CSPI06G14440 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G14440
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 12662140 .. 12662418 (+)
RNA-Seq ExpressionCSPI06G14440
SyntenyCSPI06G14440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTGGATAGGCATTCCGCTTTTGACTTTTCTATCATTGGATTGAACTCGAAGGAAATGCCTCGATCATGGGAACTTGTTTTCAAGCTAAGGTCCACATGTACGTCCCAATCAAGCGGGCAGAAACCACCATTTCAATGGAGGGGAGCGGAGGAAAGGAATCAAGAATTAAAGGGACGGCTCTCTGTCGGCGGCTCAAAACTCTCCGGCGAGCGAGCCGTCAATCGACTGGCAAGTGGCAAAGGTCAAGTTGCGATAGCCGCTCTGTTGACTTGA

mRNA sequence

ATGGGATTGGATAGGCATTCCGCTTTTGACTTTTCTATCATTGGATTGAACTCGAAGGAAATGCCTCGATCATGGGAACTTGTTTTCAAGCTAAGGTCCACATGTACGTCCCAATCAAGCGGGCAGAAACCACCATTTCAATGGAGGGGAGCGGAGGAAAGGAATCAAGAATTAAAGGGACGGCTCTCTGTCGGCGGCTCAAAACTCTCCGGCGAGCGAGCCGTCAATCGACTGGCAAGTGGCAAAGGTCAAGTTGCGATAGCCGCTCTGTTGACTTGA

Coding sequence (CDS)

ATGGGATTGGATAGGCATTCCGCTTTTGACTTTTCTATCATTGGATTGAACTCGAAGGAAATGCCTCGATCATGGGAACTTGTTTTCAAGCTAAGGTCCACATGTACGTCCCAATCAAGCGGGCAGAAACCACCATTTCAATGGAGGGGAGCGGAGGAAAGGAATCAAGAATTAAAGGGACGGCTCTCTGTCGGCGGCTCAAAACTCTCCGGCGAGCGAGCCGTCAATCGACTGGCAAGTGGCAAAGGTCAAGTTGCGATAGCCGCTCTGTTGACTTGA

Protein sequence

MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKGRLSVGGSKLSGERAVNRLASGKGQVAIAALLT*
Homology
[Close]
BLAST of CSPI06G14440 vs. ExPASy TrEMBL
Match: A0A0A0KE89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190400 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.5e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKG 60
          MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKG
Sbjct: 1  MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKG 60

Query: 61 RLSVGGSKLSGERAVNRLASGKGQVAIAALLT 93
          RLSVGGSKLSGERAVNRLASGKGQVAIAALLT
Sbjct: 61 RLSVGGSKLSGERAVNRLASGKGQVAIAALLT 92

[Close]
BLAST of CSPI06G14440 vs. ExPASy TrEMBL
Match: A0A5D3DK92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G001090 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.5e-35
Identity = 80/92 (86.96%), Postives = 84/92 (91.30%), Query Frame = 0 

Query: 1  MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKG 60
          MGLDRHSAFDFSII LNSKEMPRSWELVFKLRST TSQSSGQKPPFQW  AE+RN+ELKG
Sbjct: 1  MGLDRHSAFDFSIIRLNSKEMPRSWELVFKLRSTRTSQSSGQKPPFQWSAAEQRNRELKG 60

Query: 61 RLSVGGSKLSGERAVNRLASGKGQVAIAALLT 93
           LS+GGSK SGERAV R+ASGKGQVAIA LLT
Sbjct: 61 PLSIGGSKFSGERAVVRVASGKGQVAIAYLLT 92

[Close]
BLAST of CSPI06G14440 vs. NCBI nr
Match: KGN47149.1 (hypothetical protein Csa_021063 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 9.3e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKG 60
          MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKG
Sbjct: 1  MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKG 60

Query: 61 RLSVGGSKLSGERAVNRLASGKGQVAIAALLT 93
          RLSVGGSKLSGERAVNRLASGKGQVAIAALLT
Sbjct: 61 RLSVGGSKLSGERAVNRLASGKGQVAIAALLT 92

[Close]
BLAST of CSPI06G14440 vs. NCBI nr
Match: TYK24017.1 (hypothetical protein E5676_scaffold250G001090 [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 9.3e-35
Identity = 80/92 (86.96%), Postives = 84/92 (91.30%), Query Frame = 0 

Query: 1  MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKG 60
          MGLDRHSAFDFSII LNSKEMPRSWELVFKLRST TSQSSGQKPPFQW  AE+RN+ELKG
Sbjct: 1  MGLDRHSAFDFSIIRLNSKEMPRSWELVFKLRSTRTSQSSGQKPPFQWSAAEQRNRELKG 60

Query: 61 RLSVGGSKLSGERAVNRLASGKGQVAIAALLT 93
           LS+GGSK SGERAV R+ASGKGQVAIA LLT
Sbjct: 61 PLSIGGSKFSGERAVVRVASGKGQVAIAYLLT 92

[Close]
BLAST of CSPI06G14440 vs. NCBI nr
Match: KAG6570704.1 (hypothetical protein SDJN03_29619, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 7.0e-06
Identity = 43/89 (48.31%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 2   GLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKGR 61
           GLDR  +FDFSIIGLNSK+      L     ST  SQSS Q PP      E RN ELKG 
Sbjct: 25  GLDRRYSFDFSIIGLNSKKYLDHGSLFSIPWSTRASQSSAQNPPNSME-LERRNPELKGP 84

Query: 62  LSVGGSKL---SGERAVNRLASGKGQVAI 88
           L +GGS+    + ERA  RL+  K +  I
Sbjct: 85  LFLGGSRAPSPASERAAARLSKVKWRYQI 112

The following BLAST results are available for this feature:
BLAST of CSPI06G14440 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G14440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE894.5e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190400 PE=4 SV=1[more]
A0A5D3DK924.5e-3586.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CSPI06G14440 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47149.19.3e-43100.00hypothetical protein Csa_021063 [Cucumis sativus][more]
TYK24017.19.3e-3586.96hypothetical protein E5676_scaffold250G001090 [Cucumis melo var. makuwa][more]
KAG6570704.17.0e-0648.31hypothetical protein SDJN03_29619, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CSPI06G14440 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G14440.1CSPI06G14440.1mRNA