CSPI06G20350 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G20350
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 18414411 .. 18414656 (-)
RNA-Seq ExpressionCSPI06G20350
SyntenyCSPI06G20350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCGTGGATTAGGTCCATGACTTTGCATTACAAGAAATTGGGATTCTTCCAACACCGTCACACGTTGGCATACATACTCGAAAGCGTCGGGAAAGGATCTGTTGAAGTACATATTGTCATTGGGAAGAAATTCGGTAGTGGTGCATCGGAGGAGCAATTTCAGACGCGCAAACGCAAAGGCGTCGAGAATGACTTACTCCCGACGCTGTCAATGTCGATGGATGAAGCACAACGACAATGA

mRNA sequence

ATGGAGTCGTGGATTAGGTCCATGACTTTGCATTACAAGAAATTGGGATTCTTCCAACACCGTCACACGTTGGCATACATACTCGAAAGCGTCGGGAAAGGATCTGTTGAAGTACATATTGTCATTGGGAAGAAATTCGGTAGTGGTGCATCGGAGGAGCAATTTCAGACGCGCAAACGCAAAGGCGTCGAGAATGACTTACTCCCGACGCTGTCAATGTCGATGGATGAAGCACAACGACAATGA

Coding sequence (CDS)

ATGGAGTCGTGGATTAGGTCCATGACTTTGCATTACAAGAAATTGGGATTCTTCCAACACCGTCACACGTTGGCATACATACTCGAAAGCGTCGGGAAAGGATCTGTTGAAGTACATATTGTCATTGGGAAGAAATTCGGTAGTGGTGCATCGGAGGAGCAATTTCAGACGCGCAAACGCAAAGGCGTCGAGAATGACTTACTCCCGACGCTGTCAATGTCGATGGATGAAGCACAACGACAATGA

Protein sequence

MESWIRSMTLHYKKLGFFQHRHTLAYILESVGKGSVEVHIVIGKKFGSGASEEQFQTRKRKGVENDLLPTLSMSMDEAQRQ*
Homology
[Close]
BLAST of CSPI06G20350 vs. ExPASy TrEMBL
Match: A0A0A0KIW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G384560 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.1e-36
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1  MESWIRSMTLHYKKLGFFQHRHTLAYILESVGKGSVEVHIVIGKKFGSGASEEQFQTRKR 60
          MESWIRSMTLHYKKLGFFQHRHTLAYILESVGKGSVEVHIVIGKKFGSGASEEQF TRKR
Sbjct: 1  MESWIRSMTLHYKKLGFFQHRHTLAYILESVGKGSVEVHIVIGKKFGSGASEEQFLTRKR 60

Query: 61 KGVENDLLPTLSMSMDEAQRQ 82
          KGVENDLLPTL MSMDEAQRQ
Sbjct: 61 KGVENDLLPTLLMSMDEAQRQ 81

[Close]
BLAST of CSPI06G20350 vs. ExPASy TrEMBL
Match: A0A5D3C0L5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00120 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 0 

Query: 3  SWIRSMTLHYKKLGFFQHRHTLAYILESVGKGSVEVHIVIGKKFGSGASEEQFQTRKRKG 62
          S I ++ +HYKK    + R    Y L+S+GKGS+ VH V+GKK G  AS+E F  RKRKG
Sbjct: 2  SLIGALFVHYKKSEVSRCRQASTYTLKSIGKGSLGVHSVVGKKVGCSASKEAFLMRKRKG 61

Query: 63 VENDLLPTLSM 74
          ++N LLP   M
Sbjct: 62 IKNGLLPMPEM 72

[Close]
BLAST of CSPI06G20350 vs. NCBI nr
Match: KGN47721.1 (hypothetical protein Csa_018311 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1  MESWIRSMTLHYKKLGFFQHRHTLAYILESVGKGSVEVHIVIGKKFGSGASEEQFQTRKR 60
          MESWIRSMTLHYKKLGFFQHRHTLAYILESVGKGSVEVHIVIGKKFGSGASEEQF TRKR
Sbjct: 1  MESWIRSMTLHYKKLGFFQHRHTLAYILESVGKGSVEVHIVIGKKFGSGASEEQFLTRKR 60

Query: 61 KGVENDLLPTLSMSMDEAQRQ 82
          KGVENDLLPTL MSMDEAQRQ
Sbjct: 61 KGVENDLLPTLLMSMDEAQRQ 81

[Close]
BLAST of CSPI06G20350 vs. NCBI nr
Match: KAA0063761.1 (hypothetical protein E6C27_scaffold1290G00500 [Cucumis melo var. makuwa] >TYK05513.1 hypothetical protein E5676_scaffold178G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-08
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 0 

Query: 3  SWIRSMTLHYKKLGFFQHRHTLAYILESVGKGSVEVHIVIGKKFGSGASEEQFQTRKRKG 62
          S I ++ +HYKK    + R    Y L+S+GKGS+ VH V+GKK G  AS+E F  RKRKG
Sbjct: 2  SLIGALFVHYKKSEVSRCRQASTYTLKSIGKGSLGVHSVVGKKVGCSASKEAFLMRKRKG 61

Query: 63 VENDLLPTLSM 74
          ++N LLP   M
Sbjct: 62 IKNGLLPMPEM 72

The following BLAST results are available for this feature:
BLAST of CSPI06G20350 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G20350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIW66.1e-3697.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G384560 PE=4 SV=1[more]
A0A5D3C0L51.4e-0849.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CSPI06G20350 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47721.11.3e-3597.53hypothetical protein Csa_018311 [Cucumis sativus][more]
KAA0063761.12.9e-0849.30hypothetical protein E6C27_scaffold1290G00500 [Cucumis melo var. makuwa] >TYK055... [more]
BLAST of CSPI06G20350 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G20350.1CSPI06G20350.1mRNA