CSPI06G12340 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G12340
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	XS domain-containing protein
Location	Chr6: 10803828 .. 10805471 (+)
RNA-Seq Expression	CSPI06G12340
Synteny	CSPI06G12340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGCCATTTATTTTGGCAAAGCCTCTTTATCTTGGTGCACATGTTTCAGGTTTCTGTATATATATTGCTTGCTAAATTTACTCGCATTTTTATCAGCAAGTCCAAGGAGTTTGTAGATGCACTAAGCTTACCACAACATGCCTCCCGGACGCTGGAAGGATCTAGGGCAGAACACTTGGGTCTTCATAAAGCACTTTGTTGGCTCATGGGATGGAGCAGTGAAATAGCGCCAAGTGGTCTATGGGTACGAATGATATTACCTCCTGTAGAAGTACTTGCTTTGAAGGAGGATCTCATTATATGGCCCTCCGTTCTTATCATTCATAATAGTTCTATTGCAATTGATAAACGATATGAAGGGGTAGCCATAAGCTGTGAGAAGCTTGAGGCTGCTGTAAGAGGTAAACCCTGTCTTTGCTGTAACTATGAATTGCCCCGTCTTTCCATCTAATTTTCAAGTTGCATGTTGATGGCACATCATTCAAGAGTTCAAGTCGTCTTCTCAAGTTGACCAAAGATGTGGTCTATAGACATGCTCAATATATTTTTAAAATAGTGCTCCCTTGGTTGTTTTTATGTTATCGGAGCTGGAATCAATCAATTATATAGATGGTTTTTTCTTTGAGATACTTACAACTCACACCTCTTTGTCTTCCCTATTTTGCAAACTATATTATTTTATTTTATTTTTAGAAAAAATTCATAAATACTCATGTGAATTCCAAAATCTAAGTAACGGTAAATTTCGGTTAAATATTGCAGTTAAATTTAACGGAATTGGTCAGTGGACTAAATTCTAGTTCTAGGTTTGCTATGTGGATCTACGTTACTACAGTGGACTCACATGAGAGTTTGATTTTTAAAGTACTCAAAGTATATGCATGTAACTCTTTTTCGTTAAATTGAAAATTTGATCTTTTTATAATTTAGAAAAAATTATTGCTTTTAAAAGTTAGAATTTTGTACTTTACTTTTGATAAAACCTTATAAATAGTCCTTATACTTTGATAGAATAGTCTTGCAAAGATTATTTCAAAAAGTTTTATCAAATCATAGAAACTAAATTCTAACTCTCTAAATCATTCGGACTAAATATTCAATTTAACAGTCTTTTTTCTTTTGTTTTGGTTACTACAGTCCTGTTAGATTAGTCTTCATCAACTCTGGTGAATTATGCATGTTTACCTTTGTTAATTTATTCGATAAAAGTTAAAAGCGTTATTGGTTGTTTAGTCTTTTGGTTTCACCATAGTATGAGTTTGACCCAAAACAAAATGAGCAAGCAATGGGTTGTGGAGGGAAGTTCAAAGTGGTACGTGGTAAAGCTGTAAACCAGAGTATTATGGTTGTAACTTTTGGTGCGATGTTTTATGGGTTGCAAGAAGCAGAAAGACTACACAACAACTTTGCAGATAAGAGTCACGGCAGGGACGAGTTCCATAAAATCAATTTGAGATGTCTCGTTCACAGCAACGTGGATATGCATAAAGCAACAGGAGCAAACACATTGGAGAGTGTACTTTATGACTACTTAGGCCTCGTCGGGGACTTGGATAAACTCGACTTTGAGACCAAGAAGAGATCTGTGGTGAGAAGCAAGAAAGAAATCCAAGCCATTGTGCATGCATCTCTTCAGTGT

