CSPI06G18710 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G18710
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 16971156 .. 16971490 (-)
RNA-Seq ExpressionCSPI06G18710
SyntenyCSPI06G18710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGGAAAACAGAAGAAGAAGAAGAAGAGGAAGAAGATGAAGATGAAGATGAAGATGAAGAAGAAGAAGAAGACGAGGGAAGAAAAAAAAAAAAAGATGGAATTTGGTGCACGTTCAACGGTCTTGATTTTGCAGGCTTTTACAACAATCATCCCCAATAGAGAGGATTGATTGTAAGAAACTTCCTGTTACGGAGAATTTGAAGAGTAAAGTGATTGGGCCAACATCTGGTTGGTTGCACAAATTCAATCCGACATCATTCATCCATATGCCAAAACCAAAACACAACTGCTTTTGTGGATCTCCCCTGCCTTCTGCGTTTTTGCCTTAA

mRNA sequence

ATGAAATGGAAAACAGAAGAAGAAGAAGAAGAGGAAGAAGATGAAGATGAAGATGAAGATGAAGAAGAAGAAGAAGACGAGGGAAGAAAAAAAAAAAAAGATGGAATTTGGCTTTTACAACAATCATCCCCAATAGAGAGGATTGATTGTAAGAAACTTCCTGTTACGGAGAATTTGAAGAGTAAAGTGATTGGGCCAACATCTGGTTGGTTGCACAAATTCAATCCGACATCATTCATCCATATGCCAAAACCAAAACACAACTGCTTTTGTGGATCTCCCCTGCCTTCTGCGTTTTTGCCTTAA

Coding sequence (CDS)

ATGAAATGGAAAACAGAAGAAGAAGAAGAAGAGGAAGAAGATGAAGATGAAGATGAAGATGAAGAAGAAGAAGAAGACGAGGGAAGAAAAAAAAAAAAAGATGGAATTTGGCTTTTACAACAATCATCCCCAATAGAGAGGATTGATTGTAAGAAACTTCCTGTTACGGAGAATTTGAAGAGTAAAGTGATTGGGCCAACATCTGGTTGGTTGCACAAATTCAATCCGACATCATTCATCCATATGCCAAAACCAAAACACAACTGCTTTTGTGGATCTCCCCTGCCTTCTGCGTTTTTGCCTTAA

Protein sequence

MKWKTEEEEEEEEDEDEDEDEEEEEDEGRKKKKDGIWLLQQSSPIERIDCKKLPVTENLKSKVIGPTSGWLHKFNPTSFIHMPKPKHNCFCGSPLPSAFLP*
Homology
[Close]
BLAST of CSPI06G18710 vs. ExPASy TrEMBL
Match: A0A0A0KDH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358070 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.4e-29
Identity = 72/98 (73.47%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 4   KTEEEEEEEEDEDEDEDEEEEEDEGRKKKKDGIWLLQQSSPIERIDCKKLPVTENLKSKV 63
           K ++++++++ + + + +++++    KK+KDGIWLLQQSSPIERIDCKKLPVTENLKSKV
Sbjct: 31  KQKKKKKKKKKKKKKKKKKKKKKREEKKRKDGIWLLQQSSPIERIDCKKLPVTENLKSKV 90

Query: 64  IGPTSGWLHKFNPTSFIHMPKPKHNCFCGSPLPSAFLP 102
           IGPTSGWLHKFNPTSFIHMPKPKHNCFCGSPLPSAFLP
Sbjct: 91  IGPTSGWLHKFNPTSFIHMPKPKHNCFCGSPLPSAFLP 128

[Close]
BLAST of CSPI06G18710 vs. NCBI nr
Match: KAE8647210.1 (hypothetical protein Csa_019061 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 3.2e-28
Identity = 71/96 (73.96%), Postives = 88/96 (91.67%), Query Frame = 0 

Query: 6   EEEEEEEEDEDEDEDEEEEEDEGRKKKKDGIWLLQQSSPIERIDCKKLPVTENLKSKVIG 65
           ++++++++ + + + +++++    KK+KDGIWLLQQSSPIERIDCKKLPVTENLKSKVIG
Sbjct: 31  KQKKKKKKKKMKMKMKKKKKTREEKKRKDGIWLLQQSSPIERIDCKKLPVTENLKSKVIG 90

Query: 66  PTSGWLHKFNPTSFIHMPKPKHNCFCGSPLPSAFLP 102
           PTSGWLHKFNPTSFIHMPKPKHNCFCGSPLPSAFLP
Sbjct: 91  PTSGWLHKFNPTSFIHMPKPKHNCFCGSPLPSAFLP 126

The following BLAST results are available for this feature:
BLAST of CSPI06G18710 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G18710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDH01.4e-2973.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358070 PE=4 SV=1[more]
BLAST of CSPI06G18710 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647210.13.2e-2873.96hypothetical protein Csa_019061 [Cucumis sativus][more]
BLAST of CSPI06G18710 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G18710.1CSPI06G18710.1mRNA