CSPI06G18440 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G18440
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein
LocationChr6: 16805493 .. 16808127 (+)
RNA-Seq ExpressionCSPI06G18440
SyntenyCSPI06G18440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGAATGAAACTTCCTTTAGATGTGTTGTTGAACTTCTCGGTGCTCTGTCATAGACAAATAGCTGTGTTTTTTTTTCATTTAGTTGCATATGTTTCCTTCATTCGACCTGTTGAAGTACGACGAGTTTCTGTTACCATATTTTTTCATCTGTTGAAGGAGGTTGAACTTCTCAACTTGTTGTATTTTCTGTTTGTGTGCATTATATATATACATCCCATGTTTAATTTTTTGTTGTTAAAGACCAATCTCATGTCCTGTACTATGCTTTGATGGTCACATATGCCTACTGTTTTCTTCTTCTTGCTCTCTGACCTATTTTGTCTCTCTTTGACCATAATACTGATTCATTTGTGTTGTCTACTCCATTTATGACATTAACAATAGCTGTACTTATTTGGTATGGTCTTTAATGGAGCATTGACTTGTGATTTTTACTCCTCCATACACACCTTGTGTGTAGTTGGCATGTGCGGTATCGTGTTTTCCCTTTTGCATATTCATGTCACAACATTTGATCGCCGTGCTACATTCCACTTCTTAACTTGTGTTTGACTTTGTGTGCGTGTCATGCCTTTCATATCACCGCATTTGATGACATTTTGTACGTGACGATTATTTCACATACGTATGAAGTTTGATTTTCTGATATTGAACGAACTTCCTTCCTCTAAGGCACAAAAAAAGAAGAAAAACTTTCGGTATATATTTTTGTTTATATTTTTTGGGTGCATGTAACTTTAACAGTTTGTTATTTGTCATACCTACATAATGGTAGGTCTAAAGTCAAAGGTATACGTCCACGTCCTTTTCCATATTTTGGTTTATAGCTTCTTACCATTCCCTTCACCGTTAGCAGGTTCTCCCTTCATAGTAGCTAAAAATTGGATCCAAACGAAATCGTCGTCGTTGTCTTTTCCTTCGCAATCACCCAACGACAGATGCTAATGATATTGGAGGCACTGTTGAATGATGACAAGAGGATAACTCAAATACTAGCCGACACTAGAAATAGGATTAGGCACCTAGCGTACTTTAGAATATAATGATACACGCGTCTGACCTTGTGTGTCAGCAAAGTACGTGGATGGACAGACGATGTTTCACAATTTTGTGTCATCTACTACGAACAAGGGCCGGTTTAGAATTGACGGAAGTCGTCGACGTTGAGGAGATGGTCGCTATCTTCCTTCATGTGCTGGCGCACGATGTGAAGAACCGCCAGATTCAAAGGAAGTTCGTACGGTCCGATGAGACAGTCTCACGACATTTCAACATTGTCTTGATGGTCATGCTTCGTCTGCATGACGAGTTATTGGCTCAACCACAGCCTATGACGAGCACATGCACAAATGTGAGGTGGCGGTCTTTTGAGGTTAGGGCTAAAATAACTTACGGTTTTTTTTTACTTGGAACTTATCCAAACTCTAAATCGTCGTTCGATATTCGCTGCAGAATTTCCTAGGGGCATTAGACGGCACATACATCAAAGTTAACGTGTCCGCAGCTGATTGACCAAGGTATCAAACCCCAAAGGGCGAAGTGGCAACGAATGTCCTTGGTGTTTGTGATACAAAGGGGGACTTTGTTTTCGTCTTAGTCGGCTAGGAAGGATTCGTTGCGGACTCGCGTATCCTACGAAATGCAATTTCCCGACTTAATGATCTGAAGGTTCCAAAAGGTGAGATCATATGTTTCCACTAACCCACGCTAAATAAGTTTGAAATCTGTTTTTTTCCTTTAATTAACGGCTCGACACTATGCAACCTCATATCTCCAGGGTTTTACTACTTGTGTGACGTGGGATACCCAAAGGCAGAGGGTTTTCTGGCGCCATATACAGGGCAAAAATATCATCTATAAGAGTGACGTGGTGTCGGGAATGCTCCAACAACACCGAAGGAGTTCTTCAACATGAAACATTCTTCTGCACCAAATGTCATTGAAAGAGCATTCGGGTTGTTGAAGGGTCGATGGGCAATACTACGAGGAAATTCCCACTACTTGGTTCAAGTCTAATGTCGAACTATTATGGCTTGTCTCCTCCATAATTTAATAAATCAGGAGATGGCGAACGCTAACATATTGGATGACAAAGACGAGGGTGACTCAACACATGCAACTTCTAGTGGTGACGAAATCAACTACATTGAGGTCTCAAACAAATGGACTCAATGGAGGGATGTCCTTGCAGAGTTGATGTTCAACGAATGACAGTTGTGTAACGACGAGTTGTTGTACGTCTTTGGGAAAAACCCTGCAACAAGGGCCCATGCAGAGACGTTTGCGGACATTGGGTCTAACGTGCCAGGACCCAACGTCGGTGTCTCCACGAAGGATGGTCTCGAGACGGAGTTCCCAGCTATGTGCAGTTCGAGGATGAACCTCTTGTCGGACGACATGATGATCGGACGATCTAATAGGTCCAGCGACTGTAGGTTGGGTTTTAGCGGTCAAAAAAGAAAGTGCGACATGCAGACGCTCGAGACTTACGACCATATTTGGGATGCTATGGACACTGCGAATGATCAACTTAGGGCCATTGCAGAAAGGCCAAATAGAGGTAGCCAGAAAGAAGACACAATGATGCAGGAGGTCATGATGCATATGTAGTCTATTCCGGACCTTAGTATGGA