mRNA sequence

ATGGATTGCCATTTATTTTGGCAAAGCCTCTTTATCTTGGTGCACATGTTTCAGGTTTCTGTATATATATTGCTTGCTAAATTTACTCGCATTTTTATCAGCAAGTCCAAGGAGTTTGTAGATGCACTAAGCTTACCACAACATGCCTCCCGGACGCTGGAAGGATCTAGGGCAGAACACTTGGGTCTTCATAAAGCACTTTGTTGGCTCATGGGATGGAGCAGTGAAATAGCGCCAAGTGGTCTATGGGTACGAATGATATTACCTCCTGTAGAAGTACTTGCTTTGAAGGAGGATCTCATTATATGGCCCTCCGTTCTTATCATTCATAATAGTTCTATTGCAATTGATAAACGATATGAAGGGGTAGCCATAAGCTGTGAGAAGCTTGAGGCTGCTGTAAGAGCAATGGGTTGTGGAGGGAAGTTCAAAGTGGTACGTGGTAAAGCTGTAAACCAGAGTATTATGGTTGTAACTTTTGGTGCGATGTTTTATGGGTTGCAAGAAGCAGAAAGACTACACAACAACTTTGCAGATAAGAGTCACGGCAGGGACGAGTTCCATAAAATCAATTTGAGATGTCTCGTTCACAGCAACGTGGATATGCATAAAGCAACAGGAGCAAACACATTGGAGAGTGTACTTTATGACTACTTAGGCCTCGTCGGGGACTTGGATAAACTCGACTTTGAGACCAAGAAGAGATCTGTGGTGAGAAGCAAGAAAGAAATCCAAGCCATTGTGCATGCATCTCTTCAGTGT

Coding sequence (CDS)

ATGGATTGCCATTTATTTTGGCAAAGCCTCTTTATCTTGGTGCACATGTTTCAGGTTTCTGTATATATATTGCTTGCTAAATTTACTCGCATTTTTATCAGCAAGTCCAAGGAGTTTGTAGATGCACTAAGCTTACCACAACATGCCTCCCGGACGCTGGAAGGATCTAGGGCAGAACACTTGGGTCTTCATAAAGCACTTTGTTGGCTCATGGGATGGAGCAGTGAAATAGCGCCAAGTGGTCTATGGGTACGAATGATATTACCTCCTGTAGAAGTACTTGCTTTGAAGGAGGATCTCATTATATGGCCCTCCGTTCTTATCATTCATAATAGTTCTATTGCAATTGATAAACGATATGAAGGGGTAGCCATAAGCTGTGAGAAGCTTGAGGCTGCTGTAAGAGCAATGGGTTGTGGAGGGAAGTTCAAAGTGGTACGTGGTAAAGCTGTAAACCAGAGTATTATGGTTGTAACTTTTGGTGCGATGTTTTATGGGTTGCAAGAAGCAGAAAGACTACACAACAACTTTGCAGATAAGAGTCACGGCAGGGACGAGTTCCATAAAATCAATTTGAGATGTCTCGTTCACAGCAACGTGGATATGCATAAAGCAACAGGAGCAAACACATTGGAGAGTGTACTTTATGACTACTTAGGCCTCGTCGGGGACTTGGATAAACTCGACTTTGAGACCAAGAAGAGATCTGTGGTGAGAAGCAAGAAAGAAATCCAAGCCATTGTGCATGCATCTCTTCAGTGT

Protein sequence

MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHASLQC

Homology

[Close]

BLAST of CSPI06G12340 vs. ExPASy TrEMBL
Match: A0A0A0KGN5 (XS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G151630 PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 7.3e-136
Identity = 249/254 (98.03%), Postives = 250/254 (98.43%), Query Frame = 0


Query: 1   MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEH 60
           MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEH
Sbjct: 1   MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEH 60

Query: 61  LGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRY 120
           LGLHKALCWLMGWSSEIAP+GLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRY
Sbjct: 61  LGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRY 120

Query: 121 EGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADK 180
           EGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADK
Sbjct: 121 EGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADK 180

Query: 181 SHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETKKRSVVRS 240
           SHGRDEFHKINLRCLV SNVDMHKATGANTLESV Y YLGLV DLDKLDFETKKRSVVRS
Sbjct: 181 SHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDFETKKRSVVRS 240

Query: 241 KKEIQAIVHASLQC 255
           KKEIQAIVHASLQC
Sbjct: 241 KKEIQAIVHASLQC 254

[Close]

BLAST of CSPI06G12340 vs. ExPASy TrEMBL
Match: A0A5A7SQC0 (XS domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00320 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.4e-99
Identity = 189/221 (85.52%), Postives = 199/221 (90.05%), Query Frame = 0


Query: 34  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEV 93
           SKSKEFVDALSL QHASRTLEGSRAEHLGLHKALCWLMGWSSE AP+GLWVR ILP  EV
Sbjct: 612 SKSKEFVDALSLSQHASRTLEGSRAEHLGLHKALCWLMGWSSETAPNGLWVRRILPLEEV 671

Query: 94  LALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQ 153
           LALKEDLIIWP VLIIHNSSIAIDK  +GVAISCE+LEA +R MGCGGK KVVRG+  NQ
Sbjct: 672 LALKEDLIIWPPVLIIHNSSIAIDKLSDGVAISCEELEAVIRGMGCGGKIKVVRGEPGNQ 731

