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CSPI06G17880 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTTCAGTAGAAAGTTGTGGATTTATTTTTTTGAAAGAAAAGAGTGAAGCACTTTTATGTTTTAAATCCTTTAAAGTTTTTAAAAATCAAAGTGGTCACAAGATAAAATCTTTGAGATCTGACCGTGGTGGGGAATATATAGCTTTTGGTAATTTTTTCAAGGAGCAAGGATTTCACCATCAAATGACAACTCGAATGACTCCACGACAAAATGGAGTTGCAGAAAGAAAGAATAGAACAATCATGGAAATGGCAAGAAGTATGCTAAAAGCAAAAAATCTGCCAAACGATTTTTGGGGAGATGATGTTGCATGTACTGTTTACATTCTGAATCGAGCTCCAACAAGGGTTTTCCAGATA ATGATTTCAGTAGAAAGTTGTGGATTTATTTTTTTGAAAGAAAAGAGTGAAGCACTTTTATGTTTTAAATCCTTTAAAGTTTTTAAAAATCAAAGTGGTCACAAGATAAAATCTTTGAGATCTGACCGTGGTGGGGAATATATAGCTTTTGGTAATTTTTTCAAGGAGCAAGGATTTCACCATCAAATGACAACTCGAATGACTCCACGACAAAATGGAGTTGCAGAAAGAAAGAATAGAACAATCATGGAAATGGCAAGAAGTATGCTAAAAGCAAAAAATCTGCCAAACGATTTTTGGGGAGATGATGTTGCATGTACTGTTTACATTCTGAATCGAGCTCCAACAAGGGTTTTCCAGATA ATGATTTCAGTAGAAAGTTGTGGATTTATTTTTTTGAAAGAAAAGAGTGAAGCACTTTTATGTTTTAAATCCTTTAAAGTTTTTAAAAATCAAAGTGGTCACAAGATAAAATCTTTGAGATCTGACCGTGGTGGGGAATATATAGCTTTTGGTAATTTTTTCAAGGAGCAAGGATTTCACCATCAAATGACAACTCGAATGACTCCACGACAAAATGGAGTTGCAGAAAGAAAGAATAGAACAATCATGGAAATGGCAAGAAGTATGCTAAAAGCAAAAAATCTGCCAAACGATTTTTGGGGAGATGATGTTGCATGTACTGTTTACATTCTGAATCGAGCTCCAACAAGGGTTTTCCAGATA MISVESCGFIFLKEKSEALLCFKSFKVFKNQSGHKIKSLRSDRGGEYIAFGNFFKEQGFHHQMTTRMTPRQNGVAERKNRTIMEMARSMLKAKNLPNDFWGDDVACTVYILNRAPTRVFQI Homology
BLAST of CSPI06G17880 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 9.7e-19 Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 0
BLAST of CSPI06G17880 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 3.2e-14 Identity = 39/111 (35.14%), Postives = 65/111 (58.56%), Query Frame = 0
BLAST of CSPI06G17880 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 3.6e-13 Identity = 38/111 (34.23%), Postives = 65/111 (58.56%), Query Frame = 0
BLAST of CSPI06G17880 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 69.3 bits (168), Expect = 3.3e-11 Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 0
BLAST of CSPI06G17880 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 6.5e-07 Identity = 35/103 (33.98%), Postives = 48/103 (46.60%), Query Frame = 0
BLAST of CSPI06G17880 vs. ExPASy TrEMBL
Match: A0A5D3CLV1 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold132G00180 PE=4 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47 Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 0
BLAST of CSPI06G17880 vs. ExPASy TrEMBL
Match: A0A5D3BQ81 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00890 PE=4 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47 Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 0
BLAST of CSPI06G17880 vs. ExPASy TrEMBL
Match: A0A5D3E3T2 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00030 PE=4 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47 Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 0
BLAST of CSPI06G17880 vs. ExPASy TrEMBL
Match: A0A5A7UZJ8 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001310 PE=4 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47 Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 0
BLAST of CSPI06G17880 vs. ExPASy TrEMBL
Match: A0A5D3CXM6 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001540 PE=4 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47 Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 0
BLAST of CSPI06G17880 vs. NCBI nr
Match: TYJ95504.1 (integrase [Cucumis melo var. makuwa] >TYK08522.1 integrase [Cucumis melo var. makuwa] >TYK12883.1 integrase [Cucumis melo var. makuwa] >TYK20599.1 integrase [Cucumis melo var. makuwa]) HSP 1 Score: 198.7 bits (504), Expect = 2.8e-47 Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 0
BLAST of CSPI06G17880 vs. NCBI nr
Match: KAA0060377.1 (integrase [Cucumis melo var. makuwa]) HSP 1 Score: 198.7 bits (504), Expect = 2.8e-47 Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 0
BLAST of CSPI06G17880 vs. NCBI nr
Match: TYK30104.1 (integrase [Cucumis melo var. makuwa]) HSP 1 Score: 198.7 bits (504), Expect = 2.8e-47 Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 0
BLAST of CSPI06G17880 vs. NCBI nr
Match: KAA0039947.1 (integrase [Cucumis melo var. makuwa]) HSP 1 Score: 198.7 bits (504), Expect = 2.8e-47 Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 0
BLAST of CSPI06G17880 vs. NCBI nr
Match: KAA0038926.1 (integrase [Cucumis melo var. makuwa]) HSP 1 Score: 198.7 bits (504), Expect = 2.8e-47 Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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