGTTTTAGTCTCATTTTCTCTTTTTAATAAAGAGACTTGTTTCTGTTAAAAAAAAAAAACATTTGGCCCGAGAGAAAGGAAGAGGTAGAGATATCTTGTGGAGGTCTGGACTACAACCTGGTTAATATTTGCTCCCCTTTTGGTATTAATTTTCAAAGTTCTATCTATCCTCTATCCATTCTCCCCAACAACTGGATCCTTTTTTACAGTGGTAGGCACTTAAGTTGGAATATTTCTGTAGAATACCTTGTTGTTTCTAGCTAGCCTCAACCCCTGTTAGGACGAGGGCCGCGGATGAAAATTCAGTTGTATACAATTTGGTCAAGCTTGTAAGGATAAATTATAATTTTTTTTTTTTTTTTTTTTTTTTTGTGTTCTATTGTTTAGCATTGGACACGGTGTGTTCTGTTTCATCTTCCTCTGCAGTGTCATTATATATATATTAAAACAAAAATGAAAGAATACAGCGGCGTTAAAAAAAGCCCACAAAATGAAGGGGTTCTAGCTAAGTAAAATGTTTTCTAGAGAATAGTTAAAAAAAAAGCTTCAAGACAGAATACCCAAAGGGACCCTAAAAATCTCACCAAAGATCAAATCTCACAAGGGTACTTGTCCCTACTGCTAAACACTCTATCATTCCTCTCCCCCAATATCCCAAACAATTGCACACACCCCAACAAGCCAAAAAATACTCTCTCTAAAAGGCGGATGGAGGAGGAACTCCTCTATTGCTGCACAAACATCTCTCTGCCCAGCAATGTCCTGTTTACATTAATTACCATTATGCGCTCAAGATCTCATAGTTGGTATTATACTCCTCTTTTGTTTTTCAGTGGCATCAAGACGGAGTAGTGAAGAGCTTATATTTGGAGGCCGCGTTACTGTTAATGGTTCTGTTTGCAATACTCCTCAGGTTGGTTTTTATGTAATTTGGGTTGTATGGATTTTGTCTTAACTATGAAGGTACAAATGATTTCACCTTTCTGCAGACTCGGGTTGATCCTGCAAGAGACATTATTTACGTGAATGGTAATAGGCTTCCTAAGAAACTGCCTCCAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTAGGTCACTTATTCTCTAAGACCAATTTCCCTTTCCTATCCCTACCCCAAGCTTCTCTTGGGAACTTGGCTTTTATGTTCTTCCGTTGCTAATCTATAGAATGCGATGGCAGGTATATTTGTTCATCTGGGAAAAAAGAGTCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGTATGTCAAACTCAAACCTACTGATCATACCGTTTTCAAGCAAAAGAGTGATAACCTTATGATCATTTTGATGCAATAAATATAGTTTGCAAGTTAATGAACTACAACTTTGTCTTTGCAGGATAAAACATATCCAGGGCAACCCAAACCACGGCTCTTTACAGTTGGCAGACTTGATGTTGCAACGACTGGGTTGATTATAGTGACAAATGATGGTATGGTATACATAATCTCATGGTTGCCTCCTTATTTAGGATTGCTGTACAAAAGGTTTGGAGTTTAAAGGATAGATCTTGAACCCTTTGCAAAATTACCATTGATTTTCTTTTTCAGGAGATTTTGCTCAAGGTATCTCACATCCTTCATCTGGTTTATCGAAGGAGTAAGTGATTTAAATTTATTTCCATACACTTTCTAATGCATTGTAAAGTTACCTACACAAGTAACTTCTGGCATTATTTCCAGGGAGTAATCTAGAGATAGACTGGCTTGAAAAAATCTTTGAAACTATAAACATCATATGAGGAATGATTGTGGGCTATGGCCTATAAGTCTGTCGTATTTATTGAATGAAAATTACTGGAACCTTTATTTACTGACCATTTCAGGGATGAGAAATATTGGACTGATCATCTTTTTTAGTTCTTTTTTCCCCATAAAATTTTGAATTAGAGCATTTTCTTTTTTATATTGTGCTTCCCAGTACATATAGCTTTTAAAATTTTGAATGTTGGATTTCTGAAAAATGAAAATGCAACATTTGCTCTTTATAATTGTAGATACATTGCAGCAATAGATGGCACTGTTAGTAAGCAGAACCTGATAGCAATTAGTGAGGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCCGTGGAGTTGCTACCACGGCAGCCAGATATATCAAAGTCTCGTCTGCGTATCGTGGTGCTTTATCCATTCATATTATAGTTTTTAAATATCTATTCACTTTCAGTGCATTCATCACTTCTTGTTTGATCTAATTGGTCATGAAGTAATTATTATATACACCAACAAAGTCTGCTGCTTTTACCTTAATTGTTTTTCTTTATCTGTATTCTATTATTGTTGATGCTATACAGTAGTCTGTGGAGGAAAATGTATTAATACCATTTTTTCTGCATGCAGCGCTAGTCATGCATTAGCTCCCGACTAACTTATTGTGCTTTTGCAGGTACATGAAGGAAGGAACCATGAAGTTAGGGAACTCATAAAAGCTGCTGGTTTAGAGGTTAGCATCTGTTCTGACCTTAGTAGACACTTGTCCATTGCTGTGAGGAAGAAGAAATGTTTCATTTTACTTTTTTCATAATACTTTCTTAACAATAACGATAACAATGGGGAAGAAGAAATGTTTCATTTTCTTTTTAGGGGCCTTGTTGTATCTTTTTGTTCTTGTTGGTACCTCTGCACTGTAGGCCTTTGTTATAGTTAGCTATAGTTCATGAAAGATTTTTTTTGAACTTATAAATATAAACATGTATTTACCTACCTTGTGTGAGTTTTTTTCCTGCCATTTATTCATGATAGCCACACTATATACTCGGACGTAAGGAAACTGGGAATATGACATCAAGGGAGATATCTTTTTAGTGCCATTTTAACTACTTGTTCTATTGCTTGCGTTTGTCTGCTAGTTCTATTTGCATGTGTAATTTCTGGAATTTATTGAAACAGATCTATTCATTAAAGCGTGTAAGGATCGGAGGCTTCAGACTTCCATCAGATTTGGGGTAATTTCTTGTTGTGATCACTTTTGATTTATTTTTTATTTGTCAAACTTATTATTGCTTGGGAATGGGTTCAAAATCAGATTAGATGACTCACTTGCAATTCATTTTCACATAACAAAAAGCAAATAATTAAGGCAAACAATTACTCCTATTTTTGCATGTAAGTATTCGGAAATGTTGGTGACTAGTATGTTTCTAGGAAAATTGCATTAGATGACAAAAAAAAAGGAAAATTGGAATGGATAACCATTTCAGCAATAATAATTAAGGATATAGCAAAATTTTTAAAAAAATTGCAAATATAGCAAAACTATCACTGATAGATTTGTATCGTTGATACACTTCGTATGGTCTATCAATGATAGACCAATATTTGCAACATGGTCTATTGTTGATAGACTTATATCAATGATAGAATTTGAAAAATTTTGCTATATTTGCAAATTTTTTAAAATGTTGCTATATAATTTAATTATTTTGAATCTGATTGCTAAATTTGCAACTACCAAAAAAAAAATTAGAAAAAAACAGCTCACAACACCTCTTTTTTGCATATTGCAAATTTGACAAATATGGCTAGTAAATGACGGTAATCATACTGTAATTTACTTTTAAATTTGCCATTTTTTGCAATTTAGAAAATGTAGGTGACATGGACTCTGTTATCATAATTTTTTTTGCTATTTTTGTAGACTCCTCATGTTTCAGCATGTTACTGTGATTTGCTGTCAGAATACTAACCAAATAAAAACACCTTTTTCAACCGAACAACAAAAACACCTATTTCAACCGAACAACGAAGATTTTAAAAGTTTATTCTTGAAGATAAATTGAAAGTAAAACAGTTTTAATACTTGAAATAAATTTTATCACAAATGATGATCAGGTGGATATAATTCATTCTCTCTGTCAATTCTTTCTTCAAGATTCCCTTTTTATCTTCGGCCACAACCCTCAAGACTGTGCAACATATTTTCATTTTTTGTACAGTTTCTCGAGTTGAAACTAGAAAGACTTTGAAGTTTTAGCTGCTTACTTGTGAACATGAATGAGATAAATGTGTTGCCATGTAGATTTTTAAAAAATTTCTGCATTATTTCAGGCTTGGAAGTTACACTGAACTAAAGCAAAGTGAACTGAAGGCAATTGGTTGGAAAAGTTGAGTTTCTGATGATTACAGAGTCGTCCATAGTTGTTGAAGCTTGAATGTGGTAGGAATGATTTCAGACATACCACATGGAAGCTGAGTACTACTTCTCTAACTGCTGGGACAGTATATCAACATTTGAAGAGGTTGGATACCGTTTATTCCAGCTCACGCTTCACACCATGGCCACTGATTATTTACAATTATTCTTGGGTTGAAGATTTCAGTCAACATTGAAGGTGCAGGTTGTCAACCATCAAATTTTATAGATGATATGAATGACGTGCGATGCCATTCTATTATCCAATTATTTTCATCTCATTGTGTATTATACTGAACAGTAAAGGAACATACAGGTAGTTGCAATGGTGCCTTTTCTCTCACCTCATTGAAAGTGGGTGTGGAGGGTATTCTAACACCCGGCCTTAATCTTGTATTCATTACTCATATATGCCTTCACATTTAATTATATTCTTTTCTCAACTTTCTTTAGTCATCTTCTCCTGCTTACAAACTCTTCCAGCAGATTCTAGGATCAACATTGCGGACAGATGAGGTTTCTGTATGAAGCTCATAAAGCTTCGTTTAGCAAGGAAACATCTTATATGGATTGCAAGTTCAACATGCTTTGACTTTGAAAGCTCGTATGTTAGAAGGTAAGAGCCTTTACTGACAATATTCTTTCATTTTGTTCTTAACAAAAGAAAAAAAAAAAAAACCGTTCATTTTGTTGTTTTTATCTCTTGCATCTATCCCTATAGAATACAACATATGGTACAAATTTTCCTGGTCCCTATATGACTTTTGTCATCCTACGAGTCTTCTGACTAGTTTTATTTTCAATATATTTCGCTTCATTTGATTGAAACAAGATTTGCAGTACTGGATCAACGTTAAACTAGAAAACTGAAATAAGGATGATAGAAAAAAAAAATACTTGAACGGAATGGGGGATTGGAAAAAATTTCATTGATAAATAAAATATCCAGAAAGTCGGTGGACGATAAAAAATACAAGACGAGCCGATGTGCAACCCAATCAGTTGAAAAAAATACAAATGTACTACTACCATAGGGTGTACCAGGGCGACATAAAAGGATAGAAGAATAGATAGTTGTAAAACGGATTGACGTTGCAAGAAACCCACAAATAAGGGGAAAACTACACAAAGCAACAATCCCATACACTCCAAAAGCAGGAGAGGAATCAAGCCAAAAACACTCATAGGCAACCAATCACAAAGCCAAAAAGAGGAAGGGAGATATCACAGAGCTCTAGTAATGGCATTCAAACCGACAAAGAGACTCCTCTCGAAGCAAAGATTTAGCCGTTTAATCAAAATAGATCGAGCCCTCTAGCTTAACTTTTTATTCCGTCCAGCCATTCATTTTTTTAAGATCCATGTTCTTTCTAAAATAACTAGAGATCTGGGAACATGGATTTTGCTCTAATCCCACAAATTCAAGATCAAAACTGGCCCATTTCTTAGCTTAACTTTCTATTTAGTCCTGATAGCTTCAATTTTATTAAGATCTATGTAGTATTTGAAATAAGTTGAGATCTGGGAACATGGTTTTTGTCCAAATTCCAGCTTGCACCGACTACAAACAAAACTGCCATCCCATGTCAGCAGAATGAAGCAACAGAAAACAAACGGACAGCAGAGCCTCTCTTGTTCTACAGTACCAACGGAATCGTCCTTAAGGTTGACAAAATGGATATTATACAATGG