Query: 154 SIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLES 213
           SIMVVTFGAMF GLQEAERLH +FADKSHGRDE HKINLR L+ SNVD+HKATGANTLES
Sbjct: 732 SIMVVTFGAMFSGLQEAERLHKSFADKSHGRDEVHKINLRHLIDSNVDLHKATGANTLES 791

Query: 214 VLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHASLQC 255
           VLY YLGL  DL KLDFETKKRSVV+SKKEIQAIV+ASLQC
Sbjct: 792 VLYGYLGLAEDLVKLDFETKKRSVVKSKKEIQAIVNASLQC 832

[Close]

BLAST of CSPI06G12340 vs. ExPASy TrEMBL
Match: A0A1S3C894 (uncharacterized protein LOC103497964 OS=Cucumis melo OX=3656 GN=LOC103497964 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.4e-99
Identity = 189/221 (85.52%), Postives = 199/221 (90.05%), Query Frame = 0


Query: 34  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEV 93
           SKSKEFVDALSL QHASRTLEGSRAEHLGLHKALCWLMGWSSE AP+GLWVR ILP  EV
Sbjct: 612 SKSKEFVDALSLSQHASRTLEGSRAEHLGLHKALCWLMGWSSETAPNGLWVRRILPLEEV 671

Query: 94  LALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQ 153
           LALKEDLIIWP VLIIHNSSIAIDK  +GVAISCE+LEA +R MGCGGK KVVRG+  NQ
Sbjct: 672 LALKEDLIIWPPVLIIHNSSIAIDKLSDGVAISCEELEAVIRGMGCGGKIKVVRGEPGNQ 731

Query: 154 SIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLES 213
           SIMVVTFGAMF GLQEAERLH +FADKSHGRDE HKINLR L+ SNVD+HKATGANTLES
Sbjct: 732 SIMVVTFGAMFSGLQEAERLHKSFADKSHGRDEVHKINLRHLIDSNVDLHKATGANTLES 791

Query: 214 VLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHASLQC 255
           VLY YLGL  DL KLDFETKKRSVV+SKKEIQAIV+ASLQC
Sbjct: 792 VLYGYLGLAEDLVKLDFETKKRSVVKSKKEIQAIVNASLQC 832

[Close]

BLAST of CSPI06G12340 vs. ExPASy TrEMBL
Match: A0A6J1CGJ5 (uncharacterized protein LOC111011032 OS=Momordica charantia OX=3673 GN=LOC111011032 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.1e-67
Identity = 137/184 (74.46%), Postives = 150/184 (81.52%), Query Frame = 0


Query: 71  MGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKL 130
           MGWSSE+AP+GLWV+ ILP VE  ALKEDLIIWP VLIIHNSSIA D   E V ISCE+L
Sbjct: 1   MGWSSEVAPNGLWVQRILPHVEAFALKEDLIIWPPVLIIHNSSIATDNTSEQVTISCEEL 60

Query: 131 EAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKI 190
           E  +R MG GGK KVVRGK  NQSIMVVTF AMF GLQEAERLH NFADKSHGRDEFH+I
Sbjct: 61  EVVIRGMGSGGKIKVVRGKPANQSIMVVTFCAMFSGLQEAERLHKNFADKSHGRDEFHEI 120

Query: 191 NLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHA 250
           N    + S+ D+HKA GAN +ESVLY YLGL  D +KLDFETKKRSVV+SKKEIQAIV A
Sbjct: 121 NSSHRIDSHGDLHKA-GANKMESVLYGYLGLAEDFEKLDFETKKRSVVKSKKEIQAIVDA 180

Query: 251 SLQC 255
           +LQC
Sbjct: 181 TLQC 183

[Close]

BLAST of CSPI06G12340 vs. ExPASy TrEMBL
Match: A0A3N7GBX5 (XS domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G147201 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 4.5e-53
Identity = 123/221 (55.66%), Postives = 148/221 (66.97%), Query Frame = 0


Query: 34   SKSKEFVDALSLPQHASRTLEGS-RAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVE 93
            S SK+FVD LSL QH   + +GS RAEHLGLHKALC LMGW+S   P+  WVR ILP VE
Sbjct: 962  SNSKDFVDTLSLAQHTVMSSKGSFRAEHLGLHKALCVLMGWNSAGFPNSQWVRQILPEVE 1021

