CSPI06G19170 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G19170
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr6: 17366817 .. 17368752 (+)
RNA-Seq Expression	CSPI06G19170
Synteny	CSPI06G19170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGGTAAATCAAATAGAGGAGGAAGAGGAAACAGAAACAAACCTCGGTGTCAAATTTGTACAAAATTCGGTCACATTGTTGATCGATGCTACTTTCGATATGCTCCAAGAAATAATTCAGGTTTCTCTCCAAACTCATCTACACCTTCATATACTAATAATTCTTACAATCCACAGATGGCTGCCATGATTGCTGCTCCTGATCTGAATATTGATTCTAATTGGTACCCTGACTCTGGAGCTACAAACCACTTAACACACAGCTTGAGTAATCTATCCACTGGAGCTGATTATAATGGAGGAAATCAGATATATGCAGTAAATGGGTCAGGTTTGCCAATACTTTATTATGGTTCTTTGCATTTTAATTTAATTCATCATTTATTCCTTCAAAATCTTTGGTTCTGGAAAATTTACTTCATATCTCCTCCATTACAAAGTTTTTTTTGAATTTCATCCCGCTGTTTGTTATGTGAAGGATCAGGGAACTGGCCAAATTCTTCTCCAAGGACACCTCTGTAATGGTGTATACAAGTTTAGCCTCAAATCATCTTCTCCAAGTTTTTTGAAATTTGAATCTAATACTAGTCCTATTGCTTTAAGTATTGTCTTACATAATTCTCATGTGAATGATATTGATATTTGGCATAAGAGATTAAGTCATCCTCACTCAAATGTTATCCGAAATGCCTTGAAAAATGTTTATAATGCCAATATTAGTATGAATAAAATGAATTTATGTGAAGCATGTGCTCTAGAAAACATCATGCTCTTCCCTTTCCTACTTCAAATACTGAATATATATATCCTTTACAACTCATTGTATGTGATTTTTGGGACCCTGCTTTTAACCTATCTAAAAATGGCTGCGTATATTATATTAGTTTTGTTGATGCATATAGTAGATATACTTGGATTTATTTTCTTCAATCTAAGTTTGATGCATTTGTAGCCTTTCAAAAATTCAAAACATTCATTGAAAAACAACTTGGCCGACCAATCATAATCTTTCAAACTGACAGGGGAAGTGAATTCAAACCTTCCATACCTTACCTAAACAACCATGACGTTGAACATAGATTAACCTGTCCACACACTTCTCTCTCAAGCTACTTTACCTTTATCCTTTTGGGATGAAGCTTTCTCAACAACTGTGTATCTTATCAATCGCCTACCCACACCTATTCTTAATCACCTTAGTCCATTGGAAAAATTATTTGGTCAGGAAACCTAACTATCCTTCTCTAAAAAAATTTGGTTGTAAATGTTGTCCTTTCATCAAACCTTATAAATTCCACAAACTATCTTACAGATTCACATCATGTACCTTCTTAGGCTACAGTTCATCCCACAAAGGTTATAATTGCCTTTCTCAAGATGGTCGCATTTACATATCCAGACATGTTCTATTTGATGAAGATTCCTTTTCCTATGCATCTTTTTCATCTCATTGTAAAACTTTATCAACAAAAAGTGTCTTGGCTACTCCAATCCAGTCCATAGTCCATAAGCCAACAATGAATCATAATGAAGAGAGGCAACACACTAATACATTCACTGATAATAATGATAATTTGAATTCTACTGCTGTGTATCCCTTAGAAACAGGAAGTCAGGAACAATATGGAGATGAGTTACCAAGAGGAGACCGTGAGAATAAGCAAATATCATCACAGACCCAAGATGACTCTACCAATACAGATCAATCCTTAAATCTCAATACTCATCCAATGGTAACTCGGAGCAAAAGTGGTATTTATAAACCTAAACCTTTCTTAATTGATTATACTGAGACTGAAGCTAAAGAAGCTTTAAAGCGTCCTCACTGGAGGAAAGCTATGGAAGAAGATTTTAAAGCTTTAAAACAAAATAACACATGGAGTCTCACTCAGAAACAGGAAAATCAAAAAATGTATTGTGTTGGCTGTAAA