mRNA sequence

GTTGAATGAAACTTCCTTTAGATGTGTTGTTGAACTTCTCGGTGCTCTGTCATAGACAAATAGCTGTGTTTTTTTTTCATTTAGTTGCATATGTTTCCTTCATTCGACCTGTTGAAGTACGACGAGTTTCTGTTACCATATTTTTTCATCTGTTGAAGGAGGTTGAACTTCTCAACTTGTTGTATTTTCTGTTTGTGTGCATTATATATATACATCCCATGTTTAATTTTTTGTTGTTAAAGACCAATCTCATGTCCTGTACTATGCTTTGATGGTCACATATGCCTACTGTTTTCTTCTTCTTGCTCTCTGACCTATTTTGTCTCTCTTTGACCATAATACTGATTCATTTGTGTTGTCTACTCCATTTATGACATTAACAATAGCTGTACTTATTTGGTATGGTCTTTAATGGAGCATTGACTTGTGATTTTTACTCCTCCATACACACCTTGTGTGTAGTTGGCATGTGCGGTATCGTGTTTTCCCTTTTGCATATTCATGTCACAACATTTGATCGCCGTGCTACATTCCACTTCTTAACTTGTGTTTGACTTTGTGTGCGTGTCATGCCTTTCATATCACCGCATTTGATGACATTTTGTACGTGACGATTATTTCACATACGTATGAAGTTTGATTTTCTGATATTGAACGAACTTCCTTCCTCTAAGGCACAAAAAAAGAAGAAAAACTTTCGGTATATATTTTTGTTTATATTTTTTGGGTGCATGTAACTTTAACAGTTTGTTATTTGTCATACCTACATAATGGTAGGTCTAAAGTCAAAGGTATACGTCCACGTCCTTTTCCATATTTTGGTTTATAGCTTCTTACCATTCCCTTCACCGTTAGCAGGTTCTCCCTTCATAGTAGCTAAAAATTGGATCCAAACGAAATCGTCGTCGTTGTCTTTTCCTTCGCAATCACCCAACGACAGATGCTAATGATATTGGAGGCACTGTTGAATGATGACAAGAGGATAACTCAAATACTAGCCGACACTAGAAATAGGATTAGGCACCTAGCGTACTTTAGAATATAATGATACACGCGTCTGACCTTGTGTGTCAGCAAAGTACGTGGATGGACAGACGATGTTTCACAATTTTGTGTCATCTACTACGAACAAGGGCCGGTTTAGAATTGACGGAAGTCGTCGACGTTGAGGAGATGGTCGCTATCTTCCTTCATGTGCTGGCGCACGATGTGAAGAACCGCCAGATTCAAAGGAAGTTCGTACGGTCCGATGAGACAGTCTCACGACATTTCAACATTGTCTTGATGGTCATGCTTCGTCTGCATGACGAGTTATTGGCTCAACCACAGCCTATGACGAGCACATGCACAAATGTGAGGTGGCGGTCTTTTGAGGTTAGGGCTAAAATAACTTACGGTTTTTTTTTACTTGGAACTTATCCAAACTCTAAATCGTCGTTCGATATTCGCTGCAGAATTTCCTAGGGGCATTAGACGGCACATACATCAAAGTTAACGTGTCCGCAGCTGATTGACCAAGGTATCAAACCCCAAAGGGCGAAGTGGCAACGAATGTCCTTGGTGTTTGTGATACAAAGGGGGACTTTGTTTTCGTCTTAGTCGGCTAGGAAGGATTCGTTGCGGACTCGCGTATCCTACGAAATGCAATTTCCCGACTTAATGATCTGAAGGTTCCAAAAGGTGAGATCATATGTTTCCACTAACCCACGCTAAATAAGTTTGAAATCTGTTTTTTTCCTTTAATTAACGGCTCGACACTATGCAACCTCATATCTCCAGGGTTTTACTACTTGTGTGACGTGGGATACCCAAAGGCAGAGGGTTTTCTGGCGCCATATACAGGGCAAAAATATCATCTATAAGAGTGACGTGGTGTCGGGAATGCTCCAACAACACCGAAGGAGTTCTTCAACATGAAACATTCTTCTGCACCAAATGTCATTGAAAGAGCATTCGGGTTGTTGAAGGGTCGATGGGCAATACTACGAGGAAATTCCCACTACTTGGTTCAAGTCTAATGTCGAACTATTATGGCTTGTCTCCTCCATAATTTAATAAATCAGGAGATGGCGAACGCTAACATATTGGATGACAAAGACGAGGGTGACTCAACACATGCAACTTCTAGTGGTGACGAAATCAACTACATTGAGGTCTCAAACAAATGGACTCAATGGAGGGATGTCCTTGCAGAGTTGATGTTCAACGAATGACAGTTGTGTAACGACGAGTTGTTGTACGTCTTTGGGAAAAACCCTGCAACAAGGGCCCATGCAGAGACGTTTGCGGACATTGGGTCTAACGTGCCAGGACCCAACGTCGGTGTCTCCACGAAGGATGGTCTCGAGACGGAGTTCCCAGCTATGTGCAGTTCGAGGATGAACCTCTTGTCGGACGACATGATGATCGGACGATCTAATAGGTCCAGCGACTGTAGGTTGGGTTTTAGCGGTCAAAAAAGAAAGTGCGACATGCAGACGCTCGAGACTTACGACCATATTTGGGATGCTATGGACACTGCGAATGATCAACTTAGGGCCATTGCAGAAAGGCCAAATAGAGGTAGCCAGAAAGAAGACACAATGATGCAGGAGGTCATGATGCATATGTAGTCTATTCCGGACCTTAGTATGGA

Coding sequence (CDS)

