CSPI06G13460 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G13460
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	SWR1 complex subunit 6
Location	Chr6: 11970704 .. 11973262 (-)
RNA-Seq Expression	CSPI06G13460
Synteny	CSPI06G13460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGGTGAACTCCACGCTACACTTTGGCACTCGGCCACCGTAGGCCTAACTTTCCAAATTAAATAACGCCGGTCGCCGGAATTGACAACAGTCAACATTCACCGGAAGTCCATCCACTCTAATTCCCCCACTCTTCTTCTTCTCCGACTCGTAGGGTTTGGAACTTTCTCTCTTTCGCTCATTTCAGTTTCGTTCTTACTGCTCAAAATCAAAGTATTATGCGAAACCTAGGGTTTTTTTTTTTTTTTCTTTTCTTACTGCAACTCTTCTATTCTGATTTCTTATGAGAATTCTCTAATCGCGCTAATTTTAATCGATTCGTCTTTTCCATTCAAGGGTCTGAGTGTGCGGTTGTAGCTATCAATGGATGATGATTCTACGAATCCATTCCGACGTATGTCGAGCCGTACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCCAGCAGCGACAACCGTACGCAGGTTTGTTTGGTGAACTAGATTTTGCTTCTTTGTTGTGAGCTACTGGTGCTGTAATTGATTAGTTTAAGGTTGTACTCTATATTTACAATGTACGTTTTTAATTTTGGTTTTTCTGCTCTTCAGGCAGCACTTGCTCGTCTAGAGGCATTGGAAAATGACAATGCGGGAGTGGAAGTAGTCGAAAACATTGACGATGAGGATGCTTCTCTCGATGATGATGATCAAGGTTATTCATTCATCTTCTTTCAACTTTGGCCTTTTTCTTGTAGAGTGCTCTCTTCAATTACATCAATCAAATGTTAGACATCTAATATTTTCCCATTTTTTTCTGTTGCACTGATTATTCCCATCATCTAATCCAATGTGAAAGTAAGCCAGAATTGCTTTTGGTTCTTCGATTCCTGTTACCTGTTAAGCCTATTGACTTTGGTGTATGGTCGAGAAAATTTTCGTCTTCTCTGTCTTTAGAAATTCTGTAAAAAAACCAAGATGGCCAGCAACAGAACTCAGATATCGCATTGGCCATGGAGTTTTAGTACTCGTTAATTGCCCGATTTTCTGCTATGGTACCTGGATTACAATCAGCCACTGAGGGTGAGATTCCAGGTTCATTCGTATGGAATTTTTTAGGGATTTTACAATTCCTGAGTGTTGGGATGATAAATGGAGAAGGATGGAATCTGCATTTGGCAATGCAGCTTTCAGAACTAGAATTTGGTGATTGGGTTGGGCTTCCTTTCTACAAATTCTTGCCCACCTACTTGGCAAGAAGATAGGTGGAGAAGTAATTTAAAAGACTCTGGTGATATGATTCTCTGAATTCTTGGACAAGTTTCAGCTGATATTCGCTTTCCTTATTAGTCTGAACTGGTGGCTTTTGTGTACGATTGGTGCTGAAAAGACCAAGATCATGTTTTTCCAAGGGGTGCATAGCTTATAATTGTTGCACGGGAGTGTGGTTCGAGTTTGTGTCTTTCTCATAGTTCCTACGACAATATCACCAAGCCAACTGTTGTGTAGTCATCCTATTTGGTGAAGAGCAAAGTTGGTGTGGGCTAATTGCTGTCGACGCTATCCCATAGCATTTTGGGAAGGAATAATCCATAGGATTTTCATAGGAAAGTGTCACAATTTTGGGGAGATATGATATTTCATCAGTTTTTGGTTATCGTCTTGGCGAACTCTAATCGAATCATTTGAAATTGTCCTCTCTTTCTTGTTTTGTTTGTCCAACCTAATTTCTGTTGTTTATAGGCTCCACATGCTTCAAAATCGGTTGATATATCATCTCTTTCATTCCTCCTTTTGTACTCTTGTGTTTAGTTTCGTATAGAGAAATCACTTTAAAATGAAATTCATTTCCAAGGAATAATAGAACCCGTCAACTTCAATTCTTGCATTGATTCAAACAGATTGAATTATACTCTTCTATACCTTAGAGTGTTGTTTGGTATTTAGTGTCACTAATCTTTACCCCTTTTTAACCCCAATGCAGCATACATAAAGCGGCAATCAAAGGGCACTAAACGGAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAAGCTCCCAAAACTTTTATGGAGCTTCTGCACGAGGTTTGTATCAGAGCTTCTTCTACTTCGTGGCCTTATTAGATTGCAATAAAAAGTTTGTTTTGATGTTGAGCTACAATAAAAACAGGCAAATTTGGAGTCATTGCCTCCACATGTTCCATCATACTTGAAGGCGGCCGTTGGACCTCCAAGCTCTACCTCACGCCGGCATTTCTGCACAGTTTGCGGTTTTGCTGCGAGCTACACATGCATAAGGTGTGGAATCCGCTTTTGTTCATCTCGTTGCCAGAATATACATAACGATACTCGTTGTTTGAAATTTGTTGCCTAATAGGTTGATAGCGATAGGCAGGTGGATAAAGCCACTCGAATTTTGTAGATTATATTGAACTCACTACTCAAATCTCTGTAAATTATAATGTAGTCTTAATACTCATTTTTCTCTTCATGGTTAAGCCTCACATCTTGTTTCCTTGTGTGTTTGTGGTACACTACATGAATTATGCTTCTTCTCACGAATCTATTTGGAATGACC

