CSPI06G14750 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G14750
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	40S ribosomal protein S21
Location	Chr6: 12862965 .. 12865180 (+)
RNA-Seq Expression	CSPI06G14750
Synteny	CSPI06G14750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAAACCCTAGTTCTCTTCCTTACCTTTGCTGCCGACTGGTATTAACTATTGGACTTTTTCCCGATTCCTCTAGCTGTTTGTTCATTCGTATGTGTGTTAGAAGTTAAATTTCTTGGCGTTAATTCATCGTTTACTTGCCGAAGCAGGTTTTTATTAGATTTTTGATCAAACATCAAAGCCAAAATGCAGAACGAAGAAGGAAAGATTACCGAGCTTTACATTCCTAGGAAGTGCAATATTATACATAGAGAAATCGAACCTGAGCACGGATGAAACCGCAGAGAGCAAAAGTGGAGAATTGGCCTGTGTAGATGCCATTCTCGTCCAAGTGCCCAATGTTAATCTGAACCGAGGCGTGATCCTTGGAAGTAATGAGTCGATTTGTGGCAGAGCTGAAATAACATATCACAAACAAAATTCGTAAAAGAGTTCTAAGAAATAGTAAAAAAAATATATATATATATATTTTTTTTACTATTTCTTAGAACTCTTTTACGAATTTTGTTTGTGATATGTTATTTCAGCTCTGCCACAAATCGACTCATTACTTCCAAGGATCACGCCTCGGTTCAGATTAACATTGGGCACTTGGACGAGAATGGCATCTACACAGGCCAATTCTCCACTTTTGCTCTCTGCGGTTTCATCCGTGCTCAGGTTCGATTTCTCTATGTATAATATTGGCTGCACTTTTTCTTGTTTATTATGTGATTTTTTTAACCACTGGCTGCTTCACTCGCTTCTAAGCATTGTATTATTGGAATTGCTTTCTGTATGTCCATAACTTGATTTATTGTATGAATCGGTAAGGATAATTTTGTGTATGTGTTTATTTCGAATTTAGTTGCTAACCTAAATATTGTTCATGATTTGATGTGCTTCATTTTTATTTTTAAGATTTACATTCTTAGGAAGTTTTCTGTTGACCACTCTTATCATCCATTCAACTATTTTATCCGAGGACTCACAAATCAGCTAATATCCCAAGCCTTGCCGAAATCTTCACATTCGTCAAACCTTGGTCTATAATATTTAATCTTTAATTTAGCTCTCCAGAGAAATCATTATAGCATAGAAAGGAAACGGAAGAGAAATTATGTATTAGTATCATTGATTACAGTTTTTAAATGATATGAAATCATTTAACGGATAGGAAAAGGATCAGATTTGATTCTTATATTTGATTACGATCTCACTCGAACACAGGATGTCATAGAGGTTCTACAAATACGTCCTTTATTTTTGAAGATTCGAGTACGTTGATTTAACATACACAATTCGTGTATGATGTTGATTGTATTACCTTGTGTACTATCTTTCATATGAACATGTGAAGATAATTTTCAACATATAAATTTTTGCAAGGATGGATTTTGATATTTTGAAGTATATCAATTTAGTCTTTTGACATCATTGTTTCCTCCACACAAAATCTCATTGAAGTTAGCGGGTAAAGTTTTACATTAATTACTGTCACAATTCTCAAAAACTTGTTTGTCATACTTCGTACATATTCAGGTATGATTGTTTGAAATCCAAATGTTCTCATTGTAGAGGATAAATAAAACTTAAAGGTTTGGAAACTAAATGAATACTTGTTTGTTTTATAACACGAAGATCGTGTATGTCACGAGTATTAATTTTTAGTATATACAACGAAGTTAATCTCTTGGCTCGATATTTATTCGACAGGGAGATGCAGACAGTGCATTGGATAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAGAAAATCCAAACCTTCTTCTACTTGAAATATTATGTTTCTAATTAAGTTAGTGTTTCATTGAGAATTTATGAATATTGAGAGAGCCTAGCCTGCCTTTTGCTGCTAAAATTTGTAGTTTTTGTTGGAATCTTCATGTGGTGAAGCTGGTTTTTGATAATTTCTTCGTGGATTCATATTTGCGCTCTTCGGTTAATCCATATTTTTCTAGCACTTGGGGATTTTTTTCCTCTTTTAAAATTAAAAGTTTTACTTTCTAACAAGACAGTCAGTAGTAGTGAAAGCAGGAAACGATCTTGTTTCTTGCAATCAAATTTTGATTATTTGAGTTTACTAGTAGTAATATTGTCCAGATTTTAGAATGGTACTTTTTATCATTCAGTCTTTGGTTTTTCTTGATTATGCACTTGTTTACTGCAGTTTTTATGACGAACAACTAATATAAATTACTATTCTGAT