mRNA sequence

CCAATCGTATAAACACGAAAGCGAGTTCGCGAATTCAATAAACTGTTTCACAGAACAAGAATTTCCATTCAAGAAATGGTTTCATTAGCATCTTCTTCACTCTTACTTCTCTCAAAACCTTCGTTAATCTTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCACTTTCATCCAATTCCAAACCCAACGCCTCCTCTTCATCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCCCCGAAACCCAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAAATTCCGGCGGTCAGCTCTTCATTCCGTGGATAGTTCGCGGCGAAGATGGGAACCTCAAGCTCCAGTCTCATCCTCCTACACGGTTCCTTCATTCCGTGTCGGAGGATGAAACCAAGCCCAAGAAGAAGAAGGTTTCTGCTGGTAAACCCATAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGGTTTTATAATGAGAACATTAGGGAGTCGTCGCAGCGTCTGAGTAAAGTTCTTGCTGCCGCTGGAGTGGCATCAAGACGGAGTAGTGAAGAGCTTATATTTGGAGGCCGCGTTACTGTTAATGGTTCTGTTTGCAATACTCCTCAGACTCGGGTTGATCCTGCAAGAGACATTATTTACGTGAATGGTAATAGGCTTCCTAAGAAACTGCCTCCAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTATATTTGTTCATCTGGGAAAAAAGAGTCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGATAAAACATATCCAGGGCAACCCAAACCACGGCTCTTTACAGTTGGCAGACTTGATGTTGCAACGACTGGGTTGATTATAGTGACAAATGATGGAGATTTTGCTCAAGGTATCTCACATCCTTCATCTGGTTTATCGAAGGAATACATTGCAGCAATAGATGGCACTGTTAGTAAGCAGAACCTGATAGCAATTAGTGAGGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCCGTGGAGTTGCTACCACGGCAGCCAGATATATCAAAGTCTCGTCTGCGTATCGTGGTACATGAAGGAAGGAACCATGAAGTTAGGGAACTCATAAAAGCTGCTGGTTTAGAGATCTATTCATTAAAGCGTGTAAGGATCGGAGGCTTCAGACTTCCATCAGATTTGGGGCTTGGAAGTTACACTGAACTAAAGCAAAGTGAACTGAAGGCAATTGGTTGGAAAAGTTGAGTTTCTGATGATTACAGAGTCGTCCATAGTTGTTGAAGCTTGAATGTGGTAGGAATGATTTCAGACATACCACATGGAAGCTGAGTACTACTTCTCTAACTGCTGGGACAGTATATCAACATTTGAAGAGGTTGGATACCGTTTATTCCAGCTCACGCTTCACACCATGGCCACTGATTATTTACAATTATTCTTGGGTTGAAGATTTCAGTCAACATTGAAGGTGCAGGTTGTCAACCATCAAATTTTATAGATGATATGAATGACGTGCGATGCCATTCTATTATCCAATTATTTTCATCTCATTGTGTATTATACTGAACAGTAAAGGAACATACAGGTAGTTGCAATGGTGCCTTTTCTCTCACCTCATTGAAAGTGGGTGTGGAGGGTATTCTAACACCCGGCCTTAATCTTGTATTCATTACTCATATATGCCTTCACATTTAATTATATTCTTTTCTCAACTTTCTTTAGTCATCTTCTCCTGCTTACAAACTCTTCCAGCAGATTCTAGGATCAACATTGCGGACAGATGAGGTTTCTGTATGAAGCTCATAAAGCTTCGTTTAGCAAGGAAACATCTTATATGGATTGCAAGTTCAACATGCTTTGACTTTGAAAGCTCGTATGTTAGAAGCTTGCACCGACTACAAACAAAACTGCCATCCCATGTCAGCAGAATGAAGCAACAGAAAACAAACGGACAGCAGAGCCTCTCTTGTTCTACAGTACCAACGGAATCGTCCTTAAGGTTGACAAAATGGATATTATACAATGG

Coding sequence (CDS)

ATGGTTTCATTAGCATCTTCTTCACTCTTACTTCTCTCAAAACCTTCGTTAATCTTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCACTTTCATCCAATTCCAAACCCAACGCCTCCTCTTCATCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCCCCGAAACCCAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAAATTCCGGCGGTCAGCTCTTCATTCCGTGGATAGTTCGCGGCGAAGATGGGAACCTCAAGCTCCAGTCTCATCCTCCTACACGGTTCCTTCATTCCGTGTCGGAGGATGAAACCAAGCCCAAGAAGAAGAAGGTTTCTGCTGGTAAACCCATAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGGTTTTATAATGAGAACATTAGGGAGTCGTCGCAGCGTCTGAGTAAAGTTCTTGCTGCCGCTGGAGTGGCATCAAGACGGAGTAGTGAAGAGCTTATATTTGGAGGCCGCGTTACTGTTAATGGTTCTGTTTGCAATACTCCTCAGACTCGGGTTGATCCTGCAAGAGACATTATTTACGTGAATGGTAATAGGCTTCCTAAGAAACTGCCTCCAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTATATTTGTTCATCTGGGAAAAAAGAGTCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGATAAAACATATCCAGGGCAACCCAAACCACGGCTCTTTACAGTTGGCAGACTTGATGTTGCAACGACTGGGTTGATTATAGTGACAAATGATGGAGATTTTGCTCAAGGTATCTCACATCCTTCATCTGGTTTATCGAAGGAATACATTGCAGCAATAGATGGCACTGTTAGTAAGCAGAACCTGATAGCAATTAGTGAGGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCCGTGGAGTTGCTACCACGGCAGCCAGATATATCAAAGTCTCGTCTGCGTATCGTGGTACATGAAGGAAGGAACCATGAAGTTAGGGAACTCATAAAAGCTGCTGGTTTAGAGATCTATTCATTAAAGCGTGTAAGGATCGGAGGCTTCAGACTTCCATCAGATTTGGGGCTTGGAAGTTACACTGAACTAAAGCAAAGTGAACTGAAGGCAATTGGTTGGAAAAGTTGA

Protein sequence

MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPKPKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVSAGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELIKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS*
Homology
[Close]
BLAST of CSPI06G21600 vs. ExPASy Swiss-Prot
Match: Q8L960 (Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SVR1 PE=1 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 1.6e-142
Identity = 275/423 (65.01%), Postives = 318/423 (75.18%), Query Frame = 0 

Query: 2   VSLASSSLLLLSKP-SLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 61
           +S A+S L + + P S  F PIR    + CS+        SSSSS  +EF+I+FAPPKPK
Sbjct: 10  ISFAASFLKIKAFPLSPRFFPIRT---LRCSV--------SSSSSEPIEFDISFAPPKPK 69

Query: 62  PKSEVEDPFQFIDRNSGG----QLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDET--KP 121
           P S             GG    QLFIPWIVR +DG LKLQS PP R +H+++ D T   P
Sbjct: 70  PSS-----------THGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNP 129

Query: 122 KKKKVS----------------AGKPITE---PPKHSKAARRFYNENIRESSQRLSKVLA 181
           KKK  S                A  P +     PK SKAARRFYNEN +E  QRLSKVLA
Sbjct: 130 KKKDKSKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLA 189

Query: 182 AAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALN 241
           AAGVASRR+SEELIF G+VTVNG +CNTPQTRVDP+RDIIYVNGNR+PKKLPPKVY ALN
Sbjct: 190 AAGVASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALN 249

Query: 242 KPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDG 301
           KPKGYICSSG+KE KS ISLFD+YL SWDK  PG PKPRLFTVGRLDVATTGLI+VTNDG
Sbjct: 250 KPKGYICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDG 309

Query: 302 DFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISK 361
           DFAQ +SHPSS L KEYI  + G + K++L+AISEGT+++GVHC PDSVEL+P+Q DI +
Sbjct: 310 DFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPR 369

Query: 362 SRLRIVVHEGRNHEVRELIKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIG 399
           +RLRIVVHEGRNHEVREL+K AGLE++SLKRVRIGGFRLPSDLGLG + ELKQSELKA+G
Sbjct: 370 ARLRIVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALG 410

[Close]
BLAST of CSPI06G21600 vs. ExPASy Swiss-Prot
Match: O67444 (Uncharacterized RNA pseudouridine synthase aq_1464 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_1464 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.2e-34
Identity = 95/255 (37.25%), Postives = 138/255 (54.12%), Query Frame = 0 

Query: 149 RLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPP 208
           R++K L+ AGVASRR +E+LI  GRV VNG V  +   +V+P  DI+ V+G   P K   
Sbjct: 5   RINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGK--PVKPQR 64

Query: 209 KVYLALNKPKGYICSSGKKES--KSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATT 268
           K Y+ LNKP  Y+   G+     K++  L  D               R+F VGRLD  T 
Sbjct: 65  KRYIILNKPCCYLTQLGRSPDGRKTIEELIKDI------------PERVFPVGRLDYNTE 124

Query: 269 GLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVEL 328
           GL+I+TNDG+ A  I HP   L K Y+A ++G V ++ L  + +G  ++     PD++ +
Sbjct: 125 GLLILTNDGELANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDGFAKPDNIRI 184

Query: 329 LPRQPDISKSRLRIVVHEGRNHEVRELIKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTEL 388
           +  + +   + L I  HEGR H V+  + A G ++  LKR+ IG  +L   L  G + EL
Sbjct: 185 V--RYEGKNTLLEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKL-GKLSPGKWREL 242

Query: 389 KQSEL----KAIGWK 398
            Q EL    KA+G K
Sbjct: 245 NQGELAQLFKAVGLK 242

[Close]
BLAST of CSPI06G21600 vs. ExPASy Swiss-Prot
Match: P35159 (Ribosomal large subunit pseudouridine synthase B OS=Bacillus subtilis (strain 168) OX=224308 GN=rluB PE=1 SV=2)

HSP 1 Score: 137.5 bits (345), Expect = 3.3e-31
Identity = 86/247 (34.82%), Postives = 132/247 (53.44%), Query Frame = 0 

Query: 148 QRLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLP 207
           +RL KV+A AGVASRR +EELI  G+V VNG V      +V    D I VNG ++ ++ P
Sbjct: 2   ERLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTELGVKV-TGSDQIEVNGLKVEREEP 61

Query: 208 PKVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTG 267
             VY  L KP+G I ++   + + V++   D+ K+  +        R++ +GRLD  T+G
Sbjct: 62  --VYFLLYKPRGVISAAQDDKGRKVVT---DFFKNIPQ--------RIYPIGRLDYDTSG 121

Query: 268 LIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELL 327
           L+++TNDG+FA  + HP   + K Y+A + G   K+ L  +  G  ++     P   +LL
Sbjct: 122 LLLLTNDGEFANKLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLL 181

Query: 328 PRQPDISKSRLRIVVHEGRNHEVRELIKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELK 387
                   S +++ +HEGRN +VR + +A G E+  LKR       L   L  G   EL 
Sbjct: 182 SLDKKKQTSIIQLTIHEGRNRQVRRMFEAIGHEVIKLKREEYAFLNL-RGLHTGDARELT 233

Query: 388 QSELKAI 395
             E+K +
Sbjct: 242 PHEVKRL 233

[Close]
BLAST of CSPI06G21600 vs. ExPASy Swiss-Prot
Match: O05668 (Uncharacterized RNA pseudouridine synthase ML1370 OS=Mycobacterium leprae (strain TN) OX=272631 GN=ML1370 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-29
Identity = 89/247 (36.03%), Postives = 130/247 (52.63%), Query Frame = 0 

Query: 149 RLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPP 208
           RL K+L+ AG+ASRR++E+LI  GRV V+G +     TRVDP   ++ V+G ++      
Sbjct: 17  RLQKILSRAGIASRRAAEKLIIEGRVEVDGQLVRELGTRVDPDVSVVRVDGVKVVVD-DS 76

Query: 209 KVYLALNKPKG-YICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTG 268
            VYLALNKP+G Y   S  +    V  L +  ++            +LF VGRLD  T G
Sbjct: 77  LVYLALNKPRGMYSTMSDDRGRPCVGDLIERRVRG---------NKKLFHVGRLDADTEG 136

Query: 269 LIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELL 328
           LI++TNDG+ A  + HPS  +SK Y+A + G V +     +S G  +D      D   ++
Sbjct: 137 LILLTNDGELAHRLMHPSHEVSKTYLATVKGAVPRGLGKKLSVGLELDDGPAHVDDFAVV 196

Query: 329 PRQPDISKSRLRIVVHEGRNHEVRELIKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELK 388
              P   K+ +R+ +HEGR   VR L+ AAG  +  L R  IG   L  D   G    L 
Sbjct: 197 DAIP--GKTLVRLTLHEGRKRIVRRLLTAAGFPVEMLVRTDIGAVSL-GDQRPGCLRALL 250

Query: 389 QSELKAI 395
           + E++ +
Sbjct: 257 RDEIRQL 250

[Close]
BLAST of CSPI06G21600 vs. ExPASy Swiss-Prot
Match: P9WHQ0 (Uncharacterized RNA pseudouridine synthase MT1751.1 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT1751.1 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-29
Identity = 89/243 (36.63%), Postives = 130/243 (53.50%), Query Frame = 0 

Query: 149 RLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPP 208
           RL KVL+ AG+ASRR++E++I  GRV V+G V     TRVDP   ++ V+G R+      
Sbjct: 15  RLQKVLSQAGIASRRAAEKMIVDGRVEVDGHVVTELGTRVDPQVAVVRVDGARVVLD-DS 74

Query: 209 KVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGL 268
            VYLALNKP+G   +      +  I    D +   ++   G  K  LF VGRLD  T GL
Sbjct: 75  LVYLALNKPRGMHSTMSDDRGRPCIG---DLI---ERKVRGTKK--LFHVGRLDADTEGL 134

Query: 269 IIVTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLP 328
           +++TNDG+ A  + HPS  + K Y+A + G+V +     +  G  +D      D   ++ 
Sbjct: 135 MLLTNDGELAHRLMHPSHEVPKTYLATVTGSVPRGLGRTLRAGIELDDGPAFVDDFAVVD 194