mRNA sequence

CCGGTGAACTCCACGCTACACTTTGGCACTCGGCCACCGTAGGCCTAACTTTCCAAATTAAATAACGCCGGTCGCCGGAATTGACAACAGTCAACATTCACCGGAAGTCCATCCACTCTAATTCCCCCACTCTTCTTCTTCTCCGACTCGTAGGGGTCTGAGTGTGCGGTTGTAGCTATCAATGGATGATGATTCTACGAATCCATTCCGACGTATGTCGAGCCGTACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCCAGCAGCGACAACCGTACGCAGGCAGCACTTGCTCGTCTAGAGGCATTGGAAAATGACAATGCGGGAGTGGAAGTAGTCGAAAACATTGACGATGAGGATGCTTCTCTCGATGATGATGATCAAGCATACATAAAGCGGCAATCAAAGGGCACTAAACGGAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAAGCTCCCAAAACTTTTATGGAGCTTCTGCACGAGGCAAATTTGGAGTCATTGCCTCCACATGTTCCATCATACTTGAAGGCGGCCGTTGGACCTCCAAGCTCTACCTCACGCCGGCATTTCTGCACAGTTTGCGGTTTTGCTGCGAGCTACACATGCATAAGGTGTGGAATCCGCTTTTGTTCATCTCGTTGCCAGAATATACATAACGATACTCGTTGTTTGAAATTTGTTGCCTAATAGGTTGATAGCGATAGGCAGGTGGATAAAGCCACTCGAATTTTGTAGATTATATTGAACTCACTACTCAAATCTCTGTAAATTATAATGTAGTCTTAATACTCATTTTTCTCTTCATGGTTAAGCCTCACATCTTGTTTCCTTGTGTGTTTGTGGTACACTACATGAATTATGCTTCTTCTCACGAATCTATTTGGAATGACC

Coding sequence (CDS)

ATGGATGATGATTCTACGAATCCATTCCGACGTATGTCGAGCCGTACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCCAGCAGCGACAACCGTACGCAGGCAGCACTTGCTCGTCTAGAGGCATTGGAAAATGACAATGCGGGAGTGGAAGTAGTCGAAAACATTGACGATGAGGATGCTTCTCTCGATGATGATGATCAAGCATACATAAAGCGGCAATCAAAGGGCACTAAACGGAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAAGCTCCCAAAACTTTTATGGAGCTTCTGCACGAGGCAAATTTGGAGTCATTGCCTCCACATGTTCCATCATACTTGAAGGCGGCCGTTGGACCTCCAAGCTCTACCTCACGCCGGCATTTCTGCACAGTTTGCGGTTTTGCTGCGAGCTACACATGCATAAGGTGTGGAATCCGCTTTTGTTCATCTCGTTGCCAGAATATACATAACGATACTCGTTGTTTGAAATTTGTTGCCTAA

Protein sequence

MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDEDASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA*

Homology

[Close]

BLAST of CSPI06G13460 vs. ExPASy Swiss-Prot
Match: Q9FHW2 (SWR1 complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=SWC6 PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 8.5e-61
Identity = 124/173 (71.68%), Postives = 148/173 (85.55%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           M+++ +N  RR+S+RTRKVA KM AAL S+DNRTQAA+ARLEALENDN  +EV++  DDE
Sbjct: 1   MEEEMSN--RRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVIDLNDDE 60

Query: 61  DASLD-DDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYL 120
           +ASLD DDD  Y+ K+Q KG+KRKTRQAKALEA+KAPK+F+ELL EANLESLP HVP+YL
Sbjct: 61  EASLDEDDDLGYLQKKQHKGSKRKTRQAKALEARKAPKSFLELLQEANLESLPSHVPTYL 120

Query: 121 KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           KAAVGPPSS+SRR+FC+VCG+ A Y C  CG+RFCS RCQNIH DTRC KFVA
Sbjct: 121 KAAVGPPSSSSRRYFCSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQKFVA 171

[Close]

BLAST of CSPI06G13460 vs. ExPASy Swiss-Prot
Match: Q54NW0 (Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=znhit1 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.8e-16
Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 0


Query: 13  SSRTRKVAPKMVAALASSDNRT---QAALARLEALENDNAGVEVVENIDDEDASLDDDDQ 72
           SS+ +    K     +  D R    +   ARLE+L++DN    +    D+ED   +DD+ 
Sbjct: 14  SSKRKSQISKRYRVTSEEDRRNLKEKVISARLESLDDDNEQQPIGSRGDEEDNDYNDDEN 73

Query: 73  AYIKRQSKGTKRK--TRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSS 132
             +       KR    R+ K  E K     F ++L ++ LE+ P HVP+Y+ +    PS 
Sbjct: 74  EIVYTTPVNKKRLFIAREKKKNEKKSMNLNFNDVLEKSYLETFPDHVPTYI-SVQSKPSI 133

Query: 133 TSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRC 167
              RHFC++CG+  +YTC +C  R+CS +C N HN+TRC
Sbjct: 134 FPPRHFCSICGYIGAYTCKQCSSRYCSIKCFNYHNETRC 171

[Close]

BLAST of CSPI06G13460 vs. ExPASy Swiss-Prot
Match: Q8R331 (Zinc finger HIT domain-containing protein 1 OS=Mus musculus OX=10090 GN=Znhit1 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.8e-14
Identity = 56/141 (39.72%), Postives = 70/141 (49.65%), Query Frame = 0


Query: 40  RLEALENDNAGVEVVENIDDEDASL-----------DDDDQAYIKRQSKGTKRKTRQAKA 99
           +LEALENDN         DD  A L           DD D    K++++G   K R    
Sbjct: 31  QLEALENDNFQ-------DDPHAGLPQLGKRLPQFDDDADTGKKKKKTRGDHFKLR---- 90

Query: 100 LEAKKAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRC 159
                  K F  LL E NL +     P+YL A  GPP S  +R FC VCGF + YTC+ C
Sbjct: 91  -----FRKNFQALLEEQNLSA--SEGPNYLTACAGPP-SRPQRPFCAVCGFPSPYTCVSC 150

Query: 160 GIRFCSSRCQNIHNDTRCLKF 170
           G R+C+ RC   H +TRCLK+
Sbjct: 151 GARYCTVRCLGTHQETRCLKW 152

[Close]

BLAST of CSPI06G13460 vs. ExPASy Swiss-Prot
Match: Q24JY4 (Zinc finger HIT domain-containing protein 1 OS=Bos taurus OX=9913 GN=ZNHIT1 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 61/171 (35.67%), Postives = 80/171 (46.78%), Query Frame = 0


Query: 10  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDEDASL----- 69
           ++ S R++    + V   A+   R      +LEALENDN         DD  A L     
Sbjct: 4   KKTSVRSQDPGQRRVLDRAARQRRIN---RQLEALENDNFQ-------DDPHAGLPQLGK 63

Query: 70  ------DDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYL 129
                 DD D    K++++G   K R           K F  LL E NL       P+YL
Sbjct: 64  RLPQFDDDADTGKKKKKTRGDHFKLR---------FRKNFQALLEEQNLS--VAEGPNYL 123

Query: 130 KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKF 170
            A  GPP S  +R FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Sbjct: 124 TACAGPP-SRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152

[Close]

BLAST of CSPI06G13460 vs. ExPASy Swiss-Prot
Match: O43257 (Zinc finger HIT domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNHIT1 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 61/171 (35.67%), Postives = 80/171 (46.78%), Query Frame = 0


Query: 10  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDEDASL----- 69
           ++ S R++    + V   A+   R      +LEALENDN         DD  A L     
Sbjct: 4   KKTSVRSQDPGQRRVLDRAARQRRIN---RQLEALENDNFQ-------DDPHAGLPQLGK 63

Query: 70  ------DDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYL 129
                 DD D    K++++G   K R           K F  LL E NL       P+YL
Sbjct: 64  RLPQFDDDADTGKKKKKTRGDHFKLR---------FRKNFQALLEEQNLS--VAEGPNYL 123

Query: 130 KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKF 170
            A  GPP S  +R FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Sbjct: 124 TACAGPP-SRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152

[Close]

BLAST of CSPI06G13460 vs. ExPASy TrEMBL
Match: A0A0A0KH15 (HIT-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181510 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.9e-87
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60

Query: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120
           DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA
Sbjct: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120

Query: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of CSPI06G13460 vs. ExPASy TrEMBL
Match: A0A1S3CKL9 (SWR1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103501880 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.2e-86
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAG+EVVENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60

Query: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120
           DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSY KA
Sbjct: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYFKA 120

Query: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of CSPI06G13460 vs. ExPASy TrEMBL
Match: A0A6J1FTL5 (SWR1 complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111448349 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 9.1e-82
Identity = 161/172 (93.60%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSYLK
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of CSPI06G13460 vs. ExPASy TrEMBL
Match: A0A6J1JHH9 (SWR1 complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111484534 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.6e-81
Identity = 160/172 (93.02%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSY+K
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYIK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of CSPI06G13460 vs. ExPASy TrEMBL
Match: A0A6J1D2Z0 (SWR1 complex subunit 6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017095 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.7e-81
Identity = 161/172 (93.60%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAG+E+VENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 60

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDDD AYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPP+VPSYLK
Sbjct: 61  DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of CSPI06G13460 vs. NCBI nr
Match: XP_004143171.1 (SWR1 complex subunit 6 [Cucumis sativus] >XP_011657114.1 SWR1 complex subunit 6 [Cucumis sativus] >XP_031743058.1 SWR1 complex subunit 6 [Cucumis sativus] >KGN47046.1 hypothetical protein Csa_020987 [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 3.9e-87
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60

Query: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120
           DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA
Sbjct: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120

Query: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of CSPI06G13460 vs. NCBI nr
Match: XP_008463835.1 (PREDICTED: SWR1 complex subunit 6 [Cucumis melo] >XP_008463836.1 PREDICTED: SWR1 complex subunit 6 [Cucumis melo] >XP_008463837.1 PREDICTED: SWR1 complex subunit 6 [Cucumis melo])

HSP 1 Score: 328.9 bits (842), Expect = 2.5e-86
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAG+EVVENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60

Query: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120
           DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSY KA
Sbjct: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYFKA 120

Query: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of CSPI06G13460 vs. NCBI nr
Match: XP_038901863.1 (SWR1 complex subunit 6 [Benincasa hispida] >XP_038901864.1 SWR1 complex subunit 6 [Benincasa hispida])

HSP 1 Score: 318.9 bits (816), Expect = 2.6e-83
Identity = 166/172 (96.51%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDD+TNPFRRMSSR RKVAPKMVAALASSDNRTQAALARLEALENDNAGVE VENIDDE
Sbjct: 1   MDDDATNPFRRMSSRNRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEAVENIDDE 60

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of CSPI06G13460 vs. NCBI nr
Match: XP_023512985.1 (SWR1 complex subunit 6 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.8 bits (800), Expect = 1.9e-81
Identity = 161/172 (93.60%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 21  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 80

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSYLK
Sbjct: 81  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLK 140

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 141 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 192

[Close]

BLAST of CSPI06G13460 vs. NCBI nr
Match: XP_022943643.1 (SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943644.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943645.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943647.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943648.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_023512986.1 SWR1 complex subunit 6 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023512987.1 SWR1 complex subunit 6 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.8 bits (800), Expect = 1.9e-81
Identity = 161/172 (93.60%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSYLK
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of CSPI06G13460 vs. TAIR 10
Match: AT5G37055.1 (HIT-type Zinc finger family protein )

HSP 1 Score: 234.6 bits (597), Expect = 6.1e-62
Identity = 124/173 (71.68%), Postives = 148/173 (85.55%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           M+++ +N  RR+S+RTRKVA KM AAL S+DNRTQAA+ARLEALENDN  +EV++  DDE
Sbjct: 1   MEEEMSN--RRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVIDLNDDE 60

Query: 61  DASLD-DDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYL 120
           +ASLD DDD  Y+ K+Q KG+KRKTRQAKALEA+KAPK+F+ELL EANLESLP HVP+YL
Sbjct: 61  EASLDEDDDLGYLQKKQHKGSKRKTRQAKALEARKAPKSFLELLQEANLESLPSHVPTYL 120

Query: 121 KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           KAAVGPPSS+SRR+FC+VCG+ A Y C  CG+RFCS RCQNIH DTRC KFVA
Sbjct: 121 KAAVGPPSSSSRRYFCSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQKFVA 171

The following BLAST results are available for this feature:

BLAST of CSPI06G13460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHW2	8.5e-61	71.68	SWR1 complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=SWC6 PE=1 SV=1	[more]
Q54NW0	3.8e-16	33.96	Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum ...	[more]
Q8R331	7.8e-14	39.72	Zinc finger HIT domain-containing protein 1 OS=Mus musculus OX=10090 GN=Znhit1 P...	[more]
Q24JY4	1.1e-12	35.67	Zinc finger HIT domain-containing protein 1 OS=Bos taurus OX=9913 GN=ZNHIT1 PE=2...	[more]
O43257	1.1e-12	35.67	Zinc finger HIT domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNHIT1 PE...	[more]

BLAST of CSPI06G13460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH15	1.9e-87	100.00	HIT-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181510 PE...	[more]
A0A1S3CKL9	1.2e-86	98.83	SWR1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103501880 PE=4 SV=1	[more]
A0A6J1FTL5	9.1e-82	93.60	SWR1 complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111448349 PE=4 SV=1	[more]
A0A6J1JHH9	1.6e-81	93.02	SWR1 complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111484534 PE=4 SV=1	[more]
A0A6J1D2Z0	7.7e-81	93.60	SWR1 complex subunit 6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017095...	[more]

BLAST of CSPI06G13460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143171.1	3.9e-87	100.00	SWR1 complex subunit 6 [Cucumis sativus] >XP_011657114.1 SWR1 complex subunit 6 ...	[more]
XP_008463835.1	2.5e-86	98.83	PREDICTED: SWR1 complex subunit 6 [Cucumis melo] >XP_008463836.1 PREDICTED: SWR1...	[more]
XP_038901863.1	2.6e-83	96.51	SWR1 complex subunit 6 [Benincasa hispida] >XP_038901864.1 SWR1 complex subunit ...	[more]
XP_023512985.1	1.9e-81	93.60	SWR1 complex subunit 6 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022943643.1	1.9e-81	93.60	SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943644.1 SWR1 complex subunit...	[more]

BLAST of CSPI06G13460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37055.1	6.1e-62	71.68	HIT-type Zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 27..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR13093:SF1	BNACNNG31940D PROTEIN	coord: 1..171
None	No IPR available	SUPERFAMILY	144232	HIT/MYND zinc finger-like	coord: 129..163
IPR007529	Zinc finger, HIT-type	PFAM	PF04438	zf-HIT	coord: 130..158 e-value: 1.3E-10 score: 40.9
IPR007529	Zinc finger, HIT-type	PROSITE	PS51083	ZF_HIT	coord: 134..166 score: 9.360636
IPR039723	Vps71/ZNHIT1	PANTHER	PTHR13093	ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1	coord: 1..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G13460.1	CSPI06G13460.1	mRNA
CSPI06G13460.2	CSPI06G13460.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0043486	histone exchange
biological_process	GO:0048638	regulation of developmental growth
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0006338	chromatin remodeling
cellular_component	GO:0000812	Swr1 complex
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0031491	nucleosome binding