mRNA sequence

ATGGTGGAGGTAAATCAAATAGAGGAGGAAGAGGAAACAGAAACAAACCTCGGTGTCAAATTTGTACAAAATTCGGTCACATTGTTGATCGATGCTACTTTCGATATGCTCCAAGAAATAATTCAGATGGCTGCCATGATTGCTGCTCCTGATCTGAATATTGATTCTAATTGGTACCCTGACTCTGGAGCTACAAACCACTTAACACACAGCTTGAGTAATCTATCCACTGGAGCTGATTATAATGGAGGAAATCAGATATATGCAGTAAATGGGTCAGGATCAGGGAACTGGCCAAATTCTTCTCCAAGGACACCTCTTTCATCCCACAAAGGTTATAATTGCCTTTCTCAAGATGGTCGCATTTACATATCCAGACATGTTCTATTTGATGAAGATTCCTTTTCCTATGCATCTTTTTCATCTCATTGTAAAACTTTATCAACAAAAAGTGTCTTGGCTACTCCAATCCAGTCCATAGTCCATAAGCCAACAATGAATCATAATGAAGAGAGGCAACACACTAATACATTCACTGATAATAATGATAATTTGAATTCTACTGCTGTGTATCCCTTAGAAACAGGAAGTCAGGAACAATATGGAGATGAGTTACCAAGAGGAGACCGTGAGAATAAGCAAATATCATCACAGACCCAAGATGACTCTACCAATACAGATCAATCCTTAAATCTCAATACTCATCCAATGGTAACTCGGAGCAAAAGTGGTATTTATAAACCTAAACCTTTCTTAATTGATTATACTGAGACTGAAGCTAAAGAAGCTTTAAAGCGTCCTCACTGGAGGAAAGCTATGGAAGAAGATTTTAAAGCTTTAAAACAAAATAACACATGGAGTCTCACTCAGAAACAGGAAAATCAAAAAATGTATTGTGTTGGCTGTAAA

Coding sequence (CDS)

ATGGTGGAGGTAAATCAAATAGAGGAGGAAGAGGAAACAGAAACAAACCTCGGTGTCAAATTTGTACAAAATTCGGTCACATTGTTGATCGATGCTACTTTCGATATGCTCCAAGAAATAATTCAGATGGCTGCCATGATTGCTGCTCCTGATCTGAATATTGATTCTAATTGGTACCCTGACTCTGGAGCTACAAACCACTTAACACACAGCTTGAGTAATCTATCCACTGGAGCTGATTATAATGGAGGAAATCAGATATATGCAGTAAATGGGTCAGGATCAGGGAACTGGCCAAATTCTTCTCCAAGGACACCTCTTTCATCCCACAAAGGTTATAATTGCCTTTCTCAAGATGGTCGCATTTACATATCCAGACATGTTCTATTTGATGAAGATTCCTTTTCCTATGCATCTTTTTCATCTCATTGTAAAACTTTATCAACAAAAAGTGTCTTGGCTACTCCAATCCAGTCCATAGTCCATAAGCCAACAATGAATCATAATGAAGAGAGGCAACACACTAATACATTCACTGATAATAATGATAATTTGAATTCTACTGCTGTGTATCCCTTAGAAACAGGAAGTCAGGAACAATATGGAGATGAGTTACCAAGAGGAGACCGTGAGAATAAGCAAATATCATCACAGACCCAAGATGACTCTACCAATACAGATCAATCCTTAAATCTCAATACTCATCCAATGGTAACTCGGAGCAAAAGTGGTATTTATAAACCTAAACCTTTCTTAATTGATTATACTGAGACTGAAGCTAAAGAAGCTTTAAAGCGTCCTCACTGGAGGAAAGCTATGGAAGAAGATTTTAAAGCTTTAAAACAAAATAACACATGGAGTCTCACTCAGAAACAGGAAAATCAAAAAATGTATTGTGTTGGCTGTAAA