Query: 329 RQPDISKSRLRIVVHEGRNHEVRELIKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQ 388
             P   K+ +R+ +HEGRN  VR L+ AAG  + +L R  IG   L      GS   L+ 
Sbjct: 195 AIP--GKTLVRVTLHEGRNRIVRRLLAAAGFPVEALVRTDIGAVSLGKQRP-GSVRALRS 245

Query: 389 SEL 392
           +E+
Sbjct: 255 NEI 245

[Close]
BLAST of CSPI06G21600 vs. ExPASy TrEMBL
Match: A0A1S3C3I9 (uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496448 PE=3 SV=1)

HSP 1 Score: 746.1 bits (1925), Expect = 7.5e-212
Identity = 380/398 (95.48%), Postives = 387/398 (97.24%), Query Frame = 0 

Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSSL  LSKPSLIFN IRAIPRISCSLSSNS PNA  SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNA--SSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRN+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELIKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDIS+ RLRIVVHEGRNHEVREL+KAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 399
           IYSLKRVRIGG+RLPSDLGLGSYTELKQS+LKAIGWKS
Sbjct: 361 IYSLKRVRIGGYRLPSDLGLGSYTELKQSDLKAIGWKS 396

[Close]
BLAST of CSPI06G21600 vs. ExPASy TrEMBL
Match: A0A1S4E166 (ribosomal large subunit pseudouridine synthase B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496448 PE=3 SV=1)

HSP 1 Score: 708.4 bits (1827), Expect = 1.7e-200
Identity = 362/379 (95.51%), Postives = 368/379 (97.10%), Query Frame = 0 

Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSSL  LSKPSLIFN IRAIPRISCSLSSNS PNA  SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNA--SSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRN+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELIKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDIS+ RLRIVVHEGRNHEVREL+KAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLG 380
           IYSLKRVRIGG+RLPSDLG
Sbjct: 361 IYSLKRVRIGGYRLPSDLG 377

[Close]
BLAST of CSPI06G21600 vs. ExPASy TrEMBL
Match: A0A6J1BVE6 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006060 PE=3 SV=1)

HSP 1 Score: 704.5 bits (1817), Expect = 2.5e-199
Identity = 362/401 (90.27%), Postives = 378/401 (94.26%), Query Frame = 0 

Query: 1   MVSLAS--SSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPK 60
           M SLA+  SSL +LSKPS I NPIRAIPRISCSLSSNS PNA  SSSS LEFNITFAPPK
Sbjct: 1   MASLAAALSSLSILSKPSFILNPIRAIPRISCSLSSNSAPNA--SSSSPLEFNITFAPPK 60

Query: 61  PKPKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKK 120
           PKPKSE++ PFQFID N+GGQL IPWIVRGEDGNL+LQSHPPTRFL S+SE ETKP++KK
Sbjct: 61  PKPKSEIQHPFQFIDPNTGGQLLIPWIVRGEDGNLQLQSHPPTRFLQSMSEAETKPRRKK 120

Query: 121 VSAGKPITE-PPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVN 180
            SA K + E PPKHSKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVN
Sbjct: 121 GSADKRVPEPPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN 180

Query: 181 GSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240
           GSVCNTPQTRVDPARD+IYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD
Sbjct: 181 GSVCNTPQTRVDPARDVIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240

Query: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAID 300
           DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAID
Sbjct: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID 300

Query: 301 GTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELIKAA 360
           G VSKQNLIAISEGTIIDGVHCTPDSVELLPRQPD+S+SRLRIVVHEGRNHEVREL+KAA
Sbjct: 301 GAVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDVSRSRLRIVVHEGRNHEVRELVKAA 360

Query: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 399
           GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQS+LKAIGWKS
Sbjct: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399

[Close]
BLAST of CSPI06G21600 vs. ExPASy TrEMBL
Match: A0A6J1GVH4 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457913 PE=3 SV=1)

HSP 1 Score: 703.7 bits (1815), Expect = 4.3e-199
Identity = 356/398 (89.45%), Postives = 374/398 (93.97%), Query Frame = 0 

Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA+SSL +LSKPSLI NPIRAI RISCSLSSNS PN SSSSSSSLEFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSLEFNITFAPPTPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKS+ +D FQFID+N+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
             K + EPPK+SKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSW KTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSG+SKEYIAAIDG V
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELIKAAGLE 360
           SKQNLI ISEGT+IDGVHC PD+VELLP+QPDI +SRLRI VHEGRNHEVREL+KAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 399
           IYSLKRVRIGGFRLPSDLGLGSY ELKQS+LKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYIELKQSDLKAIGWKS 398

[Close]
BLAST of CSPI06G21600 vs. ExPASy TrEMBL
Match: A0A6J1JT41 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487252 PE=3 SV=1)

HSP 1 Score: 701.0 bits (1808), Expect = 2.8e-198
Identity = 354/398 (88.94%), Postives = 373/398 (93.72%), Query Frame = 0 

Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA+SSL +LSKPSLI NPIRAI RISCSLSSNS PN SSSSSSS+EFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSMEFNITFAPPTPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKS+ +D FQFID+N+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
             K + EPPK+SKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSW KTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSG+SKEYIAAIDG V
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELIKAAGLE 360
           SKQNLI ISEGT+IDGVHC PD+VELLP+QPDI +SRLRI VHEGRNHEVREL+KAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 399
           IYSLKRVRIGGFRLPSDLGLGSY ELKQ +LKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYIELKQCDLKAIGWKS 398

[Close]
BLAST of CSPI06G21600 vs. NCBI nr
Match: XP_004140075.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cucumis sativus] >KGN48104.2 hypothetical protein Csa_003766 [Cucumis sativus])

HSP 1 Score: 780.0 bits (2013), Expect = 9.7e-222
Identity = 397/398 (99.75%), Postives = 398/398 (100.00%), Query Frame = 0 

Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK
Sbjct: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS
Sbjct: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELIKAAGLE 360
           SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVREL+KAAGLE
Sbjct: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 399
           IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398

[Close]
BLAST of CSPI06G21600 vs. NCBI nr
Match: XP_008456519.1 (PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 [Cucumis melo])

HSP 1 Score: 746.1 bits (1925), Expect = 1.5e-211
Identity = 380/398 (95.48%), Postives = 387/398 (97.24%), Query Frame = 0 

Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSSL  LSKPSLIFN IRAIPRISCSLSSNS PNA  SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNA--SSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRN+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELIKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDIS+ RLRIVVHEGRNHEVREL+KAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 399
           IYSLKRVRIGG+RLPSDLGLGSYTELKQS+LKAIGWKS
Sbjct: 361 IYSLKRVRIGGYRLPSDLGLGSYTELKQSDLKAIGWKS 396

[Close]
BLAST of CSPI06G21600 vs. NCBI nr
Match: XP_038884576.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Benincasa hispida])

HSP 1 Score: 737.6 bits (1903), Expect = 5.5e-209
Identity = 374/398 (93.97%), Postives = 384/398 (96.48%), Query Frame = 0 

Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSSL  LSKPS I NPIRAIPRISCSLSSNS PNASSSSSSSLEFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSFILNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKSEVE PFQFIDRN+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSEVEGPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           A K  TEPPKHSKAARRFYNENIR++SQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 ADKRPTEPPKHSKAARRFYNENIRDASQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLI+VTNDGDFAQ ISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLILVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELIKAAGLE 360
           SKQNLIAISEGTIIDG+HCTPDSVELLPRQPDIS+ RLRIVVHEGRNHEVREL+KAAGLE
Sbjct: 301 SKQNLIAISEGTIIDGIHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 399
           IYSLKRVRIGGFRLPSDLGLGSYTELKQS+LKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 398

[Close]
BLAST of CSPI06G21600 vs. NCBI nr
Match: XP_016901969.1 (PREDICTED: ribosomal large subunit pseudouridine synthase B isoform X2 [Cucumis melo])

HSP 1 Score: 708.4 bits (1827), Expect = 3.6e-200
Identity = 362/379 (95.51%), Postives = 368/379 (97.10%), Query Frame = 0 

Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSSL  LSKPSLIFN IRAIPRISCSLSSNS PNA  SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNA--SSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRN+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELIKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDIS+ RLRIVVHEGRNHEVREL+KAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLG 380
           IYSLKRVRIGG+RLPSDLG
Sbjct: 361 IYSLKRVRIGGYRLPSDLG 377

[Close]
BLAST of CSPI06G21600 vs. NCBI nr
Match: XP_022133495.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Momordica charantia])

HSP 1 Score: 704.5 bits (1817), Expect = 5.2e-199
Identity = 362/401 (90.27%), Postives = 378/401 (94.26%), Query Frame = 0 

Query: 1   MVSLAS--SSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPK 60
           M SLA+  SSL +LSKPS I NPIRAIPRISCSLSSNS PNA  SSSS LEFNITFAPPK
Sbjct: 1   MASLAAALSSLSILSKPSFILNPIRAIPRISCSLSSNSAPNA--SSSSPLEFNITFAPPK 60

Query: 61  PKPKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKK 120
           PKPKSE++ PFQFID N+GGQL IPWIVRGEDGNL+LQSHPPTRFL S+SE ETKP++KK
Sbjct: 61  PKPKSEIQHPFQFIDPNTGGQLLIPWIVRGEDGNLQLQSHPPTRFLQSMSEAETKPRRKK 120

Query: 121 VSAGKPITE-PPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVN 180
            SA K + E PPKHSKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVN
Sbjct: 121 GSADKRVPEPPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN 180

Query: 181 GSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240
           GSVCNTPQTRVDPARD+IYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD
Sbjct: 181 GSVCNTPQTRVDPARDVIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240

Query: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAID 300
           DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAID
Sbjct: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID 300

Query: 301 GTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELIKAA 360
           G VSKQNLIAISEGTIIDGVHCTPDSVELLPRQPD+S+SRLRIVVHEGRNHEVREL+KAA
Sbjct: 301 GAVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDVSRSRLRIVVHEGRNHEVRELVKAA 360

Query: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 399
           GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQS+LKAIGWKS
Sbjct: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399

[Close]
BLAST of CSPI06G21600 vs. TAIR 10
Match: AT2G39140.1 (pseudouridine synthase family protein )

HSP 1 Score: 507.3 bits (1305), Expect = 1.1e-143
Identity = 275/423 (65.01%), Postives = 318/423 (75.18%), Query Frame = 0 