ATGATACACGCGTCTGACCTTGTGTGTCAGCAAAGTACGTGGATGGACAGACGATGTTTCACAATTTTGTGTCATCTACTACGAACAAGGGCCGGTTTAGAATTGACGGAAGTCGTCGACGTTGAGGAGATGGTCGCTATCTTCCTTCATGTGCTGGCGCACGATGTGAAGAACCGCCAGATTCAAAGGAAGTTCGTACGGTCCGATGAGACAGTCTCACGACATTTCAACATTGTCTTGATGGTCATGCTTCGTCTGCATGACGAGTTATTGGCTCAACCACAGCCTATGACGAGCACATGCACAAATGTGAGGTGGCGGTCTTTTGAGGTTAGGGCTAAAATAACTTACGGTTTTTTTTTACTTGGAACTTATCCAAACTCTAAATCGTCGTTCGATATTCGCTGCAGAATTTCCTAG

Protein sequence

MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTNVRWRSFEVRAKITYGFFLLGTYPNSKSSFDIRCRIS*
Homology
[Close]
BLAST of CSPI06G18440 vs. ExPASy TrEMBL
Match: A0A5D3BZB1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00580 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.4e-40
Identity = 86/131 (65.65%), Postives = 103/131 (78.63%), Query Frame = 0 

Query: 1   MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQ 60
           MIH SDLVC+QST MDRRCFTILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR 
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFTILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTNVRWRSFEVRAKITYGFF 120
           IQR+F+RS ET+SRHFN+VL+ ++RLH+ELL +PQP+ + CT+ RWR FE       G +
Sbjct: 113 IQREFMRSSETISRHFNMVLLAVIRLHEELLKKPQPVPNDCTDQRWRWFENCLDALNGTY 172

Query: 121 LLGTYPNSKSS 132
           +    P S  S
Sbjct: 173 IKVNVPASDRS 183

[Close]
BLAST of CSPI06G18440 vs. ExPASy TrEMBL
Match: A0A5A7TXV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27961G00010 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.4e-40
Identity = 83/111 (74.77%), Postives = 98/111 (88.29%), Query Frame = 0 

Query: 1   MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQ 60
           MIH SDLVC+QST MDRRCFTILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR 
Sbjct: 31  MIHGSDLVCRQSTRMDRRCFTILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 90

Query: 61  IQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTNVRWRSFEV 112
           IQR+F+RS ET+SRHFN+VL+ ++RLH+ELL +PQP+ + CT+ RWR FEV
Sbjct: 91  IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFEV 141

[Close]
BLAST of CSPI06G18440 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 9.2e-40
Identity = 82/110 (74.55%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 1   MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQ 60
           MIH SDLVC+QST MDRRCF ILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR 
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTNVRWRSFE 111
           IQR+F+RS ET+SRHFN+VL+ ++RLHDELL +PQP+ + CT+ RWR FE
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]
BLAST of CSPI06G18440 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 9.2e-40
Identity = 82/110 (74.55%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 1   MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQ 60
           MIH SDLVC+QST MDRRCF ILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR 
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTNVRWRSFE 111
           IQR+F+RS ET+SRHFN+VL+ ++RLHDELL +PQP+ + CT+ RWR FE
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]
BLAST of CSPI06G18440 vs. ExPASy TrEMBL
Match: A0A5A7VG29 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3818G00010 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.6e-39
Identity = 81/110 (73.64%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 1   MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQ 60
           MIH SDLVC+QST MDRRCF ILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR 
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTNVRWRSFE 111
           IQR+F+RS ET+SRHFN+VL+ ++RLH+ELL +PQP+ + CT+ RWR FE
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRCFE 162

[Close]
BLAST of CSPI06G18440 vs. NCBI nr
Match: KAA0047074.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05083.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 2.9e-40
Identity = 86/131 (65.65%), Postives = 103/131 (78.63%), Query Frame = 0 

Query: 1   MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQ 60
           MIH SDLVC+QST MDRRCFTILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR 
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFTILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTNVRWRSFEVRAKITYGFF 120
           IQR+F+RS ET+SRHFN+VL+ ++RLH+ELL +PQP+ + CT+ RWR FE       G +
Sbjct: 113 IQREFMRSSETISRHFNMVLLAVIRLHEELLKKPQPVPNDCTDQRWRWFENCLDALNGTY 172

