CSPI06G18410 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G18410
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationChr6: 16786091 .. 16787781 (+)
RNA-Seq ExpressionCSPI06G18410
SyntenyCSPI06G18410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTATCTCAGTATACTTCTCAATCACTTGGAGAAAAAAAACTTGATAAAAGGAGTTAGTTTCAATGGAAAACATAACCTTACTCATCTCCTCTTTGCTGCTGATATCCTTCTTTTTATGGAGGACGATGAAGAAACCATTAATAATATGAGGAATGCCCTTCGGCTTTTTGAATTGGCCTCAGGTCTCAACATCAACCTCAACAAATCCACGATCTCTCCTATCAACATTGATACACAGAGAACAAATTATGTGGCGGCTAAATGGGGCTTCTCAGTTAATTTCCTACCTATCCAATATTTGGGAGTGCCTTTGGGCGGTAAACCGAATCCTAGACATTTTTGGTCTGAAACAACGGAAAAACTCCAAAGAAAAATCAACAACTGGAAATATGCTTCTCTTTCCAAAGGTGGCAAGATAACTCTCATTAAAGCTACATTAGCTAGCTTTCCTAATTATCACATTTTGGTTTTCAAGCCCCCCAAATATGTCTACAAAGATATTAAAACAATATGGAGAAATTTCCTCTGGAGAAACACCTTTGATAAGAAAAACATCAATCTCATCAAATGGTCAACGATGTTGTCTCCTATCAACAAAGGTGGCCTGGGCATTAACAACATTCAAAGTACAAATTTCGCTCTACTAAGCAAGTGGATTTGGAGATTTTATGAAGAAAAAATTCTCTACGGAAACGCATAATCACTGCTAAATATGAACAATCATACTTGGGTGAACTTCCAATCAAAAGCAAATATAGCAGCTCCAAAGCACCTTGGATGTCTATCATTAAAGGAGCTGACTGGGTCCTTCCTCAAATCAAATGGTCTATTAAAAGGGGAGACTCCCTCTCGTTCTGGCACAGCCGATGGCATGAACTTAGTCCATTCGCATAGACCAACCTAAGATTATTTGCTCTTTCTACCAGGAAAGGAGACTCCATTGCAAACATGTGGAATGCAGAAAAAGCCGACAGGGACCTCTACCCTCAAAAACCGTTAAGAAGTGTCAAGGAAGTTCTTTGGGAATATATGAAAGCCTCCCTCCCTCCCTTGCCTGATTCAGGAGTTGACAATCATCGTTGGATTTTGAACAACAATGGCAGCTTCACTGTGGCTTCCATCAAACTTGCAAGACCTCTAAACAACCAAGACGAGACCAACGAAGATGATGGGAAAATCTATAACAACTTATGGAAATCTACCATCCCCAAAAGATGCAAATTCTTCGTATGGACTCTCCTACATGAGTGTATCAATACAATGGATATGCTGCAGAGAAGACTTTCAACGTGAACTATAAAGCCCTCTTGGTGCATCCTCTGCAAAGCTGCTGAGGAAGACAGACAACATCTTTTCGCCCATTGCCCCTTCACAACATTGCTCTGGAAGAAAGTTGAAGTTATCCTGGGCAAACCCCTGCTCTTTCCAAATTCCACTGCCTTATGCAAAGATCTCTTCAAAACAAAAGGTAAAACAAAAAAGCAAATCATCAATCAACACCTGGTGGCTACTACCCTTTGGAACATTTGGAATGAAAATAACAGAAGGATTTTTAAGGAGGAAGAAAAAAAAGTTGATTCCGTATGGGAAGACATACAAGCCATAACGGGTTTTTGGACAAGCCGATCTTCCCTCTTCAAAAATTACTCGACTAGCTCTATTCCATTAAACTTAAATGCTTTTTAG

