CSPI06G17060 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G17060
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGlutamate receptor
LocationChr6: 15384064 .. 15384382 (-)
RNA-Seq ExpressionCSPI06G17060
SyntenyCSPI06G17060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATGAACCATTCATCAAACTATCTCTACAACCTCGACATCAATGAAAACGGTCCCAAGTTGCGAGACGCATTGTCAAATGTTAGGTTTAGAGGGTTAGCTAGTGAGTTTGGTCTCGTCAATGGCCAATTACATCATTCGTTTTCGAGATAGTGAACGTGGTCGGTAACGAAAGAAGGAGTGCGGGGTTTTGGACGCCGAAAGCTGGGCTGACAACAAGTCTACGACACTCAGGGAGAAAAAGGGAGTTGAGACCGATCATATAGCCGGGAGATACCGACGAGACGCCAAAAGGGTGGGAGATTCCAACGGGTGA

mRNA sequence

ATGAAAATGAACCATTCATCAAACTATCTCTACAACCTCGACATCAATGAAAACGGTCCCAAGTTGCGAGACGCATTGTCAAATAAGGAGTGCGGGGTTTTGGACGCCGAAAGCTGGGCTGACAACAAGTCTACGACACTCAGGGAGAAAAAGGGAGTTGAGACCGATCATATAGCCGGGAGATACCGACGAGACGCCAAAAGGGTGGGAGATTCCAACGGGTGA

Coding sequence (CDS)

ATGAAAATGAACCATTCATCAAACTATCTCTACAACCTCGACATCAATGAAAACGGTCCCAAGTTGCGAGACGCATTGTCAAATAAGGAGTGCGGGGTTTTGGACGCCGAAAGCTGGGCTGACAACAAGTCTACGACACTCAGGGAGAAAAAGGGAGTTGAGACCGATCATATAGCCGGGAGATACCGACGAGACGCCAAAAGGGTGGGAGATTCCAACGGGTGA

Protein sequence

MKMNHSSNYLYNLDINENGPKLRDALSNKECGVLDAESWADNKSTTLREKKGVETDHIAGRYRRDAKRVGDSNG*
Homology
[Close]
BLAST of CSPI06G17060 vs. ExPASy TrEMBL
Match: A0A5A7VC72 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001770 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.7e-04
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 1   MKMNHSSNYLYNLDINENGPKLRDALSN 29
           MK N+SSNYLYNL IN+NGPKLRDALSN
Sbjct: 367 MKTNYSSNYLYNLGINQNGPKLRDALSN 394

[Close]
BLAST of CSPI06G17060 vs. NCBI nr
Match: KAE8647081.1 (hypothetical protein Csa_022998 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 5.6e-06
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MKMNHSSNYLYNLDINENGPKLRDALSN 29
          MKMNHSSNYLYNLDINENGPKLRDALSN
Sbjct: 1  MKMNHSSNYLYNLDINENGPKLRDALSN 28

[Close]
BLAST of CSPI06G17060 vs. NCBI nr
Match: KAE8652218.1 (hypothetical protein Csa_022484 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 1   MKMNHSSNYLYNLDINENGPKLRDALSN 29
           MK NHSSNYLYNL INENGPKLRDALSN
Sbjct: 367 MKTNHSSNYLYNLGINENGPKLRDALSN 394

[Close]
BLAST of CSPI06G17060 vs. NCBI nr
Match: XP_031737065.1 (glutamate receptor 2.5 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 1   MKMNHSSNYLYNLDINENGPKLRDALSN 29
           MK NHSSNYLYNL INENGPKLRDALSN
Sbjct: 367 MKTNHSSNYLYNLGINENGPKLRDALSN 394

The following BLAST results are available for this feature:
BLAST of CSPI06G17060 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G17060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VC729.7e-0485.71Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00... [more]
BLAST of CSPI06G17060 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647081.15.6e-06100.00hypothetical protein Csa_022998 [Cucumis sativus][more]
KAE8652218.11.8e-0492.86hypothetical protein Csa_022484 [Cucumis sativus][more]
XP_031737065.11.8e-0492.86glutamate receptor 2.5 [Cucumis sativus][more]
BLAST of CSPI06G17060 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G17060.1CSPI06G17060.1mRNA