Query: 121 LLGTYPNSKSS 132
           +    P S  S
Sbjct: 173 IKVNVPASDRS 183

[Close]
BLAST of CSPI06G18440 vs. NCBI nr
Match: KAA0046717.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 5.0e-40
Identity = 83/111 (74.77%), Postives = 98/111 (88.29%), Query Frame = 0 

Query: 1   MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQ 60
           MIH SDLVC+QST MDRRCFTILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR 
Sbjct: 31  MIHGSDLVCRQSTRMDRRCFTILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 90

Query: 61  IQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTNVRWRSFEV 112
           IQR+F+RS ET+SRHFN+VL+ ++RLH+ELL +PQP+ + CT+ RWR FEV
Sbjct: 91  IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFEV 141

[Close]
BLAST of CSPI06G18440 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.9e-39
Identity = 82/110 (74.55%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 1   MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQ 60
           MIH SDLVC+QST MDRRCF ILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR 
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTNVRWRSFE 111
           IQR+F+RS ET+SRHFN+VL+ ++RLHDELL +PQP+ + CT+ RWR FE
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]
BLAST of CSPI06G18440 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.9e-39
Identity = 82/110 (74.55%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 1   MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQ 60
           MIH SDLVC+QST MDRRCF ILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR 
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTNVRWRSFE 111
           IQR+F+RS ET+SRHFN+VL+ ++RLHDELL +PQP+ + CT+ RWR FE
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]
BLAST of CSPI06G18440 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 3.2e-39
Identity = 81/110 (73.64%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 1   MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQ 60
           MIH SDLVC+QST MDRRCF ILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR 
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTNVRWRSFE 111
           IQR+F+RS ET+SRHFN+VL+ ++RLH+ELL +PQP+ + CT+ RWR FE
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRCFE 162

[Close]
BLAST of CSPI06G18440 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-11
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 0 

Query: 9   CQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRS 68
           C ++  MD+  F  LC LL+TR  L  T  + +E  +AIFL ++ H+++ R +Q  F  S
Sbjct: 42  CFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYS 101

Query: 69  DETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTN 104
            ET+SRHFN VL  ++ +  +   QP   + T  N
Sbjct: 102 GETISRHFNNVLNAVIAISKDFF-QPNSNSDTLEN 135

[Close]
BLAST of CSPI06G18440 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 5.4e-08
Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 0 

Query: 9   CQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRS 68
           C Q   M   CFT LC++L+T   L+ T  + +EE VA+FL +  H+   R +  +F R+
Sbjct: 66  CLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRN 125

Query: 69  DETVSRHFNIVL 81
            ETV R F  VL
Sbjct: 126 QETVQRKFREVL 137

[Close]
BLAST of CSPI06G18440 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 0 

Query: 2   IHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQI 61
           I+++++ CQ    M    FT LC +L  + GL+ +  + ++E VAIFL + A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 62  QRKFVRSDETVSRHFNIVLMVMLRLHDELL 92
             +F  + ET+ R F+ VL  M RL  E +
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYI 106

The following BLAST results are available for this feature:
BLAST of CSPI06G18440 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G18440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BZB11.4e-4065.65Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TXV12.4e-4074.77Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TXW19.2e-4074.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SWD89.2e-4074.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VG291.6e-3973.64Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CSPI06G18440 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047074.12.9e-4065.65retrotransposon protein [Cucumis melo var. makuwa] >TYK05083.1 retrotransposon p... [more]
KAA0046717.15.0e-4074.77retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0046727.11.9e-3974.55retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon... [more]
KAA0034843.11.9e-3974.55retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065286.13.2e-3973.64retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of CSPI06G18440 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G41980.15.2e-1136.84CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT1G43722.15.4e-0840.28unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G28730.11.2e-0734.44unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 1..110
NoneNo IPR availablePANTHERPTHR22930:SF216OS11G0577650 PROTEINcoord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G18440.1CSPI06G18440.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding