CSPI06G20550 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G20550
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionsmall RNA degrading nuclease 5
LocationChr6: 18647019 .. 18650608 (-)
RNA-Seq ExpressionCSPI06G20550
SyntenyCSPI06G20550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTTGTGAAACAAGTCTAATGCCCAGAGAAGTAATTGATGCCGTTTATGAGTAGGGACCACCGGGTGTATTCCAATCCTATCGAAAACCCATCCATGGGTGGTGGGTATTTGATAAAAACAAAGTTTTTTTTTTCTCTTGCAGTTAATCAAGTTTAAAGCTGAAAGTGCTCTTAGAATTTGGTTTTGGGAGGACATGACATCTAGATTAGGCATCCTCCCGCGGTTTCTATGAAAAAGACCAATCTCAAGCTTGCCACTTTAGGATGAAAAGTGGGGCCTTTTGGTGGTAGATTGATGAATGAATCGTTTTTCTTTGTGTGATTGATCCTGTTTGGTCGGAAGAGGGCTACAACAGGTTTAGATGGGGTATGGGGAATTAGTTACCAAGTCTACTTTTTTTTCATTTCTTGATATTGAATAACAGGCTTGCGATCTCCTTGGTGAAAGAAATCTGGAAGTTCAAGGTTCTCAAAAAAGTGAAAATTTTTCCTCCTGATGATATTGTATTGATGTATAAACACAACAGAGAAGCTCCAAGGGATGTTCCCTTCTTGGTACCTTTACCCATAGGTTTGCAGAATGTATATGAATAATGATCAATCATTAGACCTAAGAAGCACAGACCCACGGATACGATAGGACACCGGGATATGCCAAAATTTTGGGATACAAACACGTAGGGGATACACCATTTTTTAATTATTTTTTAAGAATATATGTTAATTTAACATAAAATACTAAATGTACACTATAAAAAGTGTTGGTGATATATAATTAAATTTGCTTTCAACCACCGACTTAAGCTTTTGGGTGAATTGGTGGTTTAATACGGTATTAGAGCAGGTAGTCCAGGAAGGTCCTGTATTCAAGCCCATGCATTGTCGATTTCTCCCCAATTAAAATTGATTCCACTTGTTGGACTTTTCAAATATTTCAATCCCACAAGTGAGGGGGATTGTTGTGATTTATAACTGAATTTGCTTTCAAGCACCAACTTAGCTTTTGAGTGAATAGGTGGTTTAATAAAAAGCATAAAATTCAAATTGATTAGCCATTTTAGTTTGTGAGTACAAGACTTTCAACTTGGGCAGGGACTAGAGTTTGTAGATGTCATCCTAACATTTAAAAAAAAAAAAGAAAAAAAAAAAATATATATATATACATATATATAAAAGAATTTCAACTTGAAATAGGCAATGGCTAACAATTAACACGATAGATAGATTTAGAGAAGAACAAAATTATGAACTTTAAGGATTGGACACTGGTAAACGGCAGTAACATTTGAAGTTCGCTGTCTAGAAGTGCACGAAAGGAGAGCCTATTCAACTTAAATTTTAGGTTTTGTGATTTTTTATACTTTTTTAAAAAGAAAGTTAATGGGCTTTAAAATTTCGGCCCATTCTTCTTTATTTTTCTTTTCCAGCATGTTTGTGAAGTGTCTCCAGTGTGTCCAAGCGTGTCTGATTTATTTATTTTTTATAAAAAACTCATGCAAAATGGTGTGTTGGACACGTGTTCAGACGAATCCGTGTCCGCAAAATGTCCGACTATACCACCTCTAATATGAAGTGTCCGTGCTTCTTAGCACTAGACCATCTGTTTCTACACTGCCATTTTTGCTTTCAAGGGTTTTTACTTTCAAAACTCTTGTTCCATTCATATGTTATAACTGTTACCATTTCTTTGGGATTGACAGTGGGAAAATTATTGGCAGCAGTCTTGATTGATAACAAACATATCTTTTGCATTGTGCAGTTTGGTTCTGGGATTATCTTACCTTGTGATAATGTGTTATAAATTGTCAAATTTGAAGGCTTTTCTCTTGTTTTCCATCAGGACCAGACTTTGGTTCACCTCCATCATTAATCCGAAAGAAACTACTTAATATACTTGGTGAGAGTGGAAAGACATCTTCTTTCATTGATGATATTGCAACGGTGAAGAGATATTGCTCTGAATCATCACATGCATTTCCTGTAACTTCTGATGATGAAGCTCTTTCAAGGGCAAAAAAGGAGGTTGGCTAACTGCTCTGATTGTATTTGTCTGAAATTTCAAATATAACTGATATCTAATGGTTTGTTTGGGCCTGTTATTGTACTAGGCAATGAATGAGAAAGTTCACTTCATCTGGACACAGTTTTCAGAATTAAATTCTTACCATAAGAAGCAGGTAGATGATGAAGAAAAATTAAATGTCAAGCTTGCAGAGTTGCTGTCATTGCTTACGTGTGATACAAAATCTGTCAACAAGAAAAGGAATAGGGCCAAGATCTCTGTTGAACTGCAGGAAATTTTGGCTCGCATGGATTCTAGAATCAATGACCTCTATACCTCATTACCTACTAATGCTATGCTTATCATTTGCACTGGTCATGGCGACATAACACTTGTACAGAGGTATGTGAATAGCCCAACTGAAATCTTTCCTTTCCATTTATTATGGTAAATTCTGACTGCTTCCAAGTACCTAAGTTTCCATTTAATAGATCAAAGAGAAAATAACAAAGAATCTAGCGATTATTAAAACATGGACGACAATATACTGCAGGAGTTACCACTTTCTGCCTGCTTCATTGAACTTATTCATGCAGTAATGTAATTACTTTGTTAAATCGATTGATGAAAACTTGTTAGCTGAGCTCAACATGACTTATGGCTATAAACTGTGATAAAGAAAATCTCCTTCTGTGTAAATTAGCAAAAAAGAAAGAAGAAAAACTCCTTGGATGGCTGATGTATGTAATTAGCTCTTTTGTTATTACTTTCCTTTGCGCTATATTATTAGCTTTTGTTTTCACTGCAACCCCAAAGCCAACGATCTGATTGCTGAAAAGAAAATTTGTTGAATTGAATAGTAGTATTGGTGGGAACGCAAAACGTTCCGGCTTTACCAATTGGTTAGAACTTGGAAGAAATAAGTTCAATCCATGGTAATTATTTATCTAAAAGAGAAGATGAATAGGAGTTTTACAGGGCTCGATAGTCCCTATTGGAGTTGGCTAGATTTAGTTCTTAATTCTTCTGTCTGTGTATGTGTTAAGCAGGTTAGGTAGGTAAATATCAATACCTTAGAGTTTGAATATGTTTTATTTCGAAATACTTTTATAGTTGTTTCATATCAATTCACACAAAAATTGGTGCATTTCTCATGAACTTCATTAGGAGTTGTGTTTCTAAACGGTATCTGATATAAAGGTTGATGTGTTATGGATGTAGATTGAGAAAAATGCTACAAGAGCAGAGTGAAACAAGCATATGCCGTGAGAAGATTGTTAAGATATTGGAAGAGCTCCATGCCCAAGCTGAAGTAGCTTTGTGTTTTGTATGTACAAAACATTGATTAGTAAAATCCTAAATCTCTCATCAATTTTGATCCTTTGATGTAATATATCATAATTTAAGATTCGAACTTTTTGGTCGATGAAACTATACTGAAGTTGATACATCCTACATGCACCTAGACCCACACGTTGGTAGAAATCACAAATATGACAACTGAAAATTTGTAATTTATAATTATCATAGGTTGTTTTATATCGGAAGCTCAAATTCATCGACTTTGAAATTGTCACCTGTC

