CSPI06G20330 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G20330
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 18387606 .. 18387880 (+)
RNA-Seq Expression	CSPI06G20330
Synteny	CSPI06G20330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGTGTTCGAATTGCAGGTGACCGACGACGTGGTTCGCGTGTAGAGATGATCAACGTTCGGATTACAGGCGTTCGGGTCTCATTCGCGTGAAGAGTTGGTCGGCGTTCGGATTGTAGGTGAGCAGCATCGTTTGCGTGCAGATTATCGTGAGTGGTTGTTCGCATGGTGGTTCGGATTGTGGATGGCAGCTGGTGAGTGGTGGTTTGGATGGCAGCTGCTGGGTGGTCGATGGCTGGCGGCTGGTGGCTGGTGGCTGGGCAGCGACTTAA

mRNA sequence

ATGGCTGGTGTTCGAATTGCAGGTGACCGACGACGTGGTTCGCGTGTAGAGATGATCAACGTTCGGATTACAGGCGTTCGGGTGAGCAGCATCGTTTGCGTGCAGATTATCGTGAGTGGTTGTTCGCATGGTGGTTCGGATTGTGGATGGCAGCTGGTGAGTGGTGGTTTGGATGGCAGCTGCTGGGTGGTCGATGGCTGGCGGCTGGTGGCTGGTGGCTGGGCAGCGACTTAA

Coding sequence (CDS)

ATGGCTGGTGTTCGAATTGCAGGTGACCGACGACGTGGTTCGCGTGTAGAGATGATCAACGTTCGGATTACAGGCGTTCGGGTGAGCAGCATCGTTTGCGTGCAGATTATCGTGAGTGGTTGTTCGCATGGTGGTTCGGATTGTGGATGGCAGCTGGTGAGTGGTGGTTTGGATGGCAGCTGCTGGGTGGTCGATGGCTGGCGGCTGGTGGCTGGTGGCTGGGCAGCGACTTAA

Protein sequence

MAGVRIAGDRRRGSRVEMINVRITGVRVSSIVCVQIIVSGCSHGGSDCGWQLVSGGLDGSCWVVDGWRLVAGGWAAT*

Homology

[Close]

BLAST of CSPI06G20330 vs. ExPASy TrEMBL
Match: A0A0A0KFT9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G383560 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MAGVRIAGDRRRGSRVEMINVRITGVRVSSIVCVQIIVSGCSHGGSDCGWQLVSGGLDGS 60
          MAGVRIAGDRRRGSRVEMINVRITGVRVSSIVCVQIIV GCSHGGSDCGWQLVSGGLDGS
Sbjct: 1  MAGVRIAGDRRRGSRVEMINVRITGVRVSSIVCVQIIVGGCSHGGSDCGWQLVSGGLDGS 60

Query: 61 CWVVDGWRL 70
          CWVVDGW L
Sbjct: 61 CWVVDGWWL 69

[Close]

BLAST of CSPI06G20330 vs. NCBI nr
Match: KGN47719.1 (hypothetical protein Csa_018318 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 2.9e-29
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MAGVRIAGDRRRGSRVEMINVRITGVRVSSIVCVQIIVSGCSHGGSDCGWQLVSGGLDGS 60
          MAGVRIAGDRRRGSRVEMINVRITGVRVSSIVCVQIIV GCSHGGSDCGWQLVSGGLDGS
Sbjct: 1  MAGVRIAGDRRRGSRVEMINVRITGVRVSSIVCVQIIVGGCSHGGSDCGWQLVSGGLDGS 60

Query: 61 CWVVDGWRL 70
          CWVVDGW L
Sbjct: 61 CWVVDGWWL 69

The following BLAST results are available for this feature:

BLAST of CSPI06G20330 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G20330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFT9	1.4e-29	97.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G383560 PE=4 SV=1	[more]

BLAST of CSPI06G20330 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47719.1	2.9e-29	97.10	hypothetical protein Csa_018318 [Cucumis sativus]	[more]

BLAST of CSPI06G20330 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G20330.1	CSPI06G20330.1	mRNA