mRNA sequence

ATCAAACCCTAGTTCTCTTCCTTACCTTTGCTGCCGACTGGTTTTTATTAGATTTTTGATCAAACATCAAAGCCAAAATGCAGAACGAAGAAGGAAAGATTACCGAGCTTTACATTCCTAGGAACTCTGCCACAAATCGACTCATTACTTCCAAGGATCACGCCTCGGTTCAGATTAACATTGGGCACTTGGACGAGAATGGCATCTACACAGGCCAATTCTCCACTTTTGCTCTCTGCGGTTTCATCCGTGCTCAGGGAGATGCAGACAGTGCATTGGATAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAGAAAATCCAAACCTTCTTCTACTTGAAATATTATGTTTCTAATTAAGTTAGTGTTTCATTGAGAATTTATGAATATTGAGAGAGCCTAGCCTGCCTTTTGCTGCTAAAATTTGTAGTTTTTGTTGGAATCTTCATGTGGTGAAGCTGGTTTTTGATAATTTCTTCGTGGATTCATATTTGCGCTCTTCGGTTAATCCATATTTTTCTAGCACTTGGGGATTTTTTTCCTCTTTTAAAATTAAAAGTTTTACTTTCTAACAAGACAGTCAGTAGTAGTGAAAGCAGGAAACGATCTTGTTTCTTGCAATCAAATTTTGATTATTTGAGTTTACTAGTAGTAATATTGTCCAGATTTTAGAATGGTACTTTTTATCATTCAGTCTTTGGTTTTTCTTGATTATGCACTTGTTTACTGCAGTTTTTATGACGAACAACTAATATAAATTACTATTCTGAT

Coding sequence (CDS)

ATGCAGAACGAAGAAGGAAAGATTACCGAGCTTTACATTCCTAGGAACTCTGCCACAAATCGACTCATTACTTCCAAGGATCACGCCTCGGTTCAGATTAACATTGGGCACTTGGACGAGAATGGCATCTACACAGGCCAATTCTCCACTTTTGCTCTCTGCGGTTTCATCCGTGCTCAGGGAGATGCAGACAGTGCATTGGATAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAG

Protein sequence

MQNEEGKITELYIPRNSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ*

Homology

[Close]

BLAST of CSPI06G14750 vs. ExPASy Swiss-Prot
Match: Q3E902 (40S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 9.5e-34
Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++TELYIPR  SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQ 81
          QGDADS +DRLWQKKK E +Q
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQ 81

[Close]

BLAST of CSPI06G14750 vs. ExPASy Swiss-Prot
Match: Q9M337 (40S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.0e-32
Identity = 64/82 (78.05%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          M+N+ G++TELYIPR  SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADS +DRLWQKKK E +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

[Close]

BLAST of CSPI06G14750 vs. ExPASy Swiss-Prot
Match: P35687 (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.0e-32
Identity = 65/82 (79.27%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++ +LY+PR  SATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRA
Sbjct: 1  MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQK+KAEV+QQ
Sbjct: 61 QGDADSALDRLWQKRKAEVKQQ 82

[Close]

BLAST of CSPI06G14750 vs. ExPASy Swiss-Prot
Match: Q41852 (40S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.4e-31
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGK  +LY+PR  SATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RA
Sbjct: 1  MQNEEGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQ 81
          QGDADS+LDRLWQKKKAE++Q
Sbjct: 61 QGDADSSLDRLWQKKKAEIKQ 81

[Close]

BLAST of CSPI06G14750 vs. ExPASy Swiss-Prot
Match: Q9SMI2 (40S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-22
Identity = 49/75 (65.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIR 60
          MQN+EGKI +LYIPR  SATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R
Sbjct: 1  MQNDEGKIVDLYIPRKCSATNRLISATDHAAVQINVGHVDPNSGLYTGDYTTFALCGFVR 60

Query: 61 AQGDADSALDRLWQK 74
          + G++D+AL+RL  K
Sbjct: 61 SMGESDAALNRLCVK 75

[Close]

BLAST of CSPI06G14750 vs. ExPASy TrEMBL
Match: A0A0A0KHD3 (40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_6G194160 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.7e-36
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKKAEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKAEVRQQ 82

[Close]

BLAST of CSPI06G14750 vs. ExPASy TrEMBL
Match: A0A6J1CCB6 (40S ribosomal protein S21 OS=Momordica charantia OX=3673 GN=LOC111009905 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.0e-35
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKKAEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKAEVRQQ 82

[Close]

BLAST of CSPI06G14750 vs. ExPASy TrEMBL
Match: A0A1S4DSM1 (40S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of CSPI06G14750 vs. ExPASy TrEMBL
Match: A0A5D3CXC9 (40S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001000 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of CSPI06G14750 vs. ExPASy TrEMBL
Match: A0A0A0L7W3 (40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of CSPI06G14750 vs. NCBI nr
Match: XP_004143089.1 (40S ribosomal protein S21-2 [Cucumis sativus] >XP_038875675.1 40S ribosomal protein S21-2-like [Benincasa hispida] >KGN47181.1 hypothetical protein Csa_021003 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 9.7e-36
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKKAEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKAEVRQQ 82

[Close]

BLAST of CSPI06G14750 vs. NCBI nr
Match: XP_022138832.1 (40S ribosomal protein S21-2-like [Momordica charantia] >XP_022138833.1 40S ribosomal protein S21-2-like [Momordica charantia] >XP_022138834.1 40S ribosomal protein S21-2-like [Momordica charantia])

HSP 1 Score: 158.7 bits (400), Expect = 2.2e-35
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKKAEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKAEVRQQ 82

[Close]

BLAST of CSPI06G14750 vs. NCBI nr
Match: XP_004134210.2 (40S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_008458454.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_016898984.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_038879937.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906504.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906506.1 40S ribosomal protein S21-2 [Benincasa hispida] >KAA0049493.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa] >KGN57104.1 hypothetical protein Csa_010287 [Cucumis sativus] >TYK16172.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 2.8e-35
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of CSPI06G14750 vs. NCBI nr
Match: XP_022138287.1 (40S ribosomal protein S21-2 [Momordica charantia] >XP_022138288.1 40S ribosomal protein S21-2 [Momordica charantia] >XP_022138289.1 40S ribosomal protein S21-2 [Momordica charantia])

HSP 1 Score: 157.1 bits (396), Expect = 6.3e-35
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of CSPI06G14750 vs. NCBI nr
Match: XP_022930553.1 (40S ribosomal protein S21-2-like [Cucurbita moschata] >XP_023000447.1 40S ribosomal protein S21-2-like [Cucurbita maxima] >XP_023513574.1 40S ribosomal protein S21-2-like [Cucurbita pepo subsp. pepo] >KAG6593967.1 40S ribosomal protein S21-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026309.1 40S ribosomal protein S21-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.8 bits (395), Expect = 8.2e-35
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of CSPI06G14750 vs. TAIR 10
Match: AT5G27700.1 (Ribosomal protein S21e )

