CSPI06G21200 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G21200
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	transcription factor PRE6-like
Location	Chr6: 19218619 .. 19219917 (-)
RNA-Seq Expression	CSPI06G21200
Synteny	CSPI06G21200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTATTTCTCTCTCTCTCTTCATATTTCTCTCTATATATACATCTCTATCCCATATCTCTCTCCCTTCATCCCCATAACGTCGTCCTTTAACCTTCTCTCTCCCTAAATACTTCTCTTTAGCTTCATCACACAACAATTTTATCATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCACGGCTGCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGTAATTTAAAACACCAGCATATACTTTAACTACCATAAAAGAATGAAAGTCATCCTTGGTCTGGTTTTTGTTTATGATCTTCTTCCTTTCTGTTTCCAAAATGGTTATTAAATTTTGTCTCCCCACATGTCGGGTTGTGGGTCTCACACTGTTCCCTCCTTCCACTGCCAATGCAGCTGGGGATACTCCAAATTCCCCCCTCCACACACCCCTCCTATTTCAATTTATTATTATTCTTCATATAATACCCTTTCATAGTACTATTCATTTTTCAATCACTCCCTTATATATATGTGTATATATATAGATTTCAAAATCTATCCACTTCTAATAATAATAAAAGAAAAAATTAAACTTACTAAGATAACAGTTTGAATTTTCTCTTTACTGTATATGCAAAAAGATGATGGATAAATCTCTCTCACGAGCTACATTGGGGCAGTCTCTCAAAATTACAATGATCCCTTTGTAAAAGATTTTTCCAGTTTTCATTTCTAGTGTAAAATCACATGAATGACTTAAAAAAAATACTTGTGTGCATCTTGGCCCTGCACTAGATTCCACTAAAACGAGAGAGAGAGAGAGTAATATTAAGTTGTGGTGCATCGATTGGTTTTAAAAAAGAAAATTAGCTTGGAAAGGAATAGTTCTCAGGTGTTGTAAAAAGTTTGTAATGATGTTTAAATTTGATGGGTGTAGGCGTCGGCTTCAAGAGTGCTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGCGAGAGATTGTCACAACTTTTGGCAGCAACCGAAAACGACAGCGCCGAGGCTACCATTATTAGGAGTTTATTTATGTAAAAAACCATTTAAATAACCACAATTTCCCTACCCCATAATTAATAATTACGACGTCCTTAATTTCTTATTTCTCATTTTCCTCTATATATATTATATATGATATTTAAATTATATTGTTTAGCTAGGGCTCCTTTTGGCCAATGTATTAGACCACTACACAGAAG

mRNA sequence

CATTATTTCTCTCTCTCTCTTCATATTTCTCTCTATATATACATCTCTATCCCATATCTCTCTCCCTTCATCCCCATAACGTCGTCCTTTAACCTTCTCTCTCCCTAAATACTTCTCTTTAGCTTCATCACACAACAATTTTATCATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCACGGCTGCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGCGTCGGCTTCAAGAGTGCTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGCGAGAGATTGTCACAACTTTTGGCAGCAACCGAAAACGACAGCGCCGAGGCTACCATTATTAGGAGTTTATTTATGTAAAAAACCATTTAAATAACCACAATTTCCCTACCCCATAATTAATAATTACGACGTCCTTAATTTCTTATTTCTCATTTTCCTCTATATATATTATATATGATATTTAAATTATATTGTTTAGCTAGGGCTCCTTTTGGCCAATGTATTAGACCACTACACAGAAG

Coding sequence (CDS)

ATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCACGGCTGCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGCGTCGGCTTCAAGAGTGCTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGCGAGAGATTGTCACAACTTTTGGCAGCAACCGAAAACGACAGCGCCGAGGCTACCATTATTAGGAGTTTATTTATGTAA

Protein sequence

MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM*

Homology

[Close]

BLAST of CSPI06G21200 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.0e-28
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSR S   S  ISDDQI+DLVSKLQ LIPELR  R S K SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRQS--GSSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSL 95
          RNLHREVDDLS+RLS+LLA+T+++SAEA IIRSL
Sbjct: 61 RNLHREVDDLSDRLSELLASTDDNSAEAAIIRSL 91

[Close]