mRNA sequence

ATGGAGATTTGTGAAACAAGTCTAATGCCCAGAGAATTAATCAAGTTTAAAGCTGAAAGTGCTCTTAGAATTTGGTTTTGGGAGGACATGACATCTAGATTAGGCATCCTCCCGCGGCTTGCGATCTCCTTGGTGAAAGAAATCTGGAAGTTCAAGGTTCTCAAAAAAGTGAAAATTTTTCCTCCTGATGATATTGTATTGATGTATAAACACAACAGAGAAGCTCCAAGGGATGTTCCCTTCTTGGTACCTTTACCCATAGGACCAGACTTTGGTTCACCTCCATCATTAATCCGAAAGAAACTACTTAATATACTTGGTGAGAGTGGAAAGACATCTTCTTTCATTGATGATATTGCAACGGTGAAGAGATATTGCTCTGAATCATCACATGCATTTCCTGTAACTTCTGATGATGAAGCTCTTTCAAGGGCAAAAAAGGAGGCAATGAATGAGAAAGTTCACTTCATCTGGACACAGTTTTCAGAATTAAATTCTTACCATAAGAAGCAGGTAGATGATGAAGAAAAATTAAATGTCAAGCTTGCAGAGTTGCTGTCATTGCTTACGTGTGATACAAAATCTGTCAACAAGAAAAGGAATAGGGCCAAGATCTCTGTTGAACTGCAGGAAATTTTGGCTCGCATGGATTCTAGAATCAATGACCTCTATACCTCATTACCTACTAATGCTATGCTTATCATTTGCACTGGTCATGGCGACATAACACTTGTACAGAGATTGAGAAAAATGCTACAAGAGCAGAGTGAAACAAGCATATGCCGTGAGAAGATTGTTAAGATATTGGAAGAGCTCCATGCCCAAGCTGAAGTAGCTTTGTGTTTTGTATGTACAAAACATTGATTAGTAAAATCCTAAATCTCTCATCAATTTTGATCCTTTGATGTAATATATCATAATTTAAGATTCGAACTTTTTGGTCGATGAAACTATACTGAAGTTGATACATCCTACATGCACCTAGACCCACACGTTGGTAGAAATCACAAATATGACAACTGAAAATTTGTAATTTATAATTATCATAGGTTGTTTTATATCGGAAGCTCAAATTCATCGACTTTGAAATTGTCACCTGTC

Coding sequence (CDS)

ATGGAGATTTGTGAAACAAGTCTAATGCCCAGAGAATTAATCAAGTTTAAAGCTGAAAGTGCTCTTAGAATTTGGTTTTGGGAGGACATGACATCTAGATTAGGCATCCTCCCGCGGCTTGCGATCTCCTTGGTGAAAGAAATCTGGAAGTTCAAGGTTCTCAAAAAAGTGAAAATTTTTCCTCCTGATGATATTGTATTGATGTATAAACACAACAGAGAAGCTCCAAGGGATGTTCCCTTCTTGGTACCTTTACCCATAGGACCAGACTTTGGTTCACCTCCATCATTAATCCGAAAGAAACTACTTAATATACTTGGTGAGAGTGGAAAGACATCTTCTTTCATTGATGATATTGCAACGGTGAAGAGATATTGCTCTGAATCATCACATGCATTTCCTGTAACTTCTGATGATGAAGCTCTTTCAAGGGCAAAAAAGGAGGCAATGAATGAGAAAGTTCACTTCATCTGGACACAGTTTTCAGAATTAAATTCTTACCATAAGAAGCAGGTAGATGATGAAGAAAAATTAAATGTCAAGCTTGCAGAGTTGCTGTCATTGCTTACGTGTGATACAAAATCTGTCAACAAGAAAAGGAATAGGGCCAAGATCTCTGTTGAACTGCAGGAAATTTTGGCTCGCATGGATTCTAGAATCAATGACCTCTATACCTCATTACCTACTAATGCTATGCTTATCATTTGCACTGGTCATGGCGACATAACACTTGTACAGAGATTGAGAAAAATGCTACAAGAGCAGAGTGAAACAAGCATATGCCGTGAGAAGATTGTTAAGATATTGGAAGAGCTCCATGCCCAAGCTGAAGTAGCTTTGTGTTTTGTATGTACAAAACATTGA

Protein sequence

MEICETSLMPRELIKFKAESALRIWFWEDMTSRLGILPRLAISLVKEIWKFKVLKKVKIFPPDDIVLMYKHNREAPRDVPFLVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALCFVCTKH*
Homology
[Close]
BLAST of CSPI06G20550 vs. ExPASy Swiss-Prot
Match: Q8L7M4 (Small RNA degrading nuclease 5 OS=Arabidopsis thaliana OX=3702 GN=SDN5 PE=2 SV=2)

HSP 1 Score: 242.7 bits (618), Expect = 5.3e-63
Identity = 123/205 (60.00%), Postives = 159/205 (77.56%), Query Frame = 0 

Query: 82  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEA 141
           L+ +  GPDFGSPP +IRKKLL +L ESGKT+S ID+I  VKRY SESS+A PV+SDDEA
Sbjct: 365 LLKIKHGPDFGSPPEVIRKKLLAVLNESGKTTSIIDNINIVKRYASESSNAIPVSSDDEA 424

Query: 142 LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN 201
           LS+A KE  N++  F+WTQFSELN++ + + DD +KLN +LAE++SLLTC+ KS  KK N
Sbjct: 425 LSKAVKEVKNKRSQFVWTQFSELNAHFQSRADDPQKLNSRLAEMISLLTCNKKSGLKKSN 484

Query: 202 RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSIC 261
              +S E +EIL +M+ R+  LY +LPTNAM I+CTGHGD ++V R+RKML+++ E    
Sbjct: 485 ---VSPETKEILKKMNERVQSLYAALPTNAMFIVCTGHGDTSIVHRVRKMLKDEDEIGFD 544

Query: 262 REKIVKILEELHAQAEVALCFVCTK 287
           REK+VK+LEEL AQAEVALCFV  K
Sbjct: 545 REKLVKVLEELQAQAEVALCFVGIK 566

[Close]
BLAST of CSPI06G20550 vs. ExPASy TrEMBL
Match: A0A0A0KDV5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G397180 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.6e-105
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0 

Query: 88  GPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKK 147
           GPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKK
Sbjct: 4   GPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKK 63

Query: 148 EAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRNRAKISV 207
           EAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRNRAKISV
Sbjct: 64  EAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRNRAKISV 123

Query: 208 ELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVK 267
           ELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVK
Sbjct: 124 ELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVK 183

Query: 268 ILEELHAQAEVALCFVCTKH 288
           ILEELHAQAEVALCFVCTKH
Sbjct: 184 ILEELHAQAEVALCFVCTKH 203

[Close]
BLAST of CSPI06G20550 vs. ExPASy TrEMBL
Match: A0A5D3DMF7 (Small RNA degrading nuclease 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00380 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 1.2e-102
Identity = 196/206 (95.15%), Postives = 200/206 (97.09%), Query Frame = 0 

Query: 82  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEA 141
           L+ +  GPDFGSPPSLIRKKLLNILGE GKTSSFIDDI+TVKRY SESSHAFPVTSDDEA
Sbjct: 367 LLKIKHGPDFGSPPSLIRKKLLNILGECGKTSSFIDDISTVKRYSSESSHAFPVTSDDEA 426

Query: 142 LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN 201
           LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN
Sbjct: 427 LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN 486

Query: 202 RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSIC 261
           RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDI LVQRLRKMLQEQSETSIC
Sbjct: 487 RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDIALVQRLRKMLQEQSETSIC 546

Query: 262 REKIVKILEELHAQAEVALCFVCTKH 288
           REKIVK+LEELHAQAEVALCFVCTKH
Sbjct: 547 REKIVKVLEELHAQAEVALCFVCTKH 572

[Close]
BLAST of CSPI06G20550 vs. ExPASy TrEMBL
Match: A0A1S3CT45 (small RNA degrading nuclease 5 OS=Cucumis melo OX=3656 GN=LOC103504042 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 1.2e-102
Identity = 196/206 (95.15%), Postives = 200/206 (97.09%), Query Frame = 0 

Query: 82  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEA 141
           L+ +  GPDFGSPPSLIRKKLLNILGE GKTSSFIDDI+TVKRY SESSHAFPVTSDDEA
Sbjct: 367 LLKIKHGPDFGSPPSLIRKKLLNILGECGKTSSFIDDISTVKRYSSESSHAFPVTSDDEA 426

Query: 142 LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN 201
           LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN
Sbjct: 427 LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN 486

Query: 202 RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSIC 261
           RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDI LVQRLRKMLQEQSETSIC
Sbjct: 487 RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDIALVQRLRKMLQEQSETSIC 546

Query: 262 REKIVKILEELHAQAEVALCFVCTKH 288
           REKIVK+LEELHAQAEVALCFVCTKH
Sbjct: 547 REKIVKVLEELHAQAEVALCFVCTKH 572

[Close]
BLAST of CSPI06G20550 vs. ExPASy TrEMBL
Match: A0A5A7UVD4 (Small RNA degrading nuclease 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G001140 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.6e-102
Identity = 195/200 (97.50%), Postives = 197/200 (98.50%), Query Frame = 0 

Query: 88  GPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKK 147
           GPDFGSPPSLIRKKLLNILGE GKTSSFIDDI+TVKRY SESSHAFPVTSDDEALSRAKK
Sbjct: 49  GPDFGSPPSLIRKKLLNILGECGKTSSFIDDISTVKRYSSESSHAFPVTSDDEALSRAKK 108

Query: 148 EAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRNRAKISV 207
           EAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRNRAKISV
Sbjct: 109 EAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRNRAKISV 168

Query: 208 ELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVK 267
           ELQEILARMDSRINDLYTSLPTNAMLIICTGHGDI LVQRLRKMLQEQSETSICREKIVK
Sbjct: 169 ELQEILARMDSRINDLYTSLPTNAMLIICTGHGDIALVQRLRKMLQEQSETSICREKIVK 228

Query: 268 ILEELHAQAEVALCFVCTKH 288
           +LEELHAQAEVALCFVCTKH
Sbjct: 229 VLEELHAQAEVALCFVCTKH 248

[Close]
BLAST of CSPI06G20550 vs. ExPASy TrEMBL
Match: A0A6J1EE80 (small RNA degrading nuclease 5-like OS=Cucurbita moschata OX=3662 GN=LOC111433387 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 5.1e-93
Identity = 177/206 (85.92%), Postives = 191/206 (92.72%), Query Frame = 0 

Query: 82  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEA 141
           L+ +  GP+FGSPPSLIRKKLL +LGE+GKTSSFIDD++TVKRY SESSHAFPVTSDDEA
Sbjct: 367 LLKIKHGPEFGSPPSLIRKKLLTVLGENGKTSSFIDDVSTVKRYSSESSHAFPVTSDDEA 426

Query: 142 LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN 201
           LSRAKKE MNE+VHFIWTQFSELNSYHKKQVDDEE+LNVKLAELLSLLTCD+KSVNKKRN
Sbjct: 427 LSRAKKEVMNERVHFIWTQFSELNSYHKKQVDDEERLNVKLAELLSLLTCDSKSVNKKRN 486

Query: 202 RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSIC 261
             KISVEL+EIL+RMD RI DLYTSLPTNAMLI+CTGHGDI LVQRLRKML+EQSET IC
Sbjct: 487 SRKISVELREILSRMDYRIKDLYTSLPTNAMLIVCTGHGDIALVQRLRKMLKEQSETMIC 546

Query: 262 REKIVKILEELHAQAEVALCFVCTKH 288
           REKIVKILEELHAQAEVALCF   KH
Sbjct: 547 REKIVKILEELHAQAEVALCFASIKH 572

[Close]
BLAST of CSPI06G20550 vs. NCBI nr
Match: XP_004146782.1 (small RNA degrading nuclease 5 [Cucumis sativus] >KAE8647276.1 hypothetical protein Csa_003184 [Cucumis sativus])

HSP 1 Score: 392.1 bits (1006), Expect = 4.1e-105
Identity = 201/206 (97.57%), Postives = 203/206 (98.54%), Query Frame = 0 

Query: 82  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEA 141
           L+ +  GPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEA
Sbjct: 367 LLKIKHGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEA 426

Query: 142 LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN 201
           LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN
Sbjct: 427 LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN 486

Query: 202 RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSIC 261
           RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSIC
Sbjct: 487 RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSIC 546

Query: 262 REKIVKILEELHAQAEVALCFVCTKH 288
           REKIVKILEELHAQAEVALCFVCTKH
Sbjct: 547 REKIVKILEELHAQAEVALCFVCTKH 572

[Close]
BLAST of CSPI06G20550 vs. NCBI nr
Match: XP_008466693.1 (PREDICTED: small RNA degrading nuclease 5 [Cucumis melo] >TYK24791.1 small RNA degrading nuclease 5 [Cucumis melo var. makuwa])

HSP 1 Score: 382.9 bits (982), Expect = 2.5e-102
Identity = 196/206 (95.15%), Postives = 200/206 (97.09%), Query Frame = 0 

Query: 82  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEA 141
           L+ +  GPDFGSPPSLIRKKLLNILGE GKTSSFIDDI+TVKRY SESSHAFPVTSDDEA
Sbjct: 367 LLKIKHGPDFGSPPSLIRKKLLNILGECGKTSSFIDDISTVKRYSSESSHAFPVTSDDEA 426

Query: 142 LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN 201
           LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN
Sbjct: 427 LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN 486

Query: 202 RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSIC 261
           RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDI LVQRLRKMLQEQSETSIC
Sbjct: 487 RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDIALVQRLRKMLQEQSETSIC 546

Query: 262 REKIVKILEELHAQAEVALCFVCTKH 288
           REKIVK+LEELHAQAEVALCFVCTKH
Sbjct: 547 REKIVKVLEELHAQAEVALCFVCTKH 572

[Close]
BLAST of CSPI06G20550 vs. NCBI nr
Match: KAA0059832.1 (small RNA degrading nuclease 5 [Cucumis melo var. makuwa])

HSP 1 Score: 382.5 bits (981), Expect = 3.2e-102
Identity = 195/200 (97.50%), Postives = 197/200 (98.50%), Query Frame = 0 

Query: 88  GPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKK 147
           GPDFGSPPSLIRKKLLNILGE GKTSSFIDDI+TVKRY SESSHAFPVTSDDEALSRAKK
Sbjct: 49  GPDFGSPPSLIRKKLLNILGECGKTSSFIDDISTVKRYSSESSHAFPVTSDDEALSRAKK 108

Query: 148 EAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRNRAKISV 207
           EAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRNRAKISV
Sbjct: 109 EAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRNRAKISV 168

Query: 208 ELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVK 267
           ELQEILARMDSRINDLYTSLPTNAMLIICTGHGDI LVQRLRKMLQEQSETSICREKIVK
Sbjct: 169 ELQEILARMDSRINDLYTSLPTNAMLIICTGHGDIALVQRLRKMLQEQSETSICREKIVK 228

Query: 268 ILEELHAQAEVALCFVCTKH 288
           +LEELHAQAEVALCFVCTKH
Sbjct: 229 VLEELHAQAEVALCFVCTKH 248

[Close]
BLAST of CSPI06G20550 vs. NCBI nr
Match: XP_038886453.1 (small RNA degrading nuclease 5 [Benincasa hispida])

HSP 1 Score: 367.5 bits (942), Expect = 1.1e-97
Identity = 187/206 (90.78%), Postives = 196/206 (95.15%), Query Frame = 0 

Query: 82  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEA 141
           L+ +  GPDFGSPPSLIRKKLLNILGESGKTSSFID+I+TVKRY SES+HAFPVTSDDEA
Sbjct: 367 LLKIKHGPDFGSPPSLIRKKLLNILGESGKTSSFIDNISTVKRYSSESTHAFPVTSDDEA 426

Query: 142 LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN 201
           LSRAKKEAMNE+VHFIWTQFSELNSYHKKQ DDEE+LNVKLAELLSLLTCDTK+VNKKRN
Sbjct: 427 LSRAKKEAMNERVHFIWTQFSELNSYHKKQADDEERLNVKLAELLSLLTCDTKTVNKKRN 486

Query: 202 RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSIC 261
             KIS EL+EILARMDSRINDLYTSLPTNAMLIICTGHGDI LVQRLRKMLQEQSETSIC
Sbjct: 487 SPKISAELREILARMDSRINDLYTSLPTNAMLIICTGHGDIALVQRLRKMLQEQSETSIC 546

Query: 262 REKIVKILEELHAQAEVALCFVCTKH 288
           REKIVKILEELHAQAEVALCFVC KH
Sbjct: 547 REKIVKILEELHAQAEVALCFVCIKH 572

[Close]
BLAST of CSPI06G20550 vs. NCBI nr
Match: XP_023525579.1 (small RNA degrading nuclease 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.9 bits (899), Expect = 1.0e-92
Identity = 177/206 (85.92%), Postives = 191/206 (92.72%), Query Frame = 0 

Query: 82  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEA 141
           L+ +  GP+FGSPPSLIRKKLL ILGE+GKTSSFIDD++TVKRY SESSHAFPVTSDDEA
Sbjct: 367 LLKIKHGPEFGSPPSLIRKKLLTILGENGKTSSFIDDVSTVKRYSSESSHAFPVTSDDEA 426

Query: 142 LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN 201
           LSRAKKE MNE+VHFIWTQFSELNSYHKKQVDDEE+LNVKLAELLSLLTCD+KS NKKRN
Sbjct: 427 LSRAKKEVMNERVHFIWTQFSELNSYHKKQVDDEERLNVKLAELLSLLTCDSKSANKKRN 486

Query: 202 RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSIC 261
             KISVEL+EIL+RMDSRI DLYTSLPTNAMLI+CTGHGDI LVQRLRKML+EQSET IC
Sbjct: 487 SRKISVELREILSRMDSRIKDLYTSLPTNAMLIVCTGHGDIALVQRLRKMLKEQSETMIC 546

Query: 262 REKIVKILEELHAQAEVALCFVCTKH 288
           REKIVK+LEELHAQAEVALCF   KH
Sbjct: 547 REKIVKMLEELHAQAEVALCFASIKH 572

[Close]
BLAST of CSPI06G20550 vs. TAIR 10
Match: AT5G25800.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 242.7 bits (618), Expect = 3.7e-64
Identity = 123/205 (60.00%), Postives = 159/205 (77.56%), Query Frame = 0 

Query: 82  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEA 141
           L+ +  GPDFGSPP +IRKKLL +L ESGKT+S ID+I  VKRY SESS+A PV+SDDEA
Sbjct: 365 LLKIKHGPDFGSPPEVIRKKLLAVLNESGKTTSIIDNINIVKRYASESSNAIPVSSDDEA 424

Query: 142 LSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRN 201
           LS+A KE  N++  F+WTQFSELN++ + + DD +KLN +LAE++SLLTC+ KS  KK N
Sbjct: 425 LSKAVKEVKNKRSQFVWTQFSELNAHFQSRADDPQKLNSRLAEMISLLTCNKKSGLKKSN 484

Query: 202 RAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSIC 261
              +S E +EIL +M+ R+  LY +LPTNAM I+CTGHGD ++V R+RKML+++ E    
Sbjct: 485 ---VSPETKEILKKMNERVQSLYAALPTNAMFIVCTGHGDTSIVHRVRKMLKDEDEIGFD 544

Query: 262 REKIVKILEELHAQAEVALCFVCTK 287
           REK+VK+LEEL AQAEVALCFV  K
Sbjct: 545 REKLVKVLEELQAQAEVALCFVGIK 566

The following BLAST results are available for this feature:
BLAST of CSPI06G20550 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L7M45.3e-6360.00Small RNA degrading nuclease 5 OS=Arabidopsis thaliana OX=3702 GN=SDN5 PE=2 SV=2[more]
BLAST of CSPI06G20550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDV52.6e-105100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G397180 PE=4 SV=1[more]
A0A5D3DMF71.2e-10295.15Small RNA degrading nuclease 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3CT451.2e-10295.15small RNA degrading nuclease 5 OS=Cucumis melo OX=3656 GN=LOC103504042 PE=4 SV=1[more]
A0A5A7UVD41.6e-10297.50Small RNA degrading nuclease 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A6J1EE805.1e-9385.92small RNA degrading nuclease 5-like OS=Cucurbita moschata OX=3662 GN=LOC11143338... [more]
BLAST of CSPI06G20550 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146782.14.1e-10597.57small RNA degrading nuclease 5 [Cucumis sativus] >KAE8647276.1 hypothetical prot... [more]
XP_008466693.12.5e-10295.15PREDICTED: small RNA degrading nuclease 5 [Cucumis melo] >TYK24791.1 small RNA d... [more]
KAA0059832.13.2e-10297.50small RNA degrading nuclease 5 [Cucumis melo var. makuwa][more]
XP_038886453.11.1e-9790.78small RNA degrading nuclease 5 [Benincasa hispida][more]
XP_023525579.11.0e-9285.92small RNA degrading nuclease 5-like [Cucurbita pepo subsp. pepo][more]
BLAST of CSPI06G20550 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G25800.13.7e-6460.00Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12801:SF115LD29573Pcoord: 88..272
NoneNo IPR availablePANTHERPTHR12801RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATEDcoord: 88..272

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G20550.1CSPI06G20550.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003676 nucleic acid binding