CSPI06G14480 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G14480
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 12679218 .. 12680809 (-)
RNA-Seq ExpressionCSPI06G14480
SyntenyCSPI06G14480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAGGCTCACGATCCATGGCCGATTGGAAAATTGGCACTGTTTTCGTCAAACTTGCGGTTGTGAGCAACTGCTGAATTTTCCGGCCATGGAAAATTGCTTGGTTGGAAGTCATGGCATGGCTGTTCAACCTGTTTGTAAGAAATTGAAGAGGTCATTTCACTGCTGCTCAAAGTTCCACAAACCCAAGCTTCGCACCTCACATTGAGGAAGCTAATGGTTTAGTTGTTGAAAGGAATATCTGTGACTTTTTCGAGTTCTCACCCGGGTTTAAGCAGTAGGGCTTCCTGTGAATATCAATTACCGGAAATGTAGCTGATGTGAAGCAGCAGGAAGAATTGCGAGAGAAAAAACAGAGTTCTTGTTTGGTCCATCCTAAAAGAATGGAGAAGCATACACTTGTTTGGTTGCCTAGACGCCGATGCAAATCCTTATGCGTTGAAGGTTACGTATAGGTTCGGAATGTCCAAACAAAAAGACAACAAACCCCAAAAGTAAACGAATTACAGACAGATTTCAGTTGGGTCAAACCCAAAACCATTGAGTTTTGAACCAATTTTAGTTTCGACGACTTTGCGAGGAAATTGGAAGTTCTCAGGTCAGTCTAGTAAGTCAATGTTTCTATACCTAATATTCAAGTGGGGCTGGGAAGAAGAAGAACAGATGTTTTCCTGTTTTCTTTTTCCCTCATTTGATTATGATTTCTAGATAAAAAAAGGGGACACCCTAGTATTTTACTTGGTTGCGTATGAACAAATTTGTTTCTTCTAACCGCTGATTATTAGATTATTTAGAAATCCAATTATTTCTACTGTTTATTTGATTGCTATTCAAAGGATAAAACCATCCTATTCTATGAATCCTATTAAATTTCTATATTCAACTGCTTGAAAGAACAGGAACCATGACCTTCGGGTGGAATTGGTCATATCTTCGTGTAATCTAACAGTCTTTGGAATTTCAATAATTTTGCCAACAACCCTTAAATCTTTTTCTGTAAATTATTGAACCGGTCAACTAACCCATCTGTTCATCTTATGAAGACCGTTCCCTGAGGTCGAGGATATGGAATTTGGACCAGGCGAAGAGACTTGTGCTGGGACCAAGGGGACTAGGATTCTCCAATTTTGGGTGCTGTGGGTCTCCACGGTTAGATTTCACTACTTGCCCTGTGTTCTTAAATGATATTATCATCTTGATTCTTTGATATTTTTCAAGTTTCTGCTGTATCTTTATGAACAAATGTCAAAATGTTTTGGTAATAAAGAAGAATAAAGCAATAATAATTCTTTTTGGTAGTCAAATAAAACTCTGTATCATATTTCAACTTTTACTTTTCTCCTACTCCTCCTATCTATCTATCTACCCTTTGGGTTTATTTTACATAAGTATAACATGGAGTAAACCGTGTCATATTCATTAAGGCAAAACCTGTAAGTTTCTTATTATCTCTAATATTTAAACGAAACTTGTCTTCTATTTCATCTCCAGGAGCCGCCTCCTTCTGAACCTGCCATATCCTGTGAAAATTCGTTAGCCTCTGAAAGAAAGCCCCACCTTTGTTCTTTTCTTCTTCCTATTGCTATTTAA

mRNA sequence

ATGTTAAGGCTCACGATCCATGGCCGATTGGAAAATTGGCACTGTTTTCGTCAAACTTGCGGTTGTGAGCAACTGCTGAATTTTCCGGCCATGGAAAATTGCTTGGTTGGAAGTCATGGCATGGCTGTTCAACCTGTTTGTAAGAAATTGAAGAGACCGTTCCCTGAGGTCGAGGATATGGAATTTGGACCAGGCGAAGAGACTTGTGCTGGGACCAAGGGGACTAGGATTCTCCAATTTTGGGTGCTGTGGGTCTCCACGGAGCCGCCTCCTTCTGAACCTGCCATATCCTGTGAAAATTCGTTAGCCTCTGAAAGAAAGCCCCACCTTTGTTCTTTTCTTCTTCCTATTGCTATTTAA

Coding sequence (CDS)

ATGTTAAGGCTCACGATCCATGGCCGATTGGAAAATTGGCACTGTTTTCGTCAAACTTGCGGTTGTGAGCAACTGCTGAATTTTCCGGCCATGGAAAATTGCTTGGTTGGAAGTCATGGCATGGCTGTTCAACCTGTTTGTAAGAAATTGAAGAGACCGTTCCCTGAGGTCGAGGATATGGAATTTGGACCAGGCGAAGAGACTTGTGCTGGGACCAAGGGGACTAGGATTCTCCAATTTTGGGTGCTGTGGGTCTCCACGGAGCCGCCTCCTTCTGAACCTGCCATATCCTGTGAAAATTCGTTAGCCTCTGAAAGAAAGCCCCACCTTTGTTCTTTTCTTCTTCCTATTGCTATTTAA

Protein sequence

MLRLTIHGRLENWHCFRQTCGCEQLLNFPAMENCLVGSHGMAVQPVCKKLKRPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVSTEPPPSEPAISCENSLASERKPHLCSFLLPIAI*
Homology
[Close]
BLAST of CSPI06G14480 vs. ExPASy TrEMBL
Match: A0A0A0KCA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190440 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.9e-40
Identity = 81/108 (75.00%), Postives = 83/108 (76.85%), Query Frame = 0 

Query: 1   MLRLTIHGRLENWHCFRQTCGCEQLLNFPAMENCLVGSHGMAVQPVC------------- 60
           MLRLTIHGRLENWHC RQTCGCEQLLNFPAMENCLVGSHGMAVQPV              
Sbjct: 22  MLRLTIHGRLENWHCLRQTCGCEQLLNFPAMENCLVGSHGMAVQPVYADANPYALKVTYR 81

Query: 61  --------KKLKRPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 88
                    K ++PFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST
Sbjct: 82  FGMSKQKDNKPQKPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 129

[Close]
BLAST of CSPI06G14480 vs. NCBI nr
Match: KGN47177.2 (hypothetical protein Csa_020828 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 4.9e-44
Identity = 86/99 (86.87%), Postives = 86/99 (86.87%), Query Frame = 0 

Query: 1  MLRLTIHGRLENWHCFRQTCGCEQLLNFPAMENCLVGSHGMAVQPVCKKLK--------- 60
          MLRLTIHGRLENWHC RQTCGCEQLLNFPAMENCLVGSHGMAVQPVCKKLK         
Sbjct: 1  MLRLTIHGRLENWHCLRQTCGCEQLLNFPAMENCLVGSHGMAVQPVCKKLKSFDDFARKL 60

Query: 61 ---RPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 88
             RPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST
Sbjct: 61 EVLRPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 99

[Close]
BLAST of CSPI06G14480 vs. NCBI nr
Match: KAG7010553.1 (hypothetical protein SDJN02_27347 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-17
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 0 

Query: 52  RPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVSTEPPPSEPAISCENSLASERKPHLC 111
           + +PEVE MEFGPG+ET +GTK TRI   WVLWVSTEPPPSEP+I+CE SLA+E KPHL 
Sbjct: 2   KTYPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACETSLAAEGKPHLF 61

Query: 112 SFL 115
            FL
Sbjct: 62  PFL 64

[Close]
BLAST of CSPI06G14480 vs. NCBI nr
Match: KAG6570707.1 (Protein TRM32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 3.8e-12
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 54  FPEVEDMEFGPGEETCAGTKGTRILQFWVLWVSTEPPPSEPAISCENS 102
           +PEVE MEFGPG+ET +GTK TRI   WVLWVSTEPPPSEP+I+CE S
Sbjct: 30  YPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACETS 77

[Close]
BLAST of CSPI06G14480 vs. NCBI nr
Match: XP_031743531.1 (uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus] >XP_031743532.1 uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 60 MEFGPGEETCAGTKGTRILQFWVLWVST 88
          MEFGPGEETCAGTKGTRILQFWVLWVST
Sbjct: 1  MEFGPGEETCAGTKGTRILQFWVLWVST 28

[Close]
BLAST of CSPI06G14480 vs. NCBI nr
Match: KAE8649779.1 (hypothetical protein Csa_012265 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-07
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 56  EVEDMEFGPGEETCAGTKGTRILQFWVLWVSTEPPPSEPAISCE 100
           E+E MEFGPG E  + T  TRI Q WVLW S EPPPS+PAI+CE
Sbjct: 56  EIEVMEFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCE 99

The following BLAST results are available for this feature:
BLAST of CSPI06G14480 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G14480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCA17.9e-4075.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190440 PE=4 SV=1[more]
BLAST of CSPI06G14480 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47177.24.9e-4486.87hypothetical protein Csa_020828 [Cucumis sativus][more]
KAG7010553.12.3e-1771.43hypothetical protein SDJN02_27347 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6570707.13.8e-1275.00Protein TRM32, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_031743531.11.3e-07100.00uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus] >XP_031743532.... [more]
KAE8649779.12.8e-0765.91hypothetical protein Csa_012265 [Cucumis sativus][more]
BLAST of CSPI06G14480 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G14480.1CSPI06G14480.1mRNA