mRNA sequence

ATGGATTATCTCAGTATACTTCTCAATCACTTGGAGAAAAAAAACTTGATAAAAGGAGTTAGTTTCAATGGAAAACATAACCTTACTCATCTCCTCTTTGCTGCTGATATCCTTCTTTTTATGGAGGACGATGAAGAAACCATTAATAATATGAGGAATGCCCTTCGGCTTTTTGAATTGGCCTCAGGTCTCAACATCAACCTCAACAAATCCACGATCTCTCCTATCAACATTGATACACAGAGAACAAATTATGTGGCGGCTAAATGGGGCTTCTCAGTTAATTTCCTACCTATCCAATATTTGGGAGTGCCTTTGGGCGGTAAACCGAATCCTAGACATTTTTGGTCTGAAACAACGGAAAAACTCCAAAGAAAAATCAACAACTGGAAATATGCTTCTCTTTCCAAAGGTGGCAAGATAACTCTCATTAAAGCTACATTAGCTAGCTTTCCTAATTATCACATTTTGGTTTTCAAGCCCCCCAAATATGTCTACAAAGATATTAAAACAATATGGAGAAATTTCCTCTGGAGAAACACCTTTGATAAGAAAAACATCAATCTCATCAAATGGTCAACGATGTTGTCTCCTATCAACAAAGGTGGCCTGGGCATTAACAACATTCAAAGTACAAATTTCGCTCTACTAAGCAAGAAAGGAGACTCCATTGCAAACATGTGGAATGCAGAAAAAGCCGACAGGGACCTCTACCCTCAAAAACCGTTAAGAAGTGTCAAGGAAGTTCTTTGGGAATATATGAAAGCCTCCCTCCCTCCCTTGCCTGATTCAGGAGTTGACAATCATCGTTGGATTTTGAACAACAATGGCAGCTTCACTGTGGCTTCCATCAAACTTGCAAGACCTCTAAACAACCAAGACGAGACCAACGAAGATGATGGGAAAATCTATAACAACTTATGGAAATCTACCATCCCCAAAAGATGCAAATTCTTCCCCTCTTGGTGCATCCTCTGCAAAGCTGCTGAGGAAGACAGACAACATCTTTTCGCCCATTGCCCCTTCACAACATTGCTCTGGAAGAAAGTTGAAGTTATCCTGGGCAAACCCCTGCTCTTTCCAAATTCCACTGCCTTATGCAAAGATCTCTTCAAAACAAAAGGTAAAACAAAAAAGCAAATCATCAATCAACACCTGGTGGCTACTACCCTTTGGAACATTTGGAATGAAAATAACAGAAGGATTTTTAAGGAGGAAGAAAAAAAAGTTGATTCCGTATGGGAAGACATACAAGCCATAACGGGTTTTTGGACAAGCCGATCTTCCCTCTTCAAAAATTACTCGACTAGCTCTATTCCATTAAACTTAAATGCTTTTTAG

Coding sequence (CDS)

ATGGATTATCTCAGTATACTTCTCAATCACTTGGAGAAAAAAAACTTGATAAAAGGAGTTAGTTTCAATGGAAAACATAACCTTACTCATCTCCTCTTTGCTGCTGATATCCTTCTTTTTATGGAGGACGATGAAGAAACCATTAATAATATGAGGAATGCCCTTCGGCTTTTTGAATTGGCCTCAGGTCTCAACATCAACCTCAACAAATCCACGATCTCTCCTATCAACATTGATACACAGAGAACAAATTATGTGGCGGCTAAATGGGGCTTCTCAGTTAATTTCCTACCTATCCAATATTTGGGAGTGCCTTTGGGCGGTAAACCGAATCCTAGACATTTTTGGTCTGAAACAACGGAAAAACTCCAAAGAAAAATCAACAACTGGAAATATGCTTCTCTTTCCAAAGGTGGCAAGATAACTCTCATTAAAGCTACATTAGCTAGCTTTCCTAATTATCACATTTTGGTTTTCAAGCCCCCCAAATATGTCTACAAAGATATTAAAACAATATGGAGAAATTTCCTCTGGAGAAACACCTTTGATAAGAAAAACATCAATCTCATCAAATGGTCAACGATGTTGTCTCCTATCAACAAAGGTGGCCTGGGCATTAACAACATTCAAAGTACAAATTTCGCTCTACTAAGCAAGAAAGGAGACTCCATTGCAAACATGTGGAATGCAGAAAAAGCCGACAGGGACCTCTACCCTCAAAAACCGTTAAGAAGTGTCAAGGAAGTTCTTTGGGAATATATGAAAGCCTCCCTCCCTCCCTTGCCTGATTCAGGAGTTGACAATCATCGTTGGATTTTGAACAACAATGGCAGCTTCACTGTGGCTTCCATCAAACTTGCAAGACCTCTAAACAACCAAGACGAGACCAACGAAGATGATGGGAAAATCTATAACAACTTATGGAAATCTACCATCCCCAAAAGATGCAAATTCTTCCCCTCTTGGTGCATCCTCTGCAAAGCTGCTGAGGAAGACAGACAACATCTTTTCGCCCATTGCCCCTTCACAACATTGCTCTGGAAGAAAGTTGAAGTTATCCTGGGCAAACCCCTGCTCTTTCCAAATTCCACTGCCTTATGCAAAGATCTCTTCAAAACAAAAGGTAAAACAAAAAAGCAAATCATCAATCAACACCTGGTGGCTACTACCCTTTGGAACATTTGGAATGAAAATAACAGAAGGATTTTTAAGGAGGAAGAAAAAAAAGTTGATTCCGTATGGGAAGACATACAAGCCATAACGGGTTTTTGGACAAGCCGATCTTCCCTCTTCAAAAATTACTCGACTAGCTCTATTCCATTAAACTTAAATGCTTTTTAG