Protein sequence

MVEVNQIEEEEETETNLGVKFVQNSVTLLIDATFDMLQEIIQMAAMIAAPDLNIDSNWYPDSGATNHLTHSLSNLSTGADYNGGNQIYAVNGSGSGNWPNSSPRTPLSSHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMNHNEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDELPRGDRENKQISSQTQDDSTNTDQSLNLNTHPMVTRSKSGIYKPKPFLIDYTETEAKEALKRPHWRKAMEEDFKALKQNNTWSLTQKQENQKMYCVGCK

Homology

[Close]

BLAST of CSPI06G19170 vs. ExPASy TrEMBL
Match: A0A5A7VFQ6 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00150 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.6e-52
Identity = 178/549 (32.42%), Postives = 221/549 (40.26%), Query Frame = 0


Query: 5   NQIEEEEETETNLGVKFVQNSVTLLIDATFDMLQ-EIIQMAAMIAAPDLNIDSNWYPDSG 64
           +Q  EEEE   N   K VQ    +LI A+FD+LQ +I QM+AM+A PDLNIDSNWYPDSG
Sbjct: 3   DQTGEEEEIVINHNAKSVQILDIVLIAASFDILQDQIHQMSAMVATPDLNIDSNWYPDSG 62

Query: 65  ATNHLTHSLSNLSTGADYNGGNQIYAVNGSG----------------------------- 124
           ATNHLTHSLSNLSTG++Y GGNQIYA NGSG                             
Sbjct: 63  ATNHLTHSLSNLSTGSEYGGGNQIYAANGSGLPITHYGSMSFNSSTLPFKSFTLNNLLHD 122

Query: 125 ------------------------------------------------------------ 184
                                                                       
Sbjct: 123 LDTGQVLLQGLLNDGLYKFTIQPSHKRLHHSDSNTKSVFNTVVPKSNTPLLDLWHRRLGH 182

Query: 185 ------------------------------------------------------------ 244
                                                                       
Sbjct: 183 PHLPTVKAVLNHIDHSSAFQKFKTCVEKSLGQSIKSLQTDGGTEFKPFKPFLDQHGIEHR 242

Query: 245 ------------------------------------------------------------ 304
                                                                       
Sbjct: 243 ITCPYTSKQNDIVERKHRHIMEMGLTLLSQATLPLSFWDEAFFTSVYLINLLPTPVLDNI 302

[Close]

BLAST of CSPI06G19170 vs. ExPASy TrEMBL
Match: A0A5D3D5W0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001310 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.0e-48
Identity = 109/201 (54.23%), Postives = 140/201 (69.65%), Query Frame = 0


Query: 108 SSHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMN 167
           +SHKGY CL+ DGR++ISRHVLFDE+SF YASF+SH     +K+VL+ P+ SI+    MN
Sbjct: 89  TSHKGYKCLASDGRLFISRHVLFDENSFPYASFASHSSIPKSKNVLSPPLHSIIPSSLMN 148

Query: 168 HNEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDELPRG--DRENKQISSQTQDDSTN 227
           HNE+R+HT+T +DN D LN T VYPLETG+QE   D+   G   +    +    Q DS  
Sbjct: 149 HNEDRRHTDTVSDNTDYLNPTIVYPLETGTQESSRDDGNSGGITQSPSPMEPPHQTDSGM 208

Query: 228 TDQSLNLNTHPMVTRSKSGIYKPKPFLIDYTETE---AKEALKRPHWRKAMEEDFKALKQ 287
             Q  + + HPM+T+SK  I+KPK FLIDYT+TE   AKEA   PHW+KAMEE+FKAL++
Sbjct: 209 NTQLQSTSIHPMITQSKHDIFKPKAFLIDYTQTETCNAKEAFNHPHWKKAMEEEFKALQK 268

Query: 288 NNTWSLTQKQENQKMYCVGCK 304
           N TWSL  +  NQK+  VGCK
Sbjct: 269 NGTWSLIPQNPNQKI--VGCK 287

[Close]

