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CSPI06G21200 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATTATTTCTCTCTCTCTCTTCATATTTCTCTCTATATATACATCTCTATCCCATATCTCTCTCCCTTCATCCCCATAACGTCGTCCTTTAACCTTCTCTCTCCCTAAATACTTCTCTTTAGCTTCATCACACAACAATTTTATCATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCACGGCTGCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGTAATTTAAAACACCAGCATATACTTTAACTACCATAAAAGAATGAAAGTCATCCTTGGTCTGGTTTTTGTTTATGATCTTCTTCCTTTCTGTTTCCAAAATGGTTATTAAATTTTGTCTCCCCACATGTCGGGTTGTGGGTCTCACACTGTTCCCTCCTTCCACTGCCAATGCAGCTGGGGATACTCCAAATTCCCCCCTCCACACACCCCTCCTATTTCAATTTATTATTATTCTTCATATAATACCCTTTCATAGTACTATTCATTTTTCAATCACTCCCTTATATATATGTGTATATATATAGATTTCAAAATCTATCCACTTCTAATAATAATAAAAGAAAAAATTAAACTTACTAAGATAACAGTTTGAATTTTCTCTTTACTGTATATGCAAAAAGATGATGGATAAATCTCTCTCACGAGCTACATTGGGGCAGTCTCTCAAAATTACAATGATCCCTTTGTAAAAGATTTTTCCAGTTTTCATTTCTAGTGTAAAATCACATGAATGACTTAAAAAAAATACTTGTGTGCATCTTGGCCCTGCACTAGATTCCACTAAAACGAGAGAGAGAGAGAGTAATATTAAGTTGTGGTGCATCGATTGGTTTTAAAAAAGAAAATTAGCTTGGAAAGGAATAGTTCTCAGGTGTTGTAAAAAGTTTGTAATGATGTTTAAATTTGATGGGTGTAGGCGTCGGCTTCAAGAGTGCTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGCGAGAGATTGTCACAACTTTTGGCAGCAACCGAAAACGACAGCGCCGAGGCTACCATTATTAGGAGTTTATTTATGTAAAAAACCATTTAAATAACCACAATTTCCCTACCCCATAATTAATAATTACGACGTCCTTAATTTCTTATTTCTCATTTTCCTCTATATATATTATATATGATATTTAAATTATATTGTTTAGCTAGGGCTCCTTTTGGCCAATGTATTAGACCACTACACAGAAG CATTATTTCTCTCTCTCTCTTCATATTTCTCTCTATATATACATCTCTATCCCATATCTCTCTCCCTTCATCCCCATAACGTCGTCCTTTAACCTTCTCTCTCCCTAAATACTTCTCTTTAGCTTCATCACACAACAATTTTATCATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCACGGCTGCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGCGTCGGCTTCAAGAGTGCTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGCGAGAGATTGTCACAACTTTTGGCAGCAACCGAAAACGACAGCGCCGAGGCTACCATTATTAGGAGTTTATTTATGTAAAAAACCATTTAAATAACCACAATTTCCCTACCCCATAATTAATAATTACGACGTCCTTAATTTCTTATTTCTCATTTTCCTCTATATATATTATATATGATATTTAAATTATATTGTTTAGCTAGGGCTCCTTTTGGCCAATGTATTAGACCACTACACAGAAG ATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCACGGCTGCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGCGTCGGCTTCAAGAGTGCTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGCGAGAGATTGTCACAACTTTTGGCAGCAACCGAAAACGACAGCGCCGAGGCTACCATTATTAGGAGTTTATTTATGTAA MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM* Homology
BLAST of CSPI06G21200 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 7.0e-28 Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 0
BLAST of CSPI06G21200 vs. ExPASy Swiss-Prot
Match: Q9FLE9 (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 2.3e-23 Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 0
BLAST of CSPI06G21200 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 6.8e-23 Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 0
BLAST of CSPI06G21200 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 2.0e-22 Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = 0
BLAST of CSPI06G21200 vs. ExPASy Swiss-Prot
Match: F4JCN9 (Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 9.8e-22 Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0
BLAST of CSPI06G21200 vs. ExPASy TrEMBL
Match: A0A0A0KDL6 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G404200 PE=4 SV=1) HSP 1 Score: 177.6 bits (449), Expect = 2.6e-41 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
BLAST of CSPI06G21200 vs. ExPASy TrEMBL
Match: A0A5D3BPI2 (Transcription factor PRE6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00850 PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 4.1e-39 Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0
BLAST of CSPI06G21200 vs. ExPASy TrEMBL
Match: A0A1S3CPL2 (transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103503223 PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 4.1e-39 Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0
BLAST of CSPI06G21200 vs. ExPASy TrEMBL
Match: A0A6J1KGK3 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111494030 PE=4 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 2.2e-32 Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0
BLAST of CSPI06G21200 vs. ExPASy TrEMBL
Match: A0A6J1G4C0 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450613 PE=4 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 2.2e-32 Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0
BLAST of CSPI06G21200 vs. NCBI nr
Match: XP_004146747.1 (transcription factor PRE6 [Cucumis sativus] >KGN47805.1 hypothetical protein Csa_003742 [Cucumis sativus]) HSP 1 Score: 177.6 bits (449), Expect = 5.3e-41 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
BLAST of CSPI06G21200 vs. NCBI nr
Match: XP_008465587.1 (PREDICTED: transcription factor PRE6-like [Cucumis melo] >KAA0036447.1 transcription factor PRE6-like [Cucumis melo var. makuwa] >TYK00039.1 transcription factor PRE6-like [Cucumis melo var. makuwa]) HSP 1 Score: 170.2 bits (430), Expect = 8.5e-39 Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0
BLAST of CSPI06G21200 vs. NCBI nr
Match: XP_038886241.1 (transcription factor PRE6-like [Benincasa hispida]) HSP 1 Score: 161.8 bits (408), Expect = 3.0e-36 Identity = 88/96 (91.67%), Postives = 92/96 (95.83%), Query Frame = 0
BLAST of CSPI06G21200 vs. NCBI nr
Match: XP_022946595.1 (transcription factor PRE6-like [Cucurbita moschata] >XP_022999784.1 transcription factor PRE6-like [Cucurbita maxima] >XP_022999785.1 transcription factor PRE6-like [Cucurbita maxima] >KAG6599062.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030000.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 147.9 bits (372), Expect = 4.5e-32 Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0
BLAST of CSPI06G21200 vs. NCBI nr
Match: XP_023546056.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 146.7 bits (369), Expect = 1.0e-31 Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0
BLAST of CSPI06G21200 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 124.4 bits (311), Expect = 5.0e-29 Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 0
BLAST of CSPI06G21200 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein ) HSP 1 Score: 109.4 bits (272), Expect = 1.7e-24 Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 0
BLAST of CSPI06G21200 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 ) HSP 1 Score: 107.8 bits (268), Expect = 4.8e-24 Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 0
BLAST of CSPI06G21200 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein ) HSP 1 Score: 106.3 bits (264), Expect = 1.4e-23 Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = 0
BLAST of CSPI06G21200 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 ) HSP 1 Score: 104.0 bits (258), Expect = 7.0e-23 Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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