CSPI06G16360 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G16360
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Voltage-dependent T-type calcium channel subunit alpha-1I (Ca(V)3.3) like
Location	Chr6: 14765206 .. 14766063 (+)
RNA-Seq Expression	CSPI06G16360
Synteny	CSPI06G16360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCATTTTTGAAAATCTAAAGAAATTCACAGCAATTGTGAGACCCACCAAACAAATGCCCATAGCACACAGTAATCACAATCCGGAATCCTCATCCCTATCCATTTCTCAATCATTACTCCATTTTTCTTCGTTTCCCCCAAAAACCCTAATCCCCCAATCTTCTTCACCCCTTCTTTTCTGCATCTTTCTTATATAATCTCTCTTTTCCACTTCCCAACTCTCCTCACCGGAGCAAACCAAAATTCATGGAGGCGGAGACTGCGCTGGCCGCCATTCTCGGAAGATTGGGGCGTCATTGCTATGCGGTTTTGTGTTTGGGAGTTCTTCTTCTCACTGTTGCTGTAGTTCACTACGTTGGCGACGGAGAGCCGACCGATCCACGCGAGCGGACCAAGCGCCGTCTTCGCCCCTTGCACGGCTCATCAATTCTCGGCGAAGATGCCGCCCGTCAGTTGCCTGCGGTGGTGAATTGAAGCGGCGTATAGGCGGAACGTTTATGCAATTAATTACTAATTTTGCGATATTTTTGTAAAAGGCTAATAAATAGTTTAATTAGTGCTGATTCCTCATCGGGTAACAAAATGTAAATTATTTGCTTCGTTTTGTGTAAATTCCAATGTGAGATTTTTGTGAAATAAATTATTGGTATCATCATCACCATTGTGAACTATATAATTAGGCATTGGGTTGATTCGAGTTTGAGTCATCATCAGGTGATGGTTTATCTCGAGTGCGCTCATCTTTAATGCAATTGAAGAGGTTGTAGGAAGGTTGGTGGAGTATGAATTATCCAAGTTTTATCTAAACAAATTTAGTAGATATGAAGAATGAAAAAAGATGTATCGGAATTATCCTT

mRNA sequence

GGCATTTTTGAAAATCTAAAGAAATTCACAGCAATTGTGAGACCCACCAAACAAATGCCCATAGCACACAGTAATCACAATCCGGAATCCTCATCCCTATCCATTTCTCAATCATTACTCCATTTTTCTTCGTTTCCCCCAAAAACCCTAATCCCCCAATCTTCTTCACCCCTTCTTTTCTGCATCTTTCTTATATAATCTCTCTTTTCCACTTCCCAACTCTCCTCACCGGAGCAAACCAAAATTCATGGAGGCGGAGACTGCGCTGGCCGCCATTCTCGGAAGATTGGGGCGTCATTGCTATGCGGTTTTGTGTTTGGGAGTTCTTCTTCTCACTGTTGCTGTAGTTCACTACGTTGGCGACGGAGAGCCGACCGATCCACGCGAGCGGACCAAGCGCCGTCTTCGCCCCTTGCACGGCTCATCAATTCTCGGCGAAGATGCCGCCCGTCAGTTGCCTGCGGTGGTGAATTGAAGCGGCGTATAGGCGGAACGTTTATGCAATTAATTACTAATTTTGCGATATTTTTGTAAAAGGCTAATAAATAGTTTAATTAGTGCTGATTCCTCATCGGGTAACAAAATGTAAATTATTTGCTTCGTTTTGTGTAAATTCCAATGTGAGATTTTTGTGAAATAAATTATTGGTATCATCATCACCATTGTGAACTATATAATTAGGCATTGGGTTGATTCGAGTTTGAGTCATCATCAGGTGATGGTTTATCTCGAGTGCGCTCATCTTTAATGCAATTGAAGAGGTTGTAGGAAGGTTGGTGGAGTATGAATTATCCAAGTTTTATCTAAACAAATTTAGTAGATATGAAGAATGAAAAAAGATGTATCGGAATTATCCTT

Coding sequence (CDS)

ATGGAGGCGGAGACTGCGCTGGCCGCCATTCTCGGAAGATTGGGGCGTCATTGCTATGCGGTTTTGTGTTTGGGAGTTCTTCTTCTCACTGTTGCTGTAGTTCACTACGTTGGCGACGGAGAGCCGACCGATCCACGCGAGCGGACCAAGCGCCGTCTTCGCCCCTTGCACGGCTCATCAATTCTCGGCGAAGATGCCGCCCGTCAGTTGCCTGCGGTGGTGAATTGA

Protein sequence

MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSSILGEDAARQLPAVVN*

Homology

[Close]

BLAST of CSPI06G16360 vs. ExPASy TrEMBL
Match: A0A0A0KC65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G293180 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.1e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 60
          MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS
Sbjct: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 60

Query: 61 ILGEDAARQLPAVVN 76
          ILGEDAARQLPAVVN
Sbjct: 61 ILGEDAARQLPAVVN 75

[Close]

BLAST of CSPI06G16360 vs. ExPASy TrEMBL
Match: A0A7N2KN99 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.8e-11
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 10 ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 61
          +LG+L RHCYAVLCLGVLLL+V + HYV   EP+DPRERT RRLR  HG S
Sbjct: 7  LLGKLVRHCYAVLCLGVLLLSVTIAHYVPAAEPSDPRERTIRRLRASHGRS 57

[Close]

BLAST of CSPI06G16360 vs. ExPASy TrEMBL
Match: A0A251NMS2 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G098100 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.2e-10
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 10 ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHG 59
          +LG+LGR CYAVLCLGV++L V +V+YVG  E  DP ERT+RRLR +HG
Sbjct: 7  LLGKLGRQCYAVLCLGVIILAVTLVNYVGTEEQKDPMERTRRRLRAIHG 55

[Close]

BLAST of CSPI06G16360 vs. ExPASy TrEMBL
Match: A0A5E4FUM3 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035406 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 10 ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHG 59
          +LG+LGR CYAVLCLGV++L V +V+YVG  E  DP ERT+RRLR +HG
Sbjct: 7  LLGKLGRQCYAVLCLGVIILAVTLVNYVGAEEQKDPMERTRRRLRAIHG 55

[Close]

BLAST of CSPI06G16360 vs. ExPASy TrEMBL
Match: A0A660KR43 (MLO-like protein OS=Carpinus fangiana OX=176857 GN=MLO PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 10  ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHG 59
           +LG+LGR CYAVLCLGVLL++V + H V   EPTDPRER  RRLR L G
Sbjct: 572 LLGKLGRQCYAVLCLGVLLVSVTIAHCVSAAEPTDPRERAGRRLRDLRG 620

[Close]

BLAST of CSPI06G16360 vs. NCBI nr
Match: KAE8647058.1 (hypothetical protein Csa_023003, partial [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 8.2e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 60
          MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS
Sbjct: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 60

Query: 61 ILGEDAA 68
          ILGEDAA
Sbjct: 61 ILGEDAA 67

[Close]

BLAST of CSPI06G16360 vs. NCBI nr
Match: KAG7010620.1 (Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.9 bits (276), Expect = 4.8e-21
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHG 59
          ME ETA+ AILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRER+KRRLR LHG
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHG 58

[Close]

BLAST of CSPI06G16360 vs. NCBI nr
Match: KAG6570773.1 (Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.9 bits (276), Expect = 4.8e-21
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHG 59
          ME ETA+ AILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRER+KRRLR LHG
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHG 58

[Close]

BLAST of CSPI06G16360 vs. NCBI nr
Match: XP_023512260.1 (syntaxin-71-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.9 bits (276), Expect = 4.8e-21
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHG 59
          ME ETA+ AILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRER+KRRLR LHG
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHG 58

[Close]

BLAST of CSPI06G16360 vs. NCBI nr
Match: ONI00617.1 (hypothetical protein PRUPE_6G098100 [Prunus persica])

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 10 ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHG 59
          +LG+LGR CYAVLCLGV++L V +V+YVG  E  DP ERT+RRLR +HG
Sbjct: 7  LLGKLGRQCYAVLCLGVIILAVTLVNYVGTEEQKDPMERTRRRLRAIHG 55

The following BLAST results are available for this feature:

BLAST of CSPI06G16360 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G16360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC65	9.1e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G293180 PE=4 SV=1	[more]
A0A7N2KN99	2.8e-11	70.59	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A251NMS2	9.2e-10	65.31	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G098100 PE=4 SV=1	[more]
A0A5E4FUM3	1.2e-09	65.31	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035406 PE=4 SV=1	[more]
A0A660KR43	1.6e-09	67.35	MLO-like protein OS=Carpinus fangiana OX=176857 GN=MLO PE=3 SV=1	[more]

BLAST of CSPI06G16360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647058.1	8.2e-29	100.00	hypothetical protein Csa_023003, partial [Cucumis sativus]	[more]
KAG7010620.1	4.8e-21	91.38	Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma su...	[more]
KAG6570773.1	4.8e-21	91.38	Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma su...	[more]
XP_023512260.1	4.8e-21	91.38	syntaxin-71-like [Cucurbita pepo subsp. pepo]	[more]
ONI00617.1	1.9e-09	65.31	hypothetical protein PRUPE_6G098100 [Prunus persica]	[more]

BLAST of CSPI06G16360 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G16360.1	CSPI06G16360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045490	pectin catabolic process
biological_process	GO:0050896	response to stimulus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0030599	pectinesterase activity