BLAST of CSPI06G21200 vs. ExPASy Swiss-Prot
Match: Q9FLE9 (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-23
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MS+RRS +S    +++P ISD+Q+ DLVSKL++++PE+   R S KASAS+VLQETCNYI
Sbjct: 1  MSNRRSRQS----SSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNL+REVD+LSERLSQLL + + DS EA +IRSL M
Sbjct: 61 RNLNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CSPI06G21200 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.8e-23
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MS RR SRSR S+  S  IS+DQI DL+ KLQ+L+PELR+ R S K SA+RVLQ+TCNYI
Sbjct: 1  MSGRR-SRSRQSSGTS-RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSL 95
          RNLHREVDDLSERLS+LLA   +D+A+A +IRSL
Sbjct: 61 RNLHREVDDLSERLSELLA--NSDTAQAALIRSL 90

[Close]

BLAST of CSPI06G21200 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-22
Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MS+RRS ++ N++     ISDDQ+ DLVSKL++ +PE+   R S K SAS+VLQETCNYI
Sbjct: 1  MSNRRSRQTSNASR----ISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          R LHREVD+LS+RLSQLL + + DS EA +IRSL M
Sbjct: 61 RKLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CSPI06G21200 vs. ExPASy Swiss-Prot
Match: F4JCN9 (Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.8e-22
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 3  SRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRN 62
          S R SRSR + A+  +I+D+QI DLV +L RL+PEL N R S K SASRVLQETC+YIRN
Sbjct: 2  SSRKSRSRQTGAS--MITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRN 61

Query: 63 LHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          L +EVDDLSERLSQLL +T  DSA+A +IRSL M
Sbjct: 62 LSKEVDDLSERLSQLLEST--DSAQAALIRSLLM 91

[Close]

BLAST of CSPI06G21200 vs. ExPASy TrEMBL
Match: A0A0A0KDL6 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G404200 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.6e-41
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI
Sbjct: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 96

[Close]

BLAST of CSPI06G21200 vs. ExPASy TrEMBL
Match: A0A5D3BPI2 (Transcription factor PRE6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00850 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.1e-39
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNS+A+SPLISDDQIADLVSKLQRLIPELRNPRASHK SASRVLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 96

[Close]

BLAST of CSPI06G21200 vs. ExPASy TrEMBL
Match: A0A1S3CPL2 (transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103503223 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.1e-39
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNS+A+SPLISDDQIADLVSKLQRLIPELRNPRASHK SASRVLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 96

[Close]

BLAST of CSPI06G21200 vs. ExPASy TrEMBL
Match: A0A6J1KGK3 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111494030 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.2e-32
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNS+ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93

[Close]

BLAST of CSPI06G21200 vs. ExPASy TrEMBL
Match: A0A6J1G4C0 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450613 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.2e-32
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNS+ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93

[Close]

BLAST of CSPI06G21200 vs. NCBI nr
Match: XP_004146747.1 (transcription factor PRE6 [Cucumis sativus] >KGN47805.1 hypothetical protein Csa_003742 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 5.3e-41
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI
Sbjct: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 96

[Close]

BLAST of CSPI06G21200 vs. NCBI nr
Match: XP_008465587.1 (PREDICTED: transcription factor PRE6-like [Cucumis melo] >KAA0036447.1 transcription factor PRE6-like [Cucumis melo var. makuwa] >TYK00039.1 transcription factor PRE6-like [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 8.5e-39
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNS+A+SPLISDDQIADLVSKLQRLIPELRNPRASHK SASRVLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 96

[Close]

BLAST of CSPI06G21200 vs. NCBI nr
Match: XP_038886241.1 (transcription factor PRE6-like [Benincasa hispida])

HSP 1 Score: 161.8 bits (408), Expect = 3.0e-36
Identity = 88/96 (91.67%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNS+ A PLISDDQI+DLVSKLQRLIPELRNPRASHK SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSGA-PLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLA+TENDSAEA IIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM 95

[Close]

BLAST of CSPI06G21200 vs. NCBI nr
Match: XP_022946595.1 (transcription factor PRE6-like [Cucurbita moschata] >XP_022999784.1 transcription factor PRE6-like [Cucurbita maxima] >XP_022999785.1 transcription factor PRE6-like [Cucurbita maxima] >KAG6599062.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030000.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 4.5e-32
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNS+ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93

[Close]

BLAST of CSPI06G21200 vs. NCBI nr
Match: XP_023546056.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-31
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRN++ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNTSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93