Query: 2   VSLASSSLLLLSKP-SLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 61
           +S A+S L + + P S  F PIR    + CS+        SSSSS  +EF+I+FAPPKPK
Sbjct: 10  ISFAASFLKIKAFPLSPRFFPIRT---LRCSV--------SSSSSEPIEFDISFAPPKPK 69

Query: 62  PKSEVEDPFQFIDRNSGG----QLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDET--KP 121
           P S             GG    QLFIPWIVR +DG LKLQS PP R +H+++ D T   P
Sbjct: 70  PSS-----------THGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNP 129

Query: 122 KKKKVS----------------AGKPITE---PPKHSKAARRFYNENIRESSQRLSKVLA 181
           KKK  S                A  P +     PK SKAARRFYNEN +E  QRLSKVLA
Sbjct: 130 KKKDKSKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLA 189

Query: 182 AAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALN 241
           AAGVASRR+SEELIF G+VTVNG +CNTPQTRVDP+RDIIYVNGNR+PKKLPPKVY ALN
Sbjct: 190 AAGVASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALN 249

Query: 242 KPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDG 301
           KPKGYICSSG+KE KS ISLFD+YL SWDK  PG PKPRLFTVGRLDVATTGLI+VTNDG
Sbjct: 250 KPKGYICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDG 309

Query: 302 DFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISK 361
           DFAQ +SHPSS L KEYI  + G + K++L+AISEGT+++GVHC PDSVEL+P+Q DI +
Sbjct: 310 DFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPR 369

Query: 362 SRLRIVVHEGRNHEVRELIKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIG 399
           +RLRIVVHEGRNHEVREL+K AGLE++SLKRVRIGGFRLPSDLGLG + ELKQSELKA+G
Sbjct: 370 ARLRIVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALG 410

[Close]
BLAST of CSPI06G21600 vs. TAIR 10
Match: AT3G43340.1 (Pseudouridine synthase family protein )

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-26
Identity = 54/74 (72.97%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 306 IAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELIKAAGLEIYSLK 365
           +AISEGT+++G+HC PD VEL+P+Q DI ++ LRIVVHEGRNHEVREL+K  GLE+ SLK
Sbjct: 1   MAISEGTMVEGIHCVPDLVELMPKQHDIPRAWLRIVVHEGRNHEVRELVKNVGLEVDSLK 60

Query: 366 RVRIGGFRLPSDLG 380
           RVRIGG RLPSDLG
Sbjct: 61  RVRIGGVRLPSDLG 74

The following BLAST results are available for this feature:
BLAST of CSPI06G21600 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L9601.6e-14265.01Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=A... [more]
O674443.2e-3437.25Uncharacterized RNA pseudouridine synthase aq_1464 OS=Aquifex aeolicus (strain V... [more]
P351593.3e-3134.82Ribosomal large subunit pseudouridine synthase B OS=Bacillus subtilis (strain 16... [more]
O056681.1e-2936.03Uncharacterized RNA pseudouridine synthase ML1370 OS=Mycobacterium leprae (strai... [more]
P9WHQ01.4e-2936.63Uncharacterized RNA pseudouridine synthase MT1751.1 OS=Mycobacterium tuberculosi... [more]
BLAST of CSPI06G21600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C3I97.5e-21295.48uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 OS=Cucumis melo OX... [more]
A0A1S4E1661.7e-20095.51ribosomal large subunit pseudouridine synthase B isoform X2 OS=Cucumis melo OX=3... [more]
A0A6J1BVE62.5e-19990.27putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=M... [more]
A0A6J1GVH44.3e-19989.45putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=C... [more]
A0A6J1JT412.8e-19888.94putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=C... [more]
BLAST of CSPI06G21600 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140075.19.7e-22299.75putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cuc... [more]
XP_008456519.11.5e-21195.48PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 [Cucumi... [more]
XP_038884576.15.5e-20993.97putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Ben... [more]
XP_016901969.13.6e-20095.51PREDICTED: ribosomal large subunit pseudouridine synthase B isoform X2 [Cucumis ... [more]
XP_022133495.15.2e-19990.27putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Mom... [more]
BLAST of CSPI06G21600 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39140.11.1e-14365.01pseudouridine synthase family protein [more]
AT3G43340.13.3e-2672.97Pseudouridine synthase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 148..207
e-value: 8.3E-14
score: 61.9
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 148..190
e-value: 3.7E-11
score: 42.5
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 148..215
e-value: 6.07469E-11
score: 55.3334
IPR006145Pseudouridine synthase, RsuA/RluA-likePFAMPF00849PseudoU_synth_2coord: 211..290
e-value: 3.1E-11
score: 43.6
IPR020094Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminalGENE3D3.30.70.580coord: 208..291
e-value: 1.7E-25
score: 90.5
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 144..204
e-value: 2.8E-18
score: 66.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..132
NoneNo IPR availablePANTHERPTHR47683PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATEDcoord: 40..291
NoneNo IPR availablePROSITEPS50889S4coord: 148..217
score: 14.281917
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 123..230
IPR018496Pseudouridine synthase, RsuA/RluB/E/F, conserved sitePROSITEPS01149PSI_RSUcoord: 259..273
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 209..290

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G21600.1CSPI06G21600.1mRNA
CSPI06G21600.2CSPI06G21600.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
biological_process GO:0000489 maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
biological_process GO:0032544 plastid translation
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
cellular_component GO:0009507 chloroplast
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0016866 intramolecular transferase activity