BLAST of CSPI06G19170 vs. ExPASy TrEMBL
Match: A0A5D3DJG8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001450 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-44
Identity = 107/185 (57.84%), Postives = 125/185 (67.57%), Query Frame = 0


Query: 108 SSHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMN 167
           SSHKGY CLSQDGR+YISRHV+  E+SF YASF SH  T S  +V   P QSI+H P +N
Sbjct: 89  SSHKGYKCLSQDGRLYISRHVICYENSFPYASFLSHSITSSPSTVFNPPFQSILHTPPLN 148

Query: 168 HNEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDELPRGDRENKQISSQTQDDSTNTD 227
           HN  R     FTDN D  N+  +YPLETG   Q  +E      +   I  QT++   N  
Sbjct: 149 HNAVRHEIEPFTDNAD--NTAIMYPLETGISAQTREESTSEGCDT--IPLQTEEPVNNAS 208

Query: 228 QSLNLNTHPMVTRSKSGIYKPKPFLIDYTE---TEAKEALKRPHWRKAMEEDFKALKQNN 287
            +  LNTHPMVTRSK+GI+KPK  LIDYTE   T AKEALK PHWRKAMEE+F ALK+NN
Sbjct: 209 PASTLNTHPMVTRSKNGIFKPKALLIDYTEHEPTNAKEALKHPHWRKAMEEEFLALKKNN 268

Query: 288 TWSLT 290
           TW+LT
Sbjct: 269 TWTLT 269

[Close]

BLAST of CSPI06G19170 vs. ExPASy TrEMBL
Match: A0A5A7SW14 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002970 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.6e-27
Identity = 75/143 (52.45%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 166 MNHNEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDELPRG--DRENKQISSQTQDDS 225
           MNHNE+R+HT T +DN D+LN T VY LE G+QE +  +   G   +    +  Q Q DS
Sbjct: 1   MNHNEDRRHTVTVSDNTDHLNLTIVYLLEIGTQESFMGDGNSGCITQSPSPMEPQHQTDS 60

Query: 226 TNTDQSLNLNTHPMVTRSKSGIYKPKPFLIDYTETE---AKEALKRPHWRKAMEEDFKAL 285
               Q  + + HPM+TRSK GI+KPK FLIDYT+TE    KEA   PHW+KAMEE+F+AL
Sbjct: 61  GMNTQLQSTSIHPMITRSKHGIFKPKAFLIDYTQTEPYNVKEAFNHPHWKKAMEEEFEAL 120

Query: 286 KQNNTWSLTQKQENQKMYCVGCK 304
           ++N+TWSLT +  NQK+  VGCK
Sbjct: 121 QKNDTWSLTSQNPNQKI--VGCK 141

[Close]

BLAST of CSPI06G19170 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.6e-27
Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 108 SSHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMN 167
           +SHKGY CL+ DGR++ISRHVLFDE+SF YASF+SH  T  +K VL+ P+ SI+    MN
Sbjct: 753 TSHKGYKCLASDGRLFISRHVLFDENSFPYASFASHSSTPKSKDVLSPPLHSIIPSSLMN 812

Query: 168 HNEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDELPRG--DRENKQISSQTQDDSTN 227
           HNE+R+HT+T +DN D+LN T VYPLETG+QE   D+   G   +    +    Q DS  
Sbjct: 813 HNEDRRHTDTVSDNTDHLNPTIVYPLETGTQESSRDDGNSGGITQSPSSMEPSHQTDSGM 872

Query: 228 TDQSLNLNTHPMVTRSK 243
             Q  + + HPM+T+SK
Sbjct: 873 NTQLQSTSIHPMITQSK 889

[Close]

BLAST of CSPI06G19170 vs. NCBI nr
Match: KAE8647228.1 (hypothetical protein Csa_018955 [Cucumis sativus])

HSP 1 Score: 364.0 bits (933), Expect = 1.3e-96
Identity = 193/238 (81.09%), Postives = 201/238 (84.45%), Query Frame = 0