[Close]

BLAST of CSPI06G21200 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 5.0e-29
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSR S   S  ISDDQI+DLVSKLQ LIPELR  R S K SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRQS--GSSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSL 95
          RNLHREVDDLS+RLS+LLA+T+++SAEA IIRSL
Sbjct: 61 RNLHREVDDLSDRLSELLASTDDNSAEAAIIRSL 91

[Close]

BLAST of CSPI06G21200 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-24
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MS+RRS +S    +++P ISD+Q+ DLVSKL++++PE+   R S KASAS+VLQETCNYI
Sbjct: 1  MSNRRSRQS----SSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNL+REVD+LSERLSQLL + + DS EA +IRSL M
Sbjct: 61 RNLNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CSPI06G21200 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 107.8 bits (268), Expect = 4.8e-24
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MS RR SRSR S+  S  IS+DQI DL+ KLQ+L+PELR+ R S K SA+RVLQ+TCNYI
Sbjct: 1  MSGRR-SRSRQSSGTS-RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSL 95
          RNLHREVDDLSERLS+LLA   +D+A+A +IRSL
Sbjct: 61 RNLHREVDDLSERLSELLA--NSDTAQAALIRSL 90

[Close]

BLAST of CSPI06G21200 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-23
Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MS+RRS ++ N++     ISDDQ+ DLVSKL++ +PE+   R S K SAS+VLQETCNYI
Sbjct: 1  MSNRRSRQTSNASR----ISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          R LHREVD+LS+RLSQLL + + DS EA +IRSL M
Sbjct: 61 RKLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CSPI06G21200 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 104.0 bits (258), Expect = 7.0e-23
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 3  SRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRN 62
          S R SRSR + A+  +I+D+QI DLV +L RL+PEL N R S K SASRVLQETC+YIRN
Sbjct: 2  SSRKSRSRQTGAS--MITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRN 61

Query: 63 LHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          L +EVDDLSERLSQLL +T  DSA+A +IRSL M
Sbjct: 62 LSKEVDDLSERLSQLLEST--DSAQAALIRSLLM 91

The following BLAST results are available for this feature:

BLAST of CSPI06G21200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	7.0e-28	77.66	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9FLE9	2.3e-23	62.50	Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1	[more]
Q9CA64	6.8e-23	68.09	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
Q9LJX1	2.0e-22	60.42	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
F4JCN9	9.8e-22	65.96	Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1	[more]

BLAST of CSPI06G21200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDL6	2.6e-41	100.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G404200 PE=4 S...	[more]
A0A5D3BPI2	4.1e-39	94.79	Transcription factor PRE6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CPL2	4.1e-39	94.79	transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103503223 PE=4 SV=1	[more]
A0A6J1KGK3	2.2e-32	87.50	transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111494030 PE=4 ...	[more]
A0A6J1G4C0	2.2e-32	87.50	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450613 PE=...	[more]

BLAST of CSPI06G21200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146747.1	5.3e-41	100.00	transcription factor PRE6 [Cucumis sativus] >KGN47805.1 hypothetical protein Csa...	[more]
XP_008465587.1	8.5e-39	94.79	PREDICTED: transcription factor PRE6-like [Cucumis melo] >KAA0036447.1 transcrip...	[more]
XP_038886241.1	3.0e-36	91.67	transcription factor PRE6-like [Benincasa hispida]	[more]
XP_022946595.1	4.5e-32	87.50	transcription factor PRE6-like [Cucurbita moschata] >XP_022999784.1 transcriptio...	[more]
XP_023546056.1	1.0e-31	86.46	transcription factor PRE6-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI06G21200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	5.0e-29	77.66	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G39860.1	1.7e-24	62.50	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT1G74500.1	4.8e-24	68.09	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT3G28857.1	1.4e-23	60.42	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT3G47710.1	7.0e-23	65.96	BANQUO 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..80
None	No IPR available	PANTHER	PTHR46446:SF9	TRANSCRIPTION FACTOR PRE6-LIKE	coord: 1..96
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 14..79 e-value: 4.59718E-20 score: 74.2619
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 21..92 e-value: 4.7E-9 score: 38.3
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 22..80
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 22..64 e-value: 7.7E-5 score: 22.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 8..63 score: 9.432281
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G21200.1	CSPI06G21200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity