CSPI06G19940 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G19940
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 17878324 .. 17878860 (-)
RNA-Seq ExpressionCSPI06G19940
SyntenyCSPI06G19940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTCAGAGTCTTCTCCGGCAACAACCAGGTGATTCCGTCGAAATCAGAGACGGCGACGATTGTGTATGGAGGTGCCGGAAATGTGAAATCTGTGATTCCTAAGAAGAGGAGGTTAGTGAAGAGGATGATGTACGATTGTATTAAAGAATGGATCAAATCCCTGTTTTGTCCCACGCCGAAACATGGGTAATCGCAGAAAGCCCATTTCTCAACATTTTTATAATCATCATCTCACTGGTTTCATCGTGTGTTGTTGTATTTGTTTTTGTGTAAGGCTCTGTGTTTTGTTTTATGTTTCATCTAATTACTCAGAAAACAGAGCCGTTTTCTTTTCTTTTCTGTTCTTTTCTTTTCTTTTCTTTTCTTTTCGTTTTCAACGTGATGCAAATAAGTTGTGTTTTGTTCCTTGTTTCTATGTCATTGTGAGTGTTGTTTTTGAATGAAAGAGTGGGTAATTGGGTGTTGTTCAAATTATGTTTAAAACAGAGGCTCCACAAATCCGCCGGAAAAAGAAGCAACTCATCAGCACTGA

mRNA sequence

ATGAAATTCAGAGTCTTCTCCGGCAACAACCAGGTGATTCCGTCGAAATCAGAGACGGCGACGATTGTGTATGGAGGTGCCGGAAATGTGAAATCTGTGATTCCTAAGAAGAGGAGGTTAGTGAAGAGGATGATGTACGATTGTATTAAAGAATGGATCAAATCCCTGTTTTGTCCCACGCCGAAACATGGAGGCTCCACAAATCCGCCGGAAAAAGAAGCAACTCATCAGCACTGA

Coding sequence (CDS)

ATGAAATTCAGAGTCTTCTCCGGCAACAACCAGGTGATTCCGTCGAAATCAGAGACGGCGACGATTGTGTATGGAGGTGCCGGAAATGTGAAATCTGTGATTCCTAAGAAGAGGAGGTTAGTGAAGAGGATGATGTACGATTGTATTAAAGAATGGATCAAATCCCTGTTTTGTCCCACGCCGAAACATGGAGGCTCCACAAATCCGCCGGAAAAAGAAGCAACTCATCAGCACTGA

Protein sequence

MKFRVFSGNNQVIPSKSETATIVYGGAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCPTPKHGGSTNPPEKEATHQH*
Homology
BLAST of CSPI06G19940 vs. ExPASy TrEMBL
Match: A0A0A0KFQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.1e-37
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0

Query: 1  MKFRVFSGNNQVIPSKSETATIVYGGAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCPT 60
          MKFRVFSGNNQVIP+KSETATIVYGGAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCPT
Sbjct: 1  MKFRVFSGNNQVIPAKSETATIVYGGAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCPT 60

Query: 61 PKHGGSTNPPEKEATHQH 79
          PK GGSTNPPEKEATHQH
Sbjct: 61 PKLGGSTNPPEKEATHQH 78

BLAST of CSPI06G19940 vs. ExPASy TrEMBL
Match: A0A5D3D590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00190 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.9e-19
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1  MKFRVFSGNNQVIPSKSETA---TIVYGGAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLF 60
          MKFRVFS NN V+P K++TA    IVY GAGN+KSVIPKKR+LVKRMMYDCIKEWIKSLF
Sbjct: 1  MKFRVFSANNPVVPEKAQTALEPAIVYRGAGNMKSVIPKKRKLVKRMMYDCIKEWIKSLF 60

Query: 61 CPTPK 63
           PTP+
Sbjct: 61 RPTPE 65

BLAST of CSPI06G19940 vs. NCBI nr
Match: KAE8647261.1 (hypothetical protein Csa_018288 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 3.6e-27
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0

Query: 1  MKFRVFSGNNQVIPSKSETATIVYGGAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCPT 60
          MKFRVFSGNNQVIP+KSETATIVYGGAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCPT
Sbjct: 1  MKFRVFSGNNQVIPAKSETATIVYGGAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCPT 60

Query: 61 PKHG 65
          PK G
Sbjct: 61 PKLG 64

BLAST of CSPI06G19940 vs. NCBI nr
Match: TYK18680.1 (hypothetical protein E5676_scaffold481G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 8.0e-19
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1  MKFRVFSGNNQVIPSKSETA---TIVYGGAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLF 60
          MKFRVFS NN V+P K++TA    IVY GAGN+KSVIPKKR+LVKRMMYDCIKEWIKSLF
Sbjct: 1  MKFRVFSANNPVVPEKAQTALEPAIVYRGAGNMKSVIPKKRKLVKRMMYDCIKEWIKSLF 60

Query: 61 CPTPK 63
           PTP+
Sbjct: 61 RPTPE 65

BLAST of CSPI06G19940 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 12  VIPSKSETA-----TIVY-GGAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCPTPK 63
           +IP+K +TA     ++ Y  G G VKSVIPKKR+LVK MMY CIK+++KSLF P PK
Sbjct: 64  LIPAKPDTAVTSTNSVEYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRPPPK 120

BLAST of CSPI06G19940 vs. NCBI nr
Match: KAG6602131.1 (hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 32/59 (54.24%), Postives = 36/59 (61.02%), Query Frame = 0

Query: 14  PSKSETATIVYG---GAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCPTPKHGGSTNP 70
           P  + T+T   G   G G VKSVIPKKR+LVK MMY CIK +IKSLF   PK      P
Sbjct: 100 PETAVTSTNSLGYRAGVGKVKSVIPKKRKLVKTMMYHCIKNFIKSLFRRPPKTHNRPKP 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KFQ19.1e-3797.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1[more]
A0A5D3D5903.9e-1976.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAE8647261.13.6e-2796.88hypothetical protein Csa_018288 [Cucumis sativus][more]
TYK18680.18.0e-1976.92hypothetical protein E5676_scaffold481G00190 [Cucumis melo var. makuwa][more]
KAG6602134.11.2e-0657.89hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602131.13.8e-0554.24hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G19940.1CSPI06G19940.1mRNA