CSPI06G17130 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G17130
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	beta-D-xylosidase 1
Location	Chr6: 15449466 .. 15450011 (+)
RNA-Seq Expression	CSPI06G17130
Synteny	CSPI06G17130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTAAGACCCGACCCGACAACCAGCTATCCGGGTCGAACCAACCGGTTCTACAAGGGTCCGGTCATATTCCCATTCGGGTTCGGTTTAAGCTACTAAAAATTCTCCCCCTCCATTTTGGACGCCCCAACAAAAATCTCACTCTCTTTCTCAAGTTTCTCCTCCAATTCCTCCGCCGGAATCAAAGTCTCTCACACTGACTGCGCCCCGTCTTCGATCTCTCCATTCTGATCGACGTCAAGAACACCGGAACCGTCGACGGATCTCACACCACTATCGTCTTCTCAACCGCTCCAAACCAGATCTGGTCGTACTTGATCGGATTCGAAAAGGTCCATATCATGGCCTGGATCTTGAAGCGAGTTCGAATCGAAATTATGTTAAAATTACAGAGAAGTAATTAAAAAGGTAAATTGATTGTAAATTAAAAAAAAAAAATCAAATAGGTTGAAGAAGAAAATTGGAAGTAATTGTGATTATAAGATGTTTGGTATCGAAAAGTAAGATTGTGCCTCAAACGCAGCAAATTTGCGAGGGGCTATT

mRNA sequence

ATGGGCCTAAGACCCGACCCGACAACCAGCTATCCGGGTCGAACCAACCGGTTCTACAAGGGTCCGGTCATATTCCCATTCGGGTTCGTTTCTCCTCCAATTCCTCCGCCGGAATCAAAGTCTCTCACACTGACTGCGCCCCGTCTTCGATCTCTCCATTCTGATCGACGTCAAGAACACCGGAACCGTCGACGGATCTCACACCACTATCGTCTTCTCAACCGCTCCAAACCAGATCTGGTCGTACTTGATCGGATTCGAAAAGGTCCATATCATGGCCTGGATCTTGAAGCGAGTTCGAATCGAAATTATGTTAAAATTACAGAGAAGTAATTAAAAAGGTAAATTGATTGTAAATTAAAAAAAAAAAATCAAATAGGTTGAAGAAGAAAATTGGAAGTAATTGTGATTATAAGATGTTTGGTATCGAAAAGTAAGATTGTGCCTCAAACGCAGCAAATTTGCGAGGGGCTATT

Coding sequence (CDS)

ATGGGCCTAAGACCCGACCCGACAACCAGCTATCCGGGTCGAACCAACCGGTTCTACAAGGGTCCGGTCATATTCCCATTCGGGTTCGTTTCTCCTCCAATTCCTCCGCCGGAATCAAAGTCTCTCACACTGACTGCGCCCCGTCTTCGATCTCTCCATTCTGATCGACGTCAAGAACACCGGAACCGTCGACGGATCTCACACCACTATCGTCTTCTCAACCGCTCCAAACCAGATCTGGTCGTACTTGATCGGATTCGAAAAGGTCCATATCATGGCCTGGATCTTGAAGCGAGTTCGAATCGAAATTATGTTAAAATTACAGAGAAGTAA

Protein sequence

MGLRPDPTTSYPGRTNRFYKGPVIFPFGFVSPPIPPPESKSLTLTAPRLRSLHSDRRQEHRNRRRISHHYRLLNRSKPDLVVLDRIRKGPYHGLDLEASSNRNYVKITEK*

Homology

[Close]

BLAST of CSPI06G17130 vs. ExPASy Swiss-Prot
Match: P83344 (Putative beta-D-xylosidase (Fragment) OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.3e-05
Identity = 19/28 (67.86%), Postives = 21/28 (75.00%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFG 29
           M +R DP   YPGRT RFY GPV+FPFG
Sbjct: 283 MAMRADPARGYPGRTYRFYIGPVVFPFG 310

[Close]

BLAST of CSPI06G17130 vs. ExPASy Swiss-Prot
Match: A5JTQ2 (Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment) OS=Medicago sativa subsp. varia OX=36902 GN=Xyl1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.6e-04
Identity = 18/28 (64.29%), Postives = 20/28 (71.43%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFG 29
           M +R DP T YPGRT RFYKG  +F FG
Sbjct: 606 MNMRADPATGYPGRTYRFYKGETVFSFG 633