Query: 94   VLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCG-GKFKVVRGKAV 153
              +LKEDLIIWP V++IHN SIA D   E + +S E L   +R MG G G   + RGKA 
Sbjct: 1022 ASSLKEDLIIWPPVVVIHNRSIANDNPDERIIVSVEGLRHILRGMGFGQGITNICRGKAA 1081

Query: 154  NQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTL 213
            NQS MVV FG  F GLQ AERLH  +A+   GR EF +I L    H ++   +   +NT 
Sbjct: 1082 NQSTMVVIFGQTFSGLQGAERLHKLYAESKRGRTEFQQIGL----HGSLQT-QGVSSNTK 1141

Query: 214  ESVLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHASL 253
            E+VLY YLG+  DLDKLDFE KKR VV+SKKEI+A+   +L
Sbjct: 1142 ENVLYGYLGISIDLDKLDFEIKKRCVVKSKKEIKAVADFAL 1177

[Close]

BLAST of CSPI06G12340 vs. NCBI nr
Match: XP_011657058.1 (uncharacterized protein LOC105435801 [Cucumis sativus] >KGN46926.1 hypothetical protein Csa_020974 [Cucumis sativus])

HSP 1 Score: 493.0 bits (1268), Expect = 1.5e-135
Identity = 249/254 (98.03%), Postives = 250/254 (98.43%), Query Frame = 0


Query: 1   MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEH 60
           MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEH
Sbjct: 1   MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEH 60

Query: 61  LGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRY 120
           LGLHKALCWLMGWSSEIAP+GLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRY
Sbjct: 61  LGLHKALCWLMGWSSEIAPNGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRY 120

Query: 121 EGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADK 180
           EGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADK
Sbjct: 121 EGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADK 180

Query: 181 SHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETKKRSVVRS 240
           SHGRDEFHKINLRCLV SNVDMHKATGANTLESV Y YLGLV DLDKLDFETKKRSVVRS
Sbjct: 181 SHGRDEFHKINLRCLVDSNVDMHKATGANTLESVRYGYLGLVEDLDKLDFETKKRSVVRS 240

Query: 241 KKEIQAIVHASLQC 255
           KKEIQAIVHASLQC
Sbjct: 241 KKEIQAIVHASLQC 254

[Close]

BLAST of CSPI06G12340 vs. NCBI nr
Match: XP_008458617.1 (PREDICTED: uncharacterized protein LOC103497964 [Cucumis melo] >KAA0033382.1 uncharacterized protein E6C27_scaffold111G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 371.7 bits (953), Expect = 5.0e-99
Identity = 189/221 (85.52%), Postives = 199/221 (90.05%), Query Frame = 0


Query: 34  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEV 93
           SKSKEFVDALSL QHASRTLEGSRAEHLGLHKALCWLMGWSSE AP+GLWVR ILP  EV
Sbjct: 612 SKSKEFVDALSLSQHASRTLEGSRAEHLGLHKALCWLMGWSSETAPNGLWVRRILPLEEV 671

Query: 94  LALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQ 153
           LALKEDLIIWP VLIIHNSSIAIDK  +GVAISCE+LEA +R MGCGGK KVVRG+  NQ
Sbjct: 672 LALKEDLIIWPPVLIIHNSSIAIDKLSDGVAISCEELEAVIRGMGCGGKIKVVRGEPGNQ 731

Query: 154 SIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLES 213
           SIMVVTFGAMF GLQEAERLH +FADKSHGRDE HKINLR L+ SNVD+HKATGANTLES
Sbjct: 732 SIMVVTFGAMFSGLQEAERLHKSFADKSHGRDEVHKINLRHLIDSNVDLHKATGANTLES 791

Query: 214 VLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHASLQC 255
           VLY YLGL  DL KLDFETKKRSVV+SKKEIQAIV+ASLQC
Sbjct: 792 VLYGYLGLAEDLVKLDFETKKRSVVKSKKEIQAIVNASLQC 832

[Close]

BLAST of CSPI06G12340 vs. NCBI nr
Match: XP_038900433.1 (uncharacterized protein LOC120087658 [Benincasa hispida])

HSP 1 Score: 342.8 bits (878), Expect = 2.5e-90
Identity = 175/221 (79.19%), Postives = 187/221 (84.62%), Query Frame = 0


Query: 34  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEV 93
           SKSKEF DALSL QHAS+TLEGSRAEHLGL KALCWLMGWSSE AP G WVR ILP  EV
Sbjct: 624 SKSKEFADALSLSQHASQTLEGSRAEHLGLQKALCWLMGWSSEAAPDGRWVRRILPLEEV 683

Query: 94  LALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQ 153
           LALKEDLIIWP VLIIHNSSIAID   E VAISCE+LE  +R MGCGGK KVVRGK  NQ
Sbjct: 684 LALKEDLIIWPPVLIIHNSSIAIDSPSERVAISCEELEVVIRGMGCGGKIKVVRGKPGNQ 743

Query: 154 SIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLES 213
           SIM+VTF AMF GLQEAERLH +FADKSHGRDEF KI    L+ S+ D+HKATGANTL++
Sbjct: 744 SIMIVTFDAMFSGLQEAERLHKSFADKSHGRDEFQKIYSSHLIDSHKDLHKATGANTLDN 803

Query: 214 VLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHASLQC 255
           VLY YLGL  DLDKLDFETKKRSVV+SKKEIQAIV+ASL C
Sbjct: 804 VLYGYLGLTEDLDKLDFETKKRSVVKSKKEIQAIVNASLHC 844

[Close]

BLAST of CSPI06G12340 vs. NCBI nr
Match: XP_022140332.1 (uncharacterized protein LOC111011032 [Momordica charantia])

HSP 1 Score: 266.5 bits (680), Expect = 2.3e-67
Identity = 137/184 (74.46%), Postives = 150/184 (81.52%), Query Frame = 0


Query: 71  MGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKL 130
           MGWSSE+AP+GLWV+ ILP VE  ALKEDLIIWP VLIIHNSSIA D   E V ISCE+L
Sbjct: 1   MGWSSEVAPNGLWVQRILPHVEAFALKEDLIIWPPVLIIHNSSIATDNTSEQVTISCEEL 60

Query: 131 EAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKI 190
           E  +R MG GGK KVVRGK  NQSIMVVTF AMF GLQEAERLH NFADKSHGRDEFH+I
Sbjct: 61  EVVIRGMGSGGKIKVVRGKPANQSIMVVTFCAMFSGLQEAERLHKNFADKSHGRDEFHEI 120

Query: 191 NLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHA 250
           N    + S+ D+HKA GAN +ESVLY YLGL  D +KLDFETKKRSVV+SKKEIQAIV A
Sbjct: 121 NSSHRIDSHGDLHKA-GANKMESVLYGYLGLAEDFEKLDFETKKRSVVKSKKEIQAIVDA 180

Query: 251 SLQC 255
           +LQC
Sbjct: 181 TLQC 183

[Close]

BLAST of CSPI06G12340 vs. NCBI nr
Match: XP_031270605.1 (uncharacterized protein LOC116129008 [Pistacia vera])

HSP 1 Score: 221.5 bits (563), Expect = 8.4e-54
Identity = 122/220 (55.45%), Postives = 149/220 (67.73%), Query Frame = 0


Query: 35  KSKEFVDALSLPQHA--SRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVE 94
           KSK+FVDALSL QHA  S+T  G RAEHLG H+ALC LMGW++   P+GLWV  +LP  E
Sbjct: 592 KSKDFVDALSLAQHAFMSKT-AGLRAEHLGFHRALCVLMGWNNAATPNGLWVPRVLPYAE 651

Query: 95  VLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCG-GKFKVVRGKAV 154
            LALK+DLIIWP V+ +HNSSIA     E +  + E+LE+ +R MG G G  KV RG+A 
Sbjct: 652 ALALKQDLIIWPPVVFVHNSSIANTNPDERIIATIEELESIIRGMGFGQGISKVCRGRAA 711

Query: 155 NQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTL 214
           NQS MVV F   F GLQEAE+LH  FADK  GR EF  I  +  + S+    K   A+ +
Sbjct: 712 NQSTMVVNFYGTFSGLQEAEKLHELFADKKRGRAEFEHITFQGRISSD----KTCNADKV 771

Query: 215 ESVLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHAS 252
           E+VLY YLG+  DLDKLDFE K+R  V+SKK+I  I H S
Sbjct: 772 ENVLYSYLGIAEDLDKLDFEAKRRCFVKSKKDILTIAHTS 806

[Close]

BLAST of CSPI06G12340 vs. TAIR 10
Match: AT3G22430.1 (CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). )

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-20
Identity = 69/217 (31.80%), Postives = 104/217 (47.93%), Query Frame = 0


Query: 36  SKEFVDALSLPQHASRTLE-GSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVL 95
           SK+  D  SL  H   + +  SR  HLGLHKALC LMGW+   AP        LP  E  
Sbjct: 292 SKDVQDTHSLVMHTYCSDDSSSRVHHLGLHKALCVLMGWNFSKAPDNSKAYQNLPADEