CSPI06G19850 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G19850
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 17818858 .. 17819349 (-)
RNA-Seq Expression	CSPI06G19850
Synteny	CSPI06G19850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTAAAAATTCCTTTGATCGGTAAATTGGCAAATCTGATCGGTAAATTGGCAAATCTGAACATGAACAGAGGAGGTTCAGTTTGCCAATACCATCATCGAACGCCTTGTCTTTTCAATTTACTTACAAATTCGTACACTCAAAAAAGGCAATTCGATTCTCCATTTCAAAGCCCGAAGAAGATACGGATCATCATCAATCAAAAACACAATGTTCATCAATAAAATGAAGACCCAAAACCAGCAAATTCTGCCCATTCTGAAGTGCAGCATATCAGTTTTTAATGATCTTTCTTACTGTATGTAAAGTTTACCACATACTTATATGTACAAGCATCTCTGGTTAGTCCACTCGGCTACGCCACTAATAGCCCTGAAATTGAACTGCTAGCTGCAGCTATACGTATGCAGAAGGACAGAGACAGAGACAGAGACAGAGACAGAGAGAGAGACCTTGTGTGCCCTGAATCGCACAAACAGGCATTGTAG

mRNA sequence

ATGAAATTAAAAATTCCTTTGATCGGTAAATTGGCAAATCTGATCGGTAAATTGGCAAATCTGAACATGAACAGAGGAGGTTCAGTTTGCCAATACCATCATCGAACGCCTTGTCTTTTCAATTTACTTACAAATTCGTACACTCAAAAAAGGCAATTCGATTCTCCATTTCAAAGCCCGAAGAAGATACGGATCATCATCAATCAAAAACACAATTTTACCACATACTTATATGTACAAGCATCTCTGGTTAGTCCACTCGGCTACGCCACTAATAGCCCTGAAATTGAACTGCTAGCTGCAGCTATACGTATGCAGAAGGACAGAGACAGAGACAGAGACAGAGACAGAGAGAGAGACCTTGTGTGCCCTGAATCGCACAAACAGGCATTGTAG

Coding sequence (CDS)

ATGAAATTAAAAATTCCTTTGATCGGTAAATTGGCAAATCTGATCGGTAAATTGGCAAATCTGAACATGAACAGAGGAGGTTCAGTTTGCCAATACCATCATCGAACGCCTTGTCTTTTCAATTTACTTACAAATTCGTACACTCAAAAAAGGCAATTCGATTCTCCATTTCAAAGCCCGAAGAAGATACGGATCATCATCAATCAAAAACACAATTTTACCACATACTTATATGTACAAGCATCTCTGGTTAGTCCACTCGGCTACGCCACTAATAGCCCTGAAATTGAACTGCTAGCTGCAGCTATACGTATGCAGAAGGACAGAGACAGAGACAGAGACAGAGACAGAGAGAGAGACCTTGTGTGCCCTGAATCGCACAAACAGGCATTGTAG

Protein sequence

MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSPKKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRDRDRERDLVCPESHKQAL*

Homology

[Close]

BLAST of CSPI06G19850 vs. ExPASy TrEMBL
Match: A0A0A0KD93 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367160 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.5e-63
Identity = 127/131 (96.95%), Postives = 127/131 (96.95%), Query Frame = 0


Query: 1   MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP 60
           MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP
Sbjct: 1   MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP 60

Query: 61  KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRDRDRERD 120
           KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQK    DRDRDRERD
Sbjct: 61  KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQK----DRDRDRERD 120

Query: 121 LVCPESHKQAL 132
           LVCPESHKQAL
Sbjct: 121 LVCPESHKQAL 127

[Close]

BLAST of CSPI06G19850 vs. NCBI nr
Match: KGN47670.1 (hypothetical protein Csa_018248 [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 3.0e-63
Identity = 127/131 (96.95%), Postives = 127/131 (96.95%), Query Frame = 0


Query: 1   MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP 60
           MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP
Sbjct: 1   MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP 60

Query: 61  KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRDRDRERD 120
           KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQK    DRDRDRERD
Sbjct: 61  KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQK----DRDRDRERD 120

Query: 121 LVCPESHKQAL 132
           LVCPESHKQAL
Sbjct: 121 LVCPESHKQAL 127

The following BLAST results are available for this feature:

BLAST of CSPI06G19850 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G19850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD93	1.5e-63	96.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367160 PE=4 SV=1	[more]

BLAST of CSPI06G19850 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47670.1	3.0e-63	96.95	hypothetical protein Csa_018248 [Cucumis sativus]	[more]

BLAST of CSPI06G19850 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G19850.1	CSPI06G19850.1	mRNA