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CSPI06G14690 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGCGTATAAACTACGCGGTCTTCTTTAGGTCTTTATATCGACTAAAAAAATCGGCCTCCATCGCCAAATCTCTCTCCCCAAACCATTACACCGTCGAGGAATCTCCGAAACCCTAAATTCCCATTTTCTTCTCAGTCTTCTTTTTTCGATTACTCCTTCAACTTTGTTTTCTTTCAATTTTCTCTTCAACCATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGAGGAAGAGGTTCTGGACCTGGTCCCGTCCGTAGATTCCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGTACGGTTTCGAGTTGCTCAATGTTTATGTCGATTTGTCTCGATTTAGCTCCTTGAATTCTGGATTTAGGTTTTGTTTTGAACGTTTTTGATTTGTTAAACGTTAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTTCTGGTGCAAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTATCTAACGAAGATATTAAGGTATTTATAACTCTTGTGGATGAGTGGAACGAGAAGAGATGTTTCCTTTCTTGTTTCCTTTCTTGTTTGCTTTTGTTGACAGTCTTCGTGTTTGCAGGAACTTTTTTCTGAAGTTGGTGATATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGTATCTTACGAGGCCTGGCATAAGATACTGGTTCTTGAGCATTATCTATTTTTGGGCGAAGTTAAGAAATTCTCTGTCTATAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTAAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGTATAAACTCTATTATGTTTTTATGCCTAATCATTGAAATTAGAACACAGATTTGTTTATAATTGGATGGAATAGTTAACTACATCCGCATATTGTAACATAATATATCATGAATTGCAAGTATTACTGTTAAAGTTTTCAGATTGATATTAGCTGTTTTCAGATTCTTAAGTCTTATTATAACTGTTAAAGTTTTCTTCCCCTTGTTTTGGTGACCTTTAATTCTGCTTATAAAGGATTTGTATTACGGCCTCTTCATTTGTTGTAGTAGTTAACTTGTGGTATATTTTAGGTGGAGTATGCTGTTGTATGTTTTCTCGGGAAAATTTGTCTCTGATGCAGACAATTATGGCATATGAATTCGTACTTGAATAACATTTTTACAGATTTGTACAATGATACACGATAAAGATGGTTGGAGCCATTTTTTTTCATTTGTAGTGTGTCCCCTTTACTCAAATCTCTTTATATTTTGAGCTCAGTTTATTTGGCTTTGATTTTACAATGTTTTATATAATCAGTGGTACCGTCCTCTGAGCCATCCATATCATAGTGACATTCATTTTATAATGGAACAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCATGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGCCCTAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAGTTGGTTCTTATATAGATGCTTTTGGTTCAACGAGCACCCTCTGTTCTCTGTATCACCACCATTGTCTAGACTTGGCAGAAAAGGGCTATAGTTTTTCCGTGAATTGGTTTGAATTTCTTTACAGCTTTTGGGCTTTCTATTGTTAGCTTTCGTATGACTTCAGCACGGTAATGTAATTGATGAACAGTAGTCACTGTGTACTCTGCTTTCATTCATTAAGTCCTTTCTGTTTCATTTAATGAGTTGGGAATCAAAGGATCTTCTATTTCCCTTAGCCTGATCACATCTGCAAGGGTGACATTGGTTGGAATAAAACCCTGGCTGCTAATTATACATCAAATGAGTTGCGGTTCCCCATTGAGGTATGATGTCTATATTTTTGTGCTGCTAATTTCCATATTTTTCTCTCATGATTGTAACTGATGATGTTTCTCTTTTAATTTTTTCTCAGGGAACCTCAACTCAATAAATCTAATATGTAAGGCATTGAACCGAGAGTTGGCTAACGTGCTAAAAGATGAACAGTCTTCATAGCTATGGGATCCGACTCGAGGCGAATGAAATTAAGAAATTTGCAAGATGAATAAGCCTTTGTTGGTGTATGGAATCTTTGCCTGCGTTTTATAGTAAAAATGCCTGATAATAGGTGAGATATCATTATTTTAAAGTAATTGTCCAAATGTATGCAACGTGGTGGTGGTATTCTACTGCTGTGCTTGTGGAGCGAATCCGCTGAGCAGTTTGCCGCAACTCAGAGGCCTTCATTTGAGGTACAATACCATCACTGTTGAGGGACAGTATCAAGTTTTTATACTGCTGAGTGCTAGTCTTGCAACATGATCTCCTTCATTAGACTATGGATAGCATCATGGCATTTTGACCCTGATCAACGAGCGGTAAAAACTTGGTCTCTTCGGAATCATATTCAATGCATTTACATTTGTTTGAATATTTGAAAACAACCTGCCTGTGGATTGAGACGAATATGTGTAGGGGTAAGGAGTAATGCCATTGGATTTTCATATGATTATTTTCACTGACATATAGTATCAATAGCGTAGATAGGTATGTTGATATCACCTTCTTCATATTTCCATACTCCCCTTCGATTTAAATTTGGACCAGTTTTGATGGTTTATTTGTAAAAGCTATAATGTGTATGTCAATATCAATTTTGACTGAATGTGGTTGTTTATATAGATAATGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGATGTTTAATGTTCTAATTTATAGATTATTTCGTAGCTGGTATGAATAGCACAAATTAATATATATATGTATTTTTAATAGTATATTGCGATGTTAAATTTGAAATAGAATATCAGACTGAAAGTCTTTTGATTCCACAGTTAAATGTGGATGTATATATGTGATTGCACGATGGAATCAGATGGTGTCAGTGCTTGGAAGACCGCGACTCTAATTTGAGGAAGCCTTGTTTATTTATTTTGATCTTTTTATAATAGAACTATAAGAGAACAATGTTTTACCAAACGACCAAACATTGTTCTCTACACTAAGTCCTCATGTAGGCCTTTGTGGTGAAGTTTAGGGTACTAGCTTGGAATCTTTTAAATCGGTCTATATCCTATTTTGTTCTATTTTGGTTCTATTTTGGTTCACTCTTGTAGACTGATATTTCAAGAATGTTTTGTTTGATCTTTGCTATTAAAACTAAA CGCGTATAAACTACGCGGTCTTCTTTAGGTCTTTATATCGACTAAAAAAATCGGCCTCCATCGCCAAATCTCTCTCCCCAAACCATTACACCGTCGAGGAATCTCCGAAACCCTAAATTCCCATTTTCTTCTCAGTCTTCTTTTTTCGATTACTCCTTCAACTTTGTTTTCTTTCAATTTTCTCTTCAACCATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGAGGAAGAGGTTCTGGACCTGGTCCCGTCCGTAGATTCCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTTCTGGTGCAAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTATCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGATATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTAAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCATGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGCCCTAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAGTTGGTTCTTATATAGATGCTTTTGGTTCAACGAGCACCCTCTGTTCTCTGTATCACCACCATTGTCTAGACTTGGCAGAAAAGGGCTATAGTTTTTCCGTGAATTGGTTTGAATTTCTTTACAGCTTTTGGGCTTTCTATTGTTAGCTTTCGTATGACTTCAGCACGGTAATGTAATTGATGAACAGTAGTCACTGTGTACTCTGCTTTCATTCATTAAGTCCTTTCTGTTTCATTTAATGAGTTGGGAATCAAAGGATCTTCTATTTCCCTTAGCCTGATCACATCTGCAAGGGTGACATTGGTTGGAATAAAACCCTGGCTGCTAATTATACATCAAATGAGTTGCGGTTCCCCATTGAGGGAACCTCAACTCAATAAATCTAATATGTAAGGCATTGAACCGAGAGTTGGCTAACGTGCTAAAAGATGAACAGTCTTCATAGCTATGGGATCCGACTCGAGGCGAATGAAATTAAGAAATTTGCAAGATGAATAAGCCTTTGTTGGTGTATGGAATCTTTGCCTGCGTTTTATAGTAAAAATGCCTGATAATAGGTGAGATATCATTATTTTAAAGTAATTGTCCAAATGTATGCAACGTGGTGGTGGTATTCTACTGCTGTGCTTGTGGAGCGAATCCGCTGAGCAGTTTGCCGCAACTCAGAGGCCTTCATTTGAGGTACAATACCATCACTGTTGAGGGACAGTATCAAGTTTTTATACTGCTGAGTGCTAGTCTTGCAACATGATCTCCTTCATTAGACTATGGATAGCATCATGGCATTTTGACCCTGATCAACGAGCGTTAAATGTGGATGTATATATGTGATTGCACGATGGAATCAGATGGTGTCAGTGCTTGGAAGACCGCGACTCTAATTTGAGGAAGCCTTGTTTATTTATTTTGATCTTTTTATAATAGAACTATAAGAGAACAATGTTTTACCAAACGACCAAACATTGTTCTCTACACTAAGTCCTCATGTAGGCCTTTGTGGTGAAGTTTAGGGTACTAGCTTGGAATCTTTTAAATCGGTCTATATCCTATTTTGTTCTATTTTGGTTCTATTTTGGTTCACTCTTGTAGACTGATATTTCAAGAATGTTTTGTTTGATCTTTGCTATTAAAACTAAA ATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGAGGAAGAGGTTCTGGACCTGGTCCCGTCCGTAGATTCCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTTCTGGTGCAAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTATCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGATATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTAAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCATGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGCCCTAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAG MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN* Homology
BLAST of CSPI06G14690 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1) HSP 1 Score: 265.4 bits (677), Expect = 6.3e-70 Identity = 158/251 (62.95%), Postives = 189/251 (75.30%), Query Frame = 0
BLAST of CSPI06G14690 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 8.2e-62 Identity = 159/290 (54.83%), Postives = 181/290 (62.41%), Query Frame = 0
BLAST of CSPI06G14690 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 1.9e-42 Identity = 124/293 (42.32%), Postives = 161/293 (54.95%), Query Frame = 0
BLAST of CSPI06G14690 vs. ExPASy Swiss-Prot
Match: O08583 (THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3) HSP 1 Score: 170.2 bits (430), Expect = 2.7e-41 Identity = 112/258 (43.41%), Postives = 146/258 (56.59%), Query Frame = 0
BLAST of CSPI06G14690 vs. ExPASy Swiss-Prot
Match: Q3T0I4 (THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 4.7e-41 Identity = 115/265 (43.40%), Postives = 148/265 (55.85%), Query Frame = 0
BLAST of CSPI06G14690 vs. ExPASy TrEMBL
Match: A0A0A0KBU2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV=1) HSP 1 Score: 467.2 bits (1201), Expect = 4.0e-128 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
BLAST of CSPI06G14690 vs. ExPASy TrEMBL
Match: A0A1S3BK70 (THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 PE=4 SV=1) HSP 1 Score: 458.8 bits (1179), Expect = 1.4e-125 Identity = 233/237 (98.31%), Postives = 235/237 (99.16%), Query Frame = 0
BLAST of CSPI06G14690 vs. ExPASy TrEMBL
Match: A0A5A7V158 (THO complex subunit 4A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00510 PE=4 SV=1) HSP 1 Score: 417.9 bits (1073), Expect = 2.8e-113 Identity = 212/217 (97.70%), Postives = 215/217 (99.08%), Query Frame = 0
BLAST of CSPI06G14690 vs. ExPASy TrEMBL
Match: A0A6J1G721 (THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 SV=1) HSP 1 Score: 417.2 bits (1071), Expect = 4.7e-113 Identity = 218/238 (91.60%), Postives = 222/238 (93.28%), Query Frame = 0
BLAST of CSPI06G14690 vs. ExPASy TrEMBL
Match: A0A6J1L1M6 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=1) HSP 1 Score: 415.6 bits (1067), Expect = 1.4e-112 Identity = 217/238 (91.18%), Postives = 221/238 (92.86%), Query Frame = 0
BLAST of CSPI06G14690 vs. NCBI nr
Match: XP_004143092.1 (THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_020836 [Cucumis sativus]) HSP 1 Score: 467.2 bits (1201), Expect = 8.3e-128 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
BLAST of CSPI06G14690 vs. NCBI nr
Match: XP_008448384.1 (PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448387.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_016900540.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo]) HSP 1 Score: 458.8 bits (1179), Expect = 2.9e-125 Identity = 233/237 (98.31%), Postives = 235/237 (99.16%), Query Frame = 0
BLAST of CSPI06G14690 vs. NCBI nr
Match: XP_038901991.1 (THO complex subunit 4A-like [Benincasa hispida]) HSP 1 Score: 453.4 bits (1165), Expect = 1.2e-123 Identity = 231/237 (97.47%), Postives = 232/237 (97.89%), Query Frame = 0
BLAST of CSPI06G14690 vs. NCBI nr
Match: KAA0061942.1 (THO complex subunit 4A-like isoform X1 [Cucumis melo var. makuwa] >TYK23987.1 THO complex subunit 4A-like isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 417.9 bits (1073), Expect = 5.7e-113 Identity = 212/217 (97.70%), Postives = 215/217 (99.08%), Query Frame = 0
BLAST of CSPI06G14690 vs. NCBI nr
Match: KAG7035419.1 (THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 417.2 bits (1071), Expect = 9.8e-113 Identity = 218/238 (91.60%), Postives = 222/238 (93.28%), Query Frame = 0
BLAST of CSPI06G14690 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 265.4 bits (677), Expect = 4.4e-71 Identity = 158/251 (62.95%), Postives = 189/251 (75.30%), Query Frame = 0
BLAST of CSPI06G14690 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 265.0 bits (676), Expect = 5.8e-71 Identity = 158/252 (62.70%), Postives = 189/252 (75.00%), Query Frame = 0
BLAST of CSPI06G14690 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 259.2 bits (661), Expect = 3.2e-69 Identity = 157/251 (62.55%), Postives = 188/251 (74.90%), Query Frame = 0
BLAST of CSPI06G14690 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 238.4 bits (607), Expect = 5.8e-63 Identity = 159/290 (54.83%), Postives = 181/290 (62.41%), Query Frame = 0
BLAST of CSPI06G14690 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 236.9 bits (603), Expect = 1.7e-62 Identity = 158/288 (54.86%), Postives = 180/288 (62.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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