Query: 43  MAAMIAAPDLNIDSNWYPDSGATNHLTHSLSNLSTGADYNGGNQIYAVNGSGSGNWPNSS 102
           MAAMIAAPD+NIDSNWYPDSGATNHLTHSLSNLSTGADYNGGNQIYAVNGSG        
Sbjct: 1   MAAMIAAPDMNIDSNWYPDSGATNHLTHSLSNLSTGADYNGGNQIYAVNGSGYS------ 60

Query: 103 PRTPLSSHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVH 162
                SSHKGYNCLSQDGRIYISRHVLFDE+SFSYASFSSHCKTLSTKSVLATPIQSIVH
Sbjct: 61  -----SSHKGYNCLSQDGRIYISRHVLFDENSFSYASFSSHCKTLSTKSVLATPIQSIVH 120

Query: 163 KPTMNHNEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDELPRGDRENKQISSQTQDD 222
           KPTMNHNEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDELPRGDRENKQISSQTQDD
Sbjct: 121 KPTMNHNEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDELPRGDRENKQISSQTQDD 180

Query: 223 STNTDQSLNLNTHPMVTRSKSGIYKPKPFLIDY---TETEAKEALKRPHWRKAMEEDF 278
           STNTDQSLNLNTHPMVTRSKSG    +  ++     +E +     K   W K  + DF
Sbjct: 181 STNTDQSLNLNTHPMVTRSKSGAKNEEATVVSIDTASENKKDREEKNSGWMKPGDVDF 227

[Close]

BLAST of CSPI06G19170 vs. NCBI nr
Match: KAA0067212.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 214.9 bits (546), Expect = 9.4e-52
Identity = 178/549 (32.42%), Postives = 221/549 (40.26%), Query Frame = 0


Query: 5   NQIEEEEETETNLGVKFVQNSVTLLIDATFDMLQ-EIIQMAAMIAAPDLNIDSNWYPDSG 64
           +Q  EEEE   N   K VQ    +LI A+FD+LQ +I QM+AM+A PDLNIDSNWYPDSG
Sbjct: 3   DQTGEEEEIVINHNAKSVQILDIVLIAASFDILQDQIHQMSAMVATPDLNIDSNWYPDSG 62

Query: 65  ATNHLTHSLSNLSTGADYNGGNQIYAVNGSG----------------------------- 124
           ATNHLTHSLSNLSTG++Y GGNQIYA NGSG                             
Sbjct: 63  ATNHLTHSLSNLSTGSEYGGGNQIYAANGSGLPITHYGSMSFNSSTLPFKSFTLNNLLHD 122

Query: 125 ------------------------------------------------------------ 184
                                                                       
Sbjct: 123 LDTGQVLLQGLLNDGLYKFTIQPSHKRLHHSDSNTKSVFNTVVPKSNTPLLDLWHRRLGH 182

Query: 185 ------------------------------------------------------------ 244
                                                                       
Sbjct: 183 PHLPTVKAVLNHIDHSSAFQKFKTCVEKSLGQSIKSLQTDGGTEFKPFKPFLDQHGIEHR 242

Query: 245 ------------------------------------------------------------ 304
                                                                       
Sbjct: 243 ITCPYTSKQNDIVERKHRHIMEMGLTLLSQATLPLSFWDEAFFTSVYLINLLPTPVLDNI 302

[Close]

BLAST of CSPI06G19170 vs. NCBI nr
Match: TYK18915.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 8.2e-48
Identity = 109/201 (54.23%), Postives = 140/201 (69.65%), Query Frame = 0


Query: 108 SSHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMN 167
           +SHKGY CL+ DGR++ISRHVLFDE+SF YASF+SH     +K+VL+ P+ SI+    MN
Sbjct: 89  TSHKGYKCLASDGRLFISRHVLFDENSFPYASFASHSSIPKSKNVLSPPLHSIIPSSLMN 148

Query: 168 HNEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDELPRG--DRENKQISSQTQDDSTN 227
           HNE+R+HT+T +DN D LN T VYPLETG+QE   D+   G   +    +    Q DS  
Sbjct: 149 HNEDRRHTDTVSDNTDYLNPTIVYPLETGTQESSRDDGNSGGITQSPSPMEPPHQTDSGM 208

Query: 228 TDQSLNLNTHPMVTRSKSGIYKPKPFLIDYTETE---AKEALKRPHWRKAMEEDFKALKQ 287
             Q  + + HPM+T+SK  I+KPK FLIDYT+TE   AKEA   PHW+KAMEE+FKAL++
Sbjct: 209 NTQLQSTSIHPMITQSKHDIFKPKAFLIDYTQTETCNAKEAFNHPHWKKAMEEEFKALQK 268

Query: 288 NNTWSLTQKQENQKMYCVGCK 304
           N TWSL  +  NQK+  VGCK
Sbjct: 269 NGTWSLIPQNPNQKI--VGCK 287

[Close]

BLAST of CSPI06G19170 vs. NCBI nr
Match: KAA0045110.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK23628.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 190.3 bits (482), Expect = 2.5e-44
Identity = 107/185 (57.84%), Postives = 125/185 (67.57%), Query Frame = 0


Query: 108 SSHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMN 167
           SSHKGY CLSQDGR+YISRHV+  E+SF YASF SH  T S  +V   P QSI+H P +N
Sbjct: 89  SSHKGYKCLSQDGRLYISRHVICYENSFPYASFLSHSITSSPSTVFNPPFQSILHTPPLN 148

Query: 168 HNEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDELPRGDRENKQISSQTQDDSTNTD 227
           HN  R     FTDN D  N+  +YPLETG   Q  +E      +   I  QT++   N  
Sbjct: 149 HNAVRHEIEPFTDNAD--NTAIMYPLETGISAQTREESTSEGCDT--IPLQTEEPVNNAS 208

Query: 228 QSLNLNTHPMVTRSKSGIYKPKPFLIDYTE---TEAKEALKRPHWRKAMEEDFKALKQNN 287
            +  LNTHPMVTRSK+GI+KPK  LIDYTE   T AKEALK PHWRKAMEE+F ALK+NN
Sbjct: 209 PASTLNTHPMVTRSKNGIFKPKALLIDYTEHEPTNAKEALKHPHWRKAMEEEFLALKKNN 268

Query: 288 TWSLT 290
           TW+LT
Sbjct: 269 TWTLT 269

[Close]

BLAST of CSPI06G19170 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-26
Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 108 SSHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMN 167
           +SHKGY CL+ DGR++ISRHVLFDE+SF YASF+SH  T  +K VL+ P+ SI+    MN
Sbjct: 753 TSHKGYKCLASDGRLFISRHVLFDENSFPYASFASHSSTPKSKDVLSPPLHSIIPSSLMN 812

Query: 168 HNEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDELPRG--DRENKQISSQTQDDSTN 227
           HNE+R+HT+T +DN D+LN T VYPLETG+QE   D+   G   +    +    Q DS  
Sbjct: 813 HNEDRRHTDTVSDNTDHLNPTIVYPLETGTQESSRDDGNSGGITQSPSSMEPSHQTDSGM 872

Query: 228 TDQSLNLNTHPMVTRSK 243
             Q  + + HPM+T+SK
Sbjct: 873 NTQLQSTSIHPMITQSK 889

The following BLAST results are available for this feature:

BLAST of CSPI06G19170 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G19170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFQ6	4.6e-52	32.42	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5D3D5W0	4.0e-48	54.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DJG8	1.2e-44	57.84	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SW14	6.6e-27	52.45	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7U233	6.6e-27	51.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

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BLAST of CSPI06G19170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647228.1	1.3e-96	81.09	hypothetical protein Csa_018955 [Cucumis sativus]	[more]
KAA0067212.1	9.4e-52	32.42	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]	[more]
TYK18915.1	8.2e-48	54.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0045110.1	2.5e-44	57.84	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0048297.1	1.4e-26	51.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

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BLAST of CSPI06G19170 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G19170.1	CSPI06G19170.1	mRNA