HSP 1 Score: 143.7 bits (361), Expect = 6.7e-35
Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++TELYIPR  SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQ 81
          QGDADS +DRLWQKKK E +Q
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQ 81

[Close]

BLAST of CSPI06G14750 vs. TAIR 10
Match: AT3G53890.1 (Ribosomal protein S21e )

HSP 1 Score: 140.2 bits (352), Expect = 7.4e-34
Identity = 64/82 (78.05%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          M+N+ G++TELYIPR  SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADS +DRLWQKKK E +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

[Close]

BLAST of CSPI06G14750 vs. TAIR 10
Match: AT3G53890.2 (Ribosomal protein S21e )

HSP 1 Score: 140.2 bits (352), Expect = 7.4e-34
Identity = 64/82 (78.05%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          M+N+ G++TELYIPR  SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADS +DRLWQKKK E +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

The following BLAST results are available for this feature:

BLAST of CSPI06G14750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E902	9.5e-34	82.72	40S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2	[more]
Q9M337	1.0e-32	78.05	40S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1	[more]
P35687	3.0e-32	79.27	40S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3...	[more]
Q41852	3.4e-31	77.78	40S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1	[more]
Q9SMI2	4.9e-22	65.33	40S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1	[more]

BLAST of CSPI06G14750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHD3	4.7e-36	97.56	40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_6G194160 PE=3 SV=1	[more]
A0A6J1CCB6	1.0e-35	96.34	40S ribosomal protein S21 OS=Momordica charantia OX=3673 GN=LOC111009905 PE=3 SV...	[more]
A0A1S4DSM1	1.4e-35	96.34	40S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1	[more]
A0A5D3CXC9	1.4e-35	96.34	40S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0L7W3	1.4e-35	96.34	40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1	[more]

BLAST of CSPI06G14750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143089.1	9.7e-36	97.56	40S ribosomal protein S21-2 [Cucumis sativus] >XP_038875675.1 40S ribosomal prot...	[more]
XP_022138832.1	2.2e-35	96.34	40S ribosomal protein S21-2-like [Momordica charantia] >XP_022138833.1 40S ribos...	[more]
XP_004134210.2	2.8e-35	96.34	40S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S rib...	[more]
XP_022138287.1	6.3e-35	95.12	40S ribosomal protein S21-2 [Momordica charantia] >XP_022138288.1 40S ribosomal ...	[more]
XP_022930553.1	8.2e-35	93.90	40S ribosomal protein S21-2-like [Cucurbita moschata] >XP_023000447.1 40S riboso...	[more]

BLAST of CSPI06G14750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27700.1	6.7e-35	82.72	Ribosomal protein S21e	[more]
AT3G53890.1	7.4e-34	78.05	Ribosomal protein S21e	[more]
AT3G53890.2	7.4e-34	78.05	Ribosomal protein S21e	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038579	Ribosomal protein S21e superfamily	GENE3D	3.30.1230.20		coord: 1..80 e-value: 6.8E-38 score: 130.4
IPR001931	Ribosomal protein S21e	PFAM	PF01249	Ribosomal_S21e	coord: 1..75 e-value: 4.4E-34 score: 116.4
IPR001931	Ribosomal protein S21e	PIRSF	PIRSF002148	RPS21e	coord: 1..81 e-value: 1.2E-33 score: 113.0
IPR001931	Ribosomal protein S21e	PANTHER	PTHR10442	40S RIBOSOMAL PROTEIN S21	coord: 1..81
None	No IPR available	PANTHER	PTHR10442:SF13	40S RIBOSOMAL PROTEIN S21	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G14750.2	CSPI06G14750.2	mRNA
CSPI06G14750.1	CSPI06G14750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome