CSPI06G12990 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G12990
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 11510445 .. 11510780 (-)
RNA-Seq ExpressionCSPI06G12990
SyntenyCSPI06G12990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGTAAAAAAGAAAGAAAAAAAAAGGCTTCGAAAAGGGGCCCACAAGAGAGGAGTTTCAATGAGGAACCTATTGGAAATAAAGCGGGCCGGATTTGGCCGAAACTGAAAATGATCCAGGATTGGGACGCGAGAGGGGAAGGGTCCCGGACAAGTGGAGATGCCATCTGTCGAAAGAATGATCCAATAGTTACCGGACACGTTTCACGAGAGTTCGGTGTCCACAAGTTTGACTGTCCCGAGTGGACCCACTGCGACTGGGTTTTATTTAACGCCAAACTGACAACGTGTGCCCCGTTTTGTTGGGGCTCACTATTCCCCCCCCCTTCATAA

mRNA sequence

ATGAATTGTAAAAAAGAAAGAAAAAAAAAGGCTTCGAAAAGGGGCCCACAAGAGAGGAGTTTCAATGAGGAACCTATTGGAAATAAAGCGGGCCGGATTTGGCCGAAACTGAAAATGATCCAGGATTGGGACGCGAGAGGGGAAGGGTCCCGGACAAGTGGAGATGCCATCTGTCGAAAGAATGATCCAATAGTTACCGGACACGTTTCACGAGAGTTCGGTGTCCACAAGTTTGACTGTCCCGAGTGGACCCACTGCGACTGGGTTTTATTTAACGCCAAACTGACAACGTGTGCCCCGTTTTGTTGGGGCTCACTATTCCCCCCCCCTTCATAA

Coding sequence (CDS)

ATGAATTGTAAAAAAGAAAGAAAAAAAAAGGCTTCGAAAAGGGGCCCACAAGAGAGGAGTTTCAATGAGGAACCTATTGGAAATAAAGCGGGCCGGATTTGGCCGAAACTGAAAATGATCCAGGATTGGGACGCGAGAGGGGAAGGGTCCCGGACAAGTGGAGATGCCATCTGTCGAAAGAATGATCCAATAGTTACCGGACACGTTTCACGAGAGTTCGGTGTCCACAAGTTTGACTGTCCCGAGTGGACCCACTGCGACTGGGTTTTATTTAACGCCAAACTGACAACGTGTGCCCCGTTTTGTTGGGGCTCACTATTCCCCCCCCCTTCATAA

Protein sequence

MNCKKERKKKASKRGPQERSFNEEPIGNKAGRIWPKLKMIQDWDARGEGSRTSGDAICRKNDPIVTGHVSREFGVHKFDCPEWTHCDWVLFNAKLTTCAPFCWGSLFPPPS*
Homology
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BLAST of CSPI06G12990 vs. NCBI nr
Match: KAE8646928.1 (hypothetical protein Csa_020730 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 0 

Query: 1   MNCKKERK-KKASKRGPQERSFNEEPIGNKAGRIWPKLKMIQDWDARGEGSRTSGDAICR 60
           MNCKK++K KKASKRGPQERSFNEEP GNKAGRIWPKLKMIQDWDARGEGSRTSGDAICR
Sbjct: 1   MNCKKKKKEKKASKRGPQERSFNEEPGGNKAGRIWPKLKMIQDWDARGEGSRTSGDAICR 60

Query: 61  KNDPIVTGHVSREFGVHKFDCPEWTHCDWVLFNAKLTTCAPFCWGSLFPP 110
           KNDPIV GHVSREFGVHKFDCPEWTHCDWVLFNAKLTTCAPFCWG LFPP
Sbjct: 61  KNDPIVIGHVSREFGVHKFDCPEWTHCDWVLFNAKLTTCAPFCWGPLFPP 110

The following BLAST results are available for this feature:
BLAST of CSPI06G12990 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G12990 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G12990 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646928.12.3e-5694.55hypothetical protein Csa_020730 [Cucumis sativus][more]
BLAST of CSPI06G12990 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G12990.1CSPI06G12990.1mRNA