[Close]

BLAST of CSPI06G17130 vs. ExPASy Swiss-Prot
Match: A5JTQ3 (Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia OX=36902 GN=Xyl2 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 8.1e-04
Identity = 32/90 (35.56%), Postives = 42/90 (46.67%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFG-------FVSPPIPPPESKSLTLT------AP 60
           M +RPDP T YPGRT RFYKG  +F FG       F    +  P+  S+ L       + 
Sbjct: 606 MNMRPDPATGYPGRTYRFYKGETVFSFGDGISYSTFEHKLVKAPQLVSVPLAEDHVCRSS 665

Query: 61  RLRSLHSDRRQEHRNRRRISHHYRLLNRSK 78
           + +SL  D   EH        H R+ N+ K
Sbjct: 666 KCKSL--DVVGEHCQNLAFDIHLRIKNKGK 693

[Close]

BLAST of CSPI06G17130 vs. ExPASy TrEMBL
Match: A0A0A0KCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G310490 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.6e-10
Identity = 51/121 (42.15%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGFVSPPIPPPESKSLTLTAPRLRSLHSDRRQ-- 60
           MGLRPDPTTSYPGRT RFYKGPVIFPFGF S             ++  +   H+D     
Sbjct: 1   MGLRPDPTTSYPGRTKRFYKGPVIFPFGFSSN------------SSAGINVFHTDCASVF 60

Query: 61  ------EHRNRRRI-SHHYRLLNRSKPDLV--VLDRIRKGPYHGLDLEASSNRNYVKITE 111
                 + +N   +   H  ++  + P+ +   L    K       LEASSNRNYVKITE
Sbjct: 61  DLSILIDVKNTGTVDGSHTTIVFSTAPNQIWSYLIGFEKVHIMAWILEASSNRNYVKITE 109

[Close]

BLAST of CSPI06G17130 vs. ExPASy TrEMBL
Match: A0A6J1L226 (beta-D-xylosidase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111499141 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGF 30
           MGLRPDP+T YPGRT RFYKGPV+FPFGF
Sbjct: 595 MGLRPDPSTGYPGRTYRFYKGPVVFPFGF 623

[Close]

BLAST of CSPI06G17130 vs. ExPASy TrEMBL
Match: A0A5D3BVV3 (Beta-D-xylosidase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00220 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGF 30
           MGLRPDP+T YPGRT RFYKGPV+FPFGF
Sbjct: 452 MGLRPDPSTGYPGRTYRFYKGPVVFPFGF 480

[Close]

BLAST of CSPI06G17130 vs. ExPASy TrEMBL
Match: A0A0A0KHZ3 (Fn3_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G309980 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGF 30
           MGLRPDP+T YPGRT RFYKGPV+FPFGF
Sbjct: 597 MGLRPDPSTGYPGRTYRFYKGPVVFPFGF 625

[Close]

BLAST of CSPI06G17130 vs. ExPASy TrEMBL
Match: A0A6J1CAK4 (beta-D-xylosidase 1 OS=Momordica charantia OX=3673 GN=LOC111009725 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGF 30
           MGLRPDP+T YPGRT RFYKGPV+FPFGF
Sbjct: 421 MGLRPDPSTGYPGRTYRFYKGPVVFPFGF 449

[Close]

BLAST of CSPI06G17130 vs. NCBI nr
Match: KAG7013671.1 (Beta-D-xylosidase 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-06
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGF 30
           MGLRPDP+T YPGRT RFYKGPVIFPFGF
Sbjct: 596 MGLRPDPSTGYPGRTYRFYKGPVIFPFGF 624

[Close]

BLAST of CSPI06G17130 vs. NCBI nr
Match: KAG6575099.1 (Beta-D-xylosidase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-06
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGF 30
           MGLRPDP+T YPGRT RFYKGPVIFPFGF
Sbjct: 596 MGLRPDPSTGYPGRTYRFYKGPVIFPFGF 624

[Close]

BLAST of CSPI06G17130 vs. NCBI nr
Match: XP_008458374.2 (PREDICTED: LOW QUALITY PROTEIN: beta-D-xylosidase 1-like [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-06
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGF 30
           MGLRPDP+T YPGRT RFYKGPV+FPFGF
Sbjct: 594 MGLRPDPSTGYPGRTYRFYKGPVVFPFGF 622

[Close]

BLAST of CSPI06G17130 vs. NCBI nr
Match: XP_022138609.1 (beta-D-xylosidase 1 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-06
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGF 30
           MGLRPDP+T YPGRT RFYKGPV+FPFGF
Sbjct: 421 MGLRPDPSTGYPGRTYRFYKGPVVFPFGF 449

[Close]

BLAST of CSPI06G17130 vs. NCBI nr
Match: TYK02942.1 (beta-D-xylosidase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-06
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGF 30
           MGLRPDP+T YPGRT RFYKGPV+FPFGF
Sbjct: 452 MGLRPDPSTGYPGRTYRFYKGPVVFPFGF 480

[Close]

BLAST of CSPI06G17130 vs. TAIR 10
Match: AT5G49360.1 (beta-xylosidase 1 )

HSP 1 Score: 44.3 bits (103), Expect = 7.5e-05
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 0


Query: 10  SYPGRTNRFYKGPVIFPFGF 30
           +YPGRT RFYKGPV+FPFGF
Sbjct: 605 NYPGRTYRFYKGPVVFPFGF 624

[Close]

BLAST of CSPI06G17130 vs. TAIR 10
Match: AT1G02640.1 (beta-xylosidase 2 )

HSP 1 Score: 40.8 bits (94), Expect = 8.3e-04
Identity = 16/28 (57.14%), Postives = 20/28 (71.43%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFG 29
           M +RP  +   PGRT RFY GPV++PFG
Sbjct: 594 MSMRPVHSKRIPGRTYRFYDGPVVYPFG 621

[Close]

BLAST of CSPI06G17130 vs. TAIR 10
Match: AT5G64570.1 (beta-D-xylosidase 4 )

HSP 1 Score: 40.8 bits (94), Expect = 8.3e-04
Identity = 15/28 (53.57%), Postives = 19/28 (67.86%), Query Frame = 0


Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFG 29
           M +RPD  + YPGRT RFY G  ++ FG
Sbjct: 610 MNMRPDKASGYPGRTYRFYTGETVYAFG 637

The following BLAST results are available for this feature:

BLAST of CSPI06G17130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P83344	7.3e-05	67.86	Putative beta-D-xylosidase (Fragment) OS=Prunus persica OX=3760 PE=2 SV=1	[more]
A5JTQ2	3.6e-04	64.29	Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment) OS=Medicago sativa subs...	[more]
A5JTQ3	8.1e-04	35.56	Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia OX...	[more]

BLAST of CSPI06G17130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCY2	4.6e-10	42.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G310490 PE=4 SV=1	[more]
A0A6J1L226	1.4e-06	86.21	beta-D-xylosidase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111499141 PE=3 SV=1	[more]
A0A5D3BVV3	1.4e-06	86.21	Beta-D-xylosidase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0KHZ3	1.4e-06	86.21	Fn3_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G309980 PE...	[more]
A0A6J1CAK4	1.4e-06	86.21	beta-D-xylosidase 1 OS=Momordica charantia OX=3673 GN=LOC111009725 PE=3 SV=1	[more]

BLAST of CSPI06G17130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013671.1	2.2e-06	89.66	Beta-D-xylosidase 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6575099.1	2.2e-06	89.66	Beta-D-xylosidase 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008458374.2	2.9e-06	86.21	PREDICTED: LOW QUALITY PROTEIN: beta-D-xylosidase 1-like [Cucumis melo]	[more]
XP_022138609.1	2.9e-06	86.21	beta-D-xylosidase 1 [Momordica charantia]	[more]
TYK02942.1	2.9e-06	86.21	beta-D-xylosidase 1-like [Cucumis melo var. makuwa]	[more]

BLAST of CSPI06G17130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49360.1	7.5e-05	85.00	beta-xylosidase 1	[more]
AT1G02640.1	8.3e-04	57.14	beta-xylosidase 2	[more]
AT5G64570.1	8.3e-04	53.57	beta-D-xylosidase 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G17130.1	CSPI06G17130.1	mRNA