Protein sequence

MDYLSILLNHLEKKNLIKGVSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFELASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETTEKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRNTFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSKKGDSIANMWNAEKADRDLYPQKPLRSVKEVLWEYMKASLPPLPDSGVDNHRWILNNNGSFTVASIKLARPLNNQDETNEDDGKIYNNLWKSTIPKRCKFFPSWCILCKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQIINQHLVATTLWNIWNENNRRIFKEEEKKVDSVWEDIQAITGFWTSRSSLFKNYSTSSIPLNLNAF*
Homology
BLAST of CSPI06G18410 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.0e-14
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = 0

Query: 116 WSETTEKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRN 175
           + E  E++  +++ W+  +LS  G++TL KA L+S P + +     P+ +   +  + R 
Sbjct: 13  FGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRT 72

Query: 176 FLWRNTFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSKKG 222
           FLW +T +KK  +L+KWS + SP  +GGLG+   +S N AL+SK G
Sbjct: 73  FLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVG 118

BLAST of CSPI06G18410 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-08
Identity = 49/206 (23.79%), Postives = 96/206 (46.60%), Query Frame = 0

Query: 4   LSILLNHLEKKNLIKGVSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFELASG 63
           L +L   + ++  IKG+   GK  +   LFA D+++++E+   +  N+   +  F   SG
Sbjct: 672 LEVLARAIRQEKEIKGIQL-GKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSG 731

Query: 64  LNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETTEKL 123
             IN+ KS     N + Q  + +  +  F++    I+YLG+ L    + +  + E  + L
Sbjct: 732 YKINVQKSQAFLYNNNRQTESQIMGELPFTIASKRIKYLGIQL--TRDVKDLFKENYKPL 791

Query: 124 QRKI----NNWKYASLSKGGKITLIKATLAS--FPNYHILVFKPPKYVYKDIKTIWRNFL 183
            ++I    N WK    S  G+I ++K  +       ++ +  K P   + +++     F+
Sbjct: 792 LKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFI 851

Query: 184 WRNTFDKKNINLIKWSTMLSPINKGG 204
           W    ++K   + K  ++LS  NK G
Sbjct: 852 W----NQKRARIAK--SILSQKNKAG 868

BLAST of CSPI06G18410 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 7.0e-06
Identity = 41/192 (21.35%), Postives = 84/192 (43.75%), Query Frame = 0

Query: 4   LSILLNHLEKKNLIKGVSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFELASG 63
           L +L   + ++  IKG+   GK  +   L A D+++++ D + +   + N +  F    G
Sbjct: 679 LEVLARAIRQQKEIKGIQI-GKEEVKISLLADDMIVYISDPKNSTRELLNLINSFGEVVG 738

Query: 64  LNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRH--FWSETTE 123
             IN NKS       + Q    +     FS+    I+YLGV L  +    +   +    +
Sbjct: 739 YKINSNKSMAFLYTKNKQAEKEIRETTPFSIVTNNIKYLGVTLTKEVKDLYDKNFKSLKK 798

Query: 124 KLQRKINNWKYASLSKGGKITLIKATL--ASFPNYHILVFKPPKYVYKDIKTIWRNFLWR 183
           +++  +  WK    S  G+I ++K  +   +   ++ +  K P   + +++     F+W 
Sbjct: 799 EIKEDLRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFVWN 858

Query: 184 NTFDKKNINLIK 192
           N   +   +L+K
Sbjct: 859 NKKPRIAKSLLK 869

BLAST of CSPI06G18410 vs. ExPASy TrEMBL
Match: A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 2.2e-111
Identity = 229/564 (40.60%), Postives = 299/564 (53.01%), Query Frame = 0

Query: 1    MDYLSILLNHLEKKNLIKGVSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 60
            MDY+S LLN + +K  IKGV   G  NLTHLLFA DILLF+EDDE +I N++N + LF+L
Sbjct: 558  MDYISRLLNSVGEK--IKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQL 617

Query: 61   ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 120
            ASGL+INLNKSTISPIN+D  RT  +A++WG S  FLPI YLGVPLGGK   + FW    
Sbjct: 618  ASGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQTTKAFWKNVE 677

Query: 121  EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 180
            EK+ +K+ +WKY+ LSKGGKITLIK++LAS P Y + +FK P    K+I+  WRNFLW+N
Sbjct: 678  EKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKN 737

Query: 181  TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSK--------------------- 240
              +   ++L+ W+ + S   KGGLGI+ ++ TNFALL+K                     
Sbjct: 738  PPETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKY 797

Query: 241  ----KGD----------------------------------------------------- 300
                KGD                                                     
Sbjct: 798  RSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWHGHWHQNSPLSS 857

Query: 301  --------------SIANMWNAEKADRDLYPQKPLRSVKEVLWEYMKASL-PPLPDSGVD 360
                          SI +MWN    D DL P++ LR  +  LW  +K S+     ++G D
Sbjct: 858  HYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWELPLWAELKNSINASFCENGKD 917

Query: 361  NHRWILNNNGSFTVASIKLARPLNNQDETNEDDGKIYNNLWKSTIPKRCKFF-------- 420
            +  W LN+NG +TVAS+K A     Q   +      + NLWK++IPK+C FF        
Sbjct: 918  SPMWALNSNGLYTVASVKKALQQPEQSLLDLQSQNTFKNLWKTSIPKKCIFFIWTLLYDS 977

Query: 421  -----------------PSWCILCKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPN 447
                             PSWC++CK  +EDR HLF  CP    +W+ +   L   +   +
Sbjct: 978  VNTAEQLMKRLPKLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRTISSHLNSNVNCLS 1037

BLAST of CSPI06G18410 vs. ExPASy TrEMBL
Match: A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 2.9e-111
Identity = 229/564 (40.60%), Postives = 299/564 (53.01%), Query Frame = 0

Query: 1    MDYLSILLNHLEKKNLIKGVSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 60
            MDY+S LLN + +K  IKGV   G  NLTHLLFA DILLF+EDDE +I N++N + LF+L
Sbjct: 495  MDYMSRLLNSVGEK--IKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQL 554

Query: 61   ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 120
            ASGL+INLNKSTISPIN+D  RT  +A++WG S  FLPI YLGVPLGGK   + FW    
Sbjct: 555  ASGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVE 614

Query: 121  EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 180
            EK+ +K+ +WKY+ LSKGGKITLIK++LAS P Y + +FK P    K+I+  WRNFLW+N
Sbjct: 615  EKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKN 674

Query: 181  TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSK--------------------- 240
              +   ++L+ W+ + S   KGGLGI+ ++ TNFALL+K                     
Sbjct: 675  PPETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKY 734

Query: 241  ----KGD----------------------------------------------------- 300
                KGD                                                     
Sbjct: 735  RSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSS 794

Query: 301  --------------SIANMWNAEKADRDLYPQKPLRSVKEVLWEYMKASL-PPLPDSGVD 360
                          SI +MWN    D DL P++ LR  +  LW  +K SL     ++G D
Sbjct: 795  HYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWEHPLWAELKNSLNASFCENGND 854

Query: 361  NHRWILNNNGSFTVASIKLARPLNNQDETNEDDGKIYNNLWKSTIPKRCKFF-------- 420
            +  W LN+NG +TVAS+K       Q+  +      + NLWK++IPK+C FF        
Sbjct: 855  SPMWTLNSNGLYTVASVKKTLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFIWTLLYDS 914

Query: 421  -----------------PSWCILCKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPN 447
                             PSWC++CK  +EDR HLF  CP    +W+ +   L   +   +
Sbjct: 915  VNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSISSHLSSNVNCLS 974

BLAST of CSPI06G18410 vs. ExPASy TrEMBL
Match: A0A1S4E2K5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC107991687 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 3.7e-111
Identity = 229/564 (40.60%), Postives = 299/564 (53.01%), Query Frame = 0

Query: 1    MDYLSILLNHLEKKNLIKGVSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 60
            MDY+S LLN + +K  IKGV   G  NLTHLLFA DILLF+EDDE +I N++N + LF+L
Sbjct: 495  MDYMSRLLNSVGEK--IKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQL 554

Query: 61   ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 120
            ASGL+INLNKSTISPIN+D  RT  +A++WG S  FLPI YLGVPLGGK   + FW    
Sbjct: 555  ASGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVE 614

Query: 121  EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 180
            EK+ +K+ +WKY+ LSKGGKITLIK++LAS P Y + +FK P    K+I+  WRNFLW+N
Sbjct: 615  EKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNFLWKN 674

Query: 181  TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSK--------------------- 240
              +   ++L+ W+ + S   KGGLGI+ ++ TNFALL+K                     
Sbjct: 675  PPETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKY 734

Query: 241  ----KGD----------------------------------------------------- 300
                KGD                                                     
Sbjct: 735  RSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSS 794

Query: 301  --------------SIANMWNAEKADRDLYPQKPLRSVKEVLWEYMKASL-PPLPDSGVD 360
                          SI +MWN    D DL P++ LR  +  LW  +K SL     ++G D
Sbjct: 795  HYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWEHPLWAELKNSLNASFCENGND 854

Query: 361  NHRWILNNNGSFTVASIKLARPLNNQDETNEDDGKIYNNLWKSTIPKRCKFF-------- 420
            +  W LN+NG +TVAS+K       Q+  +      + NLWK++IPK+C FF        
Sbjct: 855  SPMWTLNSNGLYTVASVKKTLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFIWTLLYDS 914

Query: 421  -----------------PSWCILCKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPN 447
                             PSWC++CK  +EDR HLF  CP    +W+ +   L   +   +
Sbjct: 915  VNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSISSHLSSNVNCLS 974

BLAST of CSPI06G18410 vs. ExPASy TrEMBL
Match: A0A5A7TES3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00040 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 7.3e-107
Identity = 218/541 (40.30%), Postives = 286/541 (52.87%), Query Frame = 0

Query: 24  GKHNLTHLLFAADILLFMEDDEETINNMRNALRLFELASGLNINLNKSTISPINIDTQRT 83
           G  NLTHLLFA DILLF+EDDE +I N++N + LF+LASGL+INLNKSTISPIN+D  RT
Sbjct: 3   GNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISPINVDAART 62

Query: 84  NYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETTEKLQRKINNWKYASLSKGGKITL 143
             +A++WG S  FLPI YLGVPLGGK   + FW    EK+ +K+ +WKY+ LSKGGKITL
Sbjct: 63  EQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEKINKKLASWKYSMLSKGGKITL 122

Query: 144 IKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRNTFDKKNINLIKWSTMLSPINKGG 203
           IK++LAS P Y + +FK P    K+I+  WRNFLW+N  +   ++L+ W+ + SP  +GG
Sbjct: 123 IKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGG 182

Query: 204 LGINNIQSTNFALLSK-------------------------KGD---------------- 263
           LGI+ ++ TNFALL+K                         KGD                
Sbjct: 183 LGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFS 242

Query: 264 ---------------------------------------------------SIANMWNAE 323
                                                              SI +MWN  
Sbjct: 243 ICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSFHYPRLFALSTNKDSSIRDMWNNT 302

Query: 324 KADRDLYPQKPLRSVKEVLWEYMKASL-PPLPDSGVDNHRWILNNNGSFTVASIKLARPL 383
             D DL P++ LR  +  LW  +K SL     ++G D+  W LN+NG +TVAS+K A   
Sbjct: 303 LMDWDLNPRRQLREWEYPLWAELKNSLNASFCENGKDSPTWTLNSNGLYTVASVKKALQQ 362

Query: 384 NNQDETNEDDGKIYNNLWKSTIPKRCKFF-------------------------PSWCIL 443
            +Q   +      + NLWK++IPK+C FF                         PSWC++
Sbjct: 363 PDQSLLDLQSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVM 422

Query: 444 CKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQIINQH 447
           CK  +EDR HLF  CP    +W+ +   L   +   +   LC  +   K KTKK +I  +
Sbjct: 423 CKRNDEDRIHLFILCPIAKSIWRLISSHLNSNVNCLSPKDLCITMCSWKQKTKKNVILYN 482

BLAST of CSPI06G18410 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 7.6e-104
Identity = 216/565 (38.23%), Postives = 294/565 (52.04%), Query Frame = 0

Query: 1    MDYLSILLNHLEKKNLIKGVSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 60
            MDYLS LL +L +K  I GV+F    NLTH+LFA DIL+F+ED E+ ++N++  L LFE 
Sbjct: 473  MDYLSHLLINLAEKGKINGVNFGPNLNLTHILFADDILIFVEDKEDYVSNLKMILHLFES 532

Query: 61   ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 120
            ASGLNINL+KSTI PIN+ T R N +   WG S   LP  YLG+PLGGKP+  +FW    
Sbjct: 533  ASGLNINLSKSTIFPINVPTDRANSIVDSWGISKGQLPTTYLGMPLGGKPSSSNFWDNIL 592

Query: 121  EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 180
            +K+Q+K+++WKY+ LSKGG+ITLI +TL S P Y + VFK PK + + I+  WRNFLW  
Sbjct: 593  QKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNG 652

Query: 181  TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSK--------------------- 240
            T +  NI+LI+W+ ++SP  KGGLGI+++ STNFALL K                     
Sbjct: 653  TSNGHNISLIRWNQVVSPKEKGGLGIHSVHSTNFALLCKWLWKFLTEKEPLWKRLIISKY 712

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 713  DQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSL 772

Query: 301  -----------KGDSIANMWNAEKADRDLYPQKPLRSVKEVLWEYMKASLP-PLPDSGVD 360
                       K  S+ ++WN    D +++  +PLR  ++ LW  +KASLP PLPD G  
Sbjct: 773  VVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPS 832

Query: 361  NHRWILNNNGSFTVASIKLARPLNNQDETNEDDGKIYNNLWKSTIPKRCKFF-------- 420
               W LN+N  F  ASIK      +   TN     +Y  LWK   PK+CKFF        
Sbjct: 833  KPLWKLNSNNIFDTASIKKDLSEASASPTNFHP-SLYKTLWKVDFPKKCKFFIWTLIHGC 892

Query: 421  -----------------PSWCILCKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPN 447
                             P+WC +C  ++ED  HLF HCP++  LW K + +L K    PN
Sbjct: 893  INTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALL-KWNSTPN 952

BLAST of CSPI06G18410 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 412.5 bits (1059), Expect = 4.5e-111
Identity = 229/564 (40.60%), Postives = 299/564 (53.01%), Query Frame = 0

Query: 1    MDYLSILLNHLEKKNLIKGVSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 60
            MDY+S LLN + +K  IKGV   G  NLTHLLFA DILLF+EDDE +I N++N + LF+L
Sbjct: 558  MDYISRLLNSVGEK--IKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQL 617

Query: 61   ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 120
            ASGL+INLNKSTISPIN+D  RT  +A++WG S  FLPI YLGVPLGGK   + FW    
Sbjct: 618  ASGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQTTKAFWKNVE 677

Query: 121  EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 180
            EK+ +K+ +WKY+ LSKGGKITLIK++LAS P Y + +FK P    K+I+  WRNFLW+N
Sbjct: 678  EKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKN 737

Query: 181  TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSK--------------------- 240
              +   ++L+ W+ + S   KGGLGI+ ++ TNFALL+K                     
Sbjct: 738  PPETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKY 797

Query: 241  ----KGD----------------------------------------------------- 300
                KGD                                                     
Sbjct: 798  RSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWHGHWHQNSPLSS 857

Query: 301  --------------SIANMWNAEKADRDLYPQKPLRSVKEVLWEYMKASL-PPLPDSGVD 360
                          SI +MWN    D DL P++ LR  +  LW  +K S+     ++G D
Sbjct: 858  HYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWELPLWAELKNSINASFCENGKD 917

Query: 361  NHRWILNNNGSFTVASIKLARPLNNQDETNEDDGKIYNNLWKSTIPKRCKFF-------- 420
            +  W LN+NG +TVAS+K A     Q   +      + NLWK++IPK+C FF        
Sbjct: 918  SPMWALNSNGLYTVASVKKALQQPEQSLLDLQSQNTFKNLWKTSIPKKCIFFIWTLLYDS 977

Query: 421  -----------------PSWCILCKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPN 447
                             PSWC++CK  +EDR HLF  CP    +W+ +   L   +   +
Sbjct: 978  VNTAEQLMKRLPKLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRTISSHLNSNVNCLS 1037

BLAST of CSPI06G18410 vs. NCBI nr
Match: KAA0039770.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24727.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 412.1 bits (1058), Expect = 5.9e-111
Identity = 229/564 (40.60%), Postives = 299/564 (53.01%), Query Frame = 0

Query: 1    MDYLSILLNHLEKKNLIKGVSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 60
            MDY+S LLN + +K  IKGV   G  NLTHLLFA DILLF+EDDE +I N++N + LF+L
Sbjct: 495  MDYMSRLLNSVGEK--IKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQL 554

Query: 61   ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 120
            ASGL+INLNKSTISPIN+D  RT  +A++WG S  FLPI YLGVPLGGK   + FW    
Sbjct: 555  ASGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVE 614

Query: 121  EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 180
            EK+ +K+ +WKY+ LSKGGKITLIK++LAS P Y + +FK P    K+I+  WRNFLW+N
Sbjct: 615  EKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKN 674

Query: 181  TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSK--------------------- 240
              +   ++L+ W+ + S   KGGLGI+ ++ TNFALL+K                     
Sbjct: 675  PPETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKY 734

Query: 241  ----KGD----------------------------------------------------- 300
                KGD                                                     
Sbjct: 735  RSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSS 794

Query: 301  --------------SIANMWNAEKADRDLYPQKPLRSVKEVLWEYMKASL-PPLPDSGVD 360
                          SI +MWN    D DL P++ LR  +  LW  +K SL     ++G D
Sbjct: 795  HYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWEHPLWAELKNSLNASFCENGND 854

Query: 361  NHRWILNNNGSFTVASIKLARPLNNQDETNEDDGKIYNNLWKSTIPKRCKFF-------- 420
            +  W LN+NG +TVAS+K       Q+  +      + NLWK++IPK+C FF        
Sbjct: 855  SPMWTLNSNGLYTVASVKKTLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFIWTLLYDS 914

Query: 421  -----------------PSWCILCKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPN 447
                             PSWC++CK  +EDR HLF  CP    +W+ +   L   +   +
Sbjct: 915  VNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSISSHLSSNVNCLS 974

BLAST of CSPI06G18410 vs. NCBI nr
Match: XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])

HSP 1 Score: 411.8 bits (1057), Expect = 7.7e-111
Identity = 229/564 (40.60%), Postives = 299/564 (53.01%), Query Frame = 0

Query: 1    MDYLSILLNHLEKKNLIKGVSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 60
            MDY+S LLN + +K  IKGV   G  NLTHLLFA DILLF+EDDE +I N++N + LF+L
Sbjct: 495  MDYMSRLLNSVGEK--IKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQL 554

Query: 61   ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 120
            ASGL+INLNKSTISPIN+D  RT  +A++WG S  FLPI YLGVPLGGK   + FW    
Sbjct: 555  ASGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVE 614

Query: 121  EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 180
            EK+ +K+ +WKY+ LSKGGKITLIK++LAS P Y + +FK P    K+I+  WRNFLW+N
Sbjct: 615  EKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNFLWKN 674

Query: 181  TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSK--------------------- 240
              +   ++L+ W+ + S   KGGLGI+ ++ TNFALL+K                     
Sbjct: 675  PPETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKY 734

Query: 241  ----KGD----------------------------------------------------- 300
                KGD                                                     
Sbjct: 735  RSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSS 794

Query: 301  --------------SIANMWNAEKADRDLYPQKPLRSVKEVLWEYMKASL-PPLPDSGVD 360
                          SI +MWN    D DL P++ LR  +  LW  +K SL     ++G D
Sbjct: 795  HYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWEHPLWAELKNSLNASFCENGND 854

Query: 361  NHRWILNNNGSFTVASIKLARPLNNQDETNEDDGKIYNNLWKSTIPKRCKFF-------- 420
            +  W LN+NG +TVAS+K       Q+  +      + NLWK++IPK+C FF        
Sbjct: 855  SPMWTLNSNGLYTVASVKKTLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFIWTLLYDS 914

Query: 421  -----------------PSWCILCKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPN 447
                             PSWC++CK  +EDR HLF  CP    +W+ +   L   +   +
Sbjct: 915  VNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSISSHLSSNVNCLS 974

BLAST of CSPI06G18410 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 397.5 bits (1020), Expect = 1.5e-106
Identity = 218/541 (40.30%), Postives = 286/541 (52.87%), Query Frame = 0

Query: 24  GKHNLTHLLFAADILLFMEDDEETINNMRNALRLFELASGLNINLNKSTISPINIDTQRT 83
           G  NLTHLLFA DILLF+EDDE +I N++N + LF+LASGL+INLNKSTISPIN+D  RT
Sbjct: 3   GNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISPINVDAART 62

Query: 84  NYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETTEKLQRKINNWKYASLSKGGKITL 143
             +A++WG S  FLPI YLGVPLGGK   + FW    EK+ +K+ +WKY+ LSKGGKITL
Sbjct: 63  EQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEKINKKLASWKYSMLSKGGKITL 122

Query: 144 IKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRNTFDKKNINLIKWSTMLSPINKGG 203
           IK++LAS P Y + +FK P    K+I+  WRNFLW+N  +   ++L+ W+ + SP  +GG
Sbjct: 123 IKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGG 182

Query: 204 LGINNIQSTNFALLSK-------------------------KGD---------------- 263
           LGI+ ++ TNFALL+K                         KGD                
Sbjct: 183 LGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFS 242

Query: 264 ---------------------------------------------------SIANMWNAE 323
                                                              SI +MWN  
Sbjct: 243 ICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSFHYPRLFALSTNKDSSIRDMWNNT 302

Query: 324 KADRDLYPQKPLRSVKEVLWEYMKASL-PPLPDSGVDNHRWILNNNGSFTVASIKLARPL 383
             D DL P++ LR  +  LW  +K SL     ++G D+  W LN+NG +TVAS+K A   
Sbjct: 303 LMDWDLNPRRQLREWEYPLWAELKNSLNASFCENGKDSPTWTLNSNGLYTVASVKKALQQ 362

Query: 384 NNQDETNEDDGKIYNNLWKSTIPKRCKFF-------------------------PSWCIL 443
            +Q   +      + NLWK++IPK+C FF                         PSWC++
Sbjct: 363 PDQSLLDLQSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVM 422

Query: 444 CKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQIINQH 447
           CK  +EDR HLF  CP    +W+ +   L   +   +   LC  +   K KTKK +I  +
Sbjct: 423 CKRNDEDRIHLFILCPIAKSIWRLISSHLNSNVNCLSPKDLCITMCSWKQKTKKNVILYN 482

BLAST of CSPI06G18410 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 387.5 bits (994), Expect = 1.6e-103
Identity = 216/565 (38.23%), Postives = 294/565 (52.04%), Query Frame = 0

Query: 1    MDYLSILLNHLEKKNLIKGVSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 60
            MDYLS LL +L +K  I GV+F    NLTH+LFA DIL+F+ED E+ ++N++  L LFE 
Sbjct: 473  MDYLSHLLINLAEKGKINGVNFGPNLNLTHILFADDILIFVEDKEDYVSNLKMILHLFES 532

Query: 61   ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 120
            ASGLNINL+KSTI PIN+ T R N +   WG S   LP  YLG+PLGGKP+  +FW    
Sbjct: 533  ASGLNINLSKSTIFPINVPTDRANSIVDSWGISKGQLPTTYLGMPLGGKPSSSNFWDNIL 592

Query: 121  EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 180
            +K+Q+K+++WKY+ LSKGG+ITLI +TL S P Y + VFK PK + + I+  WRNFLW  
Sbjct: 593  QKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNG 652

Query: 181  TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSK--------------------- 240
            T +  NI+LI+W+ ++SP  KGGLGI+++ STNFALL K                     
Sbjct: 653  TSNGHNISLIRWNQVVSPKEKGGLGIHSVHSTNFALLCKWLWKFLTEKEPLWKRLIISKY 712

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 713  DQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSL 772

Query: 301  -----------KGDSIANMWNAEKADRDLYPQKPLRSVKEVLWEYMKASLP-PLPDSGVD 360
                       K  S+ ++WN    D +++  +PLR  ++ LW  +KASLP PLPD G  
Sbjct: 773  VVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPS 832

Query: 361  NHRWILNNNGSFTVASIKLARPLNNQDETNEDDGKIYNNLWKSTIPKRCKFF-------- 420
               W LN+N  F  ASIK      +   TN     +Y  LWK   PK+CKFF        
Sbjct: 833  KPLWKLNSNNIFDTASIKKDLSEASASPTNFHP-SLYKTLWKVDFPKKCKFFIWTLIHGC 892

Query: 421  -----------------PSWCILCKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPN 447
                             P+WC +C  ++ED  HLF HCP++  LW K + +L K    PN
Sbjct: 893  INTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALL-KWNSTPN 952

BLAST of CSPI06G18410 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-13
Identity = 41/142 (28.87%), Postives = 71/142 (50.00%), Query Frame = 0

Query: 92  FSVNFLPIQYLGVPLGGKPNPRHFWSETTEKLQRKINNWKYASLSKGGKITLIKATLASF 151
           F+   LP++YLG+PL  K      +    EK++ +I  W    LS  G++ LI + + S 
Sbjct: 18  FASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSL 77

Query: 152 PNYHILVFKPPKYVYKDIKTIWRNFLWRNTFDKKNINLIKWSTMLSPINKGGLGINNIQS 211
            N+ +  F+ P    K+I +I  +FLW           + WS + +P ++GGLGI +++ 
Sbjct: 78  TNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKE 137

Query: 212 TN-FALLSKKGDSIANMWNAEK 233
            N  +  S  G++    W  +K
Sbjct: 138 ANKGSFWSISGNTTLGSWMWKK 159

BLAST of CSPI06G18410 vs. TAIR 10
Match: AT4G04650.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.6e-05
Identity = 27/102 (26.47%), Postives = 49/102 (48.04%), Query Frame = 0

Query: 320 PSWCILCKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKK 379
           P+ C+LC A ++ R HLF  C F+ ++W+         L  P     C +   +  + K 
Sbjct: 168 PAECLLCNAHDDSRAHLFFECQFSGVVWRFFTA--STNLNPPAQLMDCLNWLLSPSREKN 227

Query: 380 -QIINQHLVATTLWNIWNENNRRIFKEEEKKVDSVWEDIQAI 421
             +I +    + ++ IW E N+R+     +  +S+ +DIQ I
Sbjct: 228 ICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQLI 267

BLAST of CSPI06G18410 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 2.7e-05
Identity = 34/142 (23.94%), Postives = 64/142 (45.07%), Query Frame = 0

Query: 150 SFPNYHILVFKPPKYVYKDIKTIWRNFLWRNTFDKKNINLIKWSTMLSPINKGGLGINNI 209
           + P Y +  F  PK V K I ++  +F WRN  + K ++   W  +     +GG+G  +I
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61

Query: 210 QSTNFALLSK-------KGDSI------------ANMWNAEKADRDLYPQKPLRSVKEVL 269
           ++ N ALL K       + +S+            ++  NA    R  +  K + + +E+L
Sbjct: 62  EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121

Query: 270 WEYMKASLPPLPDSGVDNHRWI 273
            +  +A +    D  +  H+W+
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWL 143

BLAST of CSPI06G18410 vs. TAIR 10
Match: AT1G45063.1 (copper ion binding;electron carriers )

HSP 1 Score: 47.4 bits (111), Expect = 3.6e-05
Identity = 26/85 (30.59%), Postives = 42/85 (49.41%), Query Frame = 0

Query: 320 PSWCILCKAAEEDRQHLFAHCPFTTLLWKKV--EVILGKPLLFPNSTALCKDLFKTKGKT 379
           PS C+LC A +E RQH+F  CPF+  +W        +  P +F +S    +   + K   
Sbjct: 281 PSLCLLCNALDETRQHVFFDCPFSHEVWSFFCSNARVTPPRMFKDSARWLRHPCRDK--- 340

Query: 380 KKQIINQHLVATTLWNIWNENNRRI 403
           K   I +     ++++IW E N R+
Sbjct: 341 KVAFILKLAYQASVYHIWRERNIRL 362

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P0C2F67.0e-1435.85Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
O003702.6e-0823.79LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1[more]
P113697.0e-0621.35LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE... [more]
Match NameE-valueIdentityDescription
A0A5D3C4J12.2e-11140.60LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DM722.9e-11140.60LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S4E2K53.7e-11140.60LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC1079... [more]
A0A5A7TES37.3e-10740.30LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TIB87.6e-10438.23LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
TYK06777.14.5e-11140.60LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0039770.15.9e-11140.60LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK247... [more]
XP_016902461.17.7e-11140.60PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo][more]
KAA0040037.11.5e-10640.30LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0041397.11.6e-10338.23LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT3G24255.14.7e-1328.87RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT4G04650.11.6e-0526.47RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT4G29090.12.7e-0523.94Ribonuclease H-like superfamily protein [more]
AT1G45063.13.6e-0530.59copper ion binding;electron carriers [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 2..355
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 2..355

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G18410.1CSPI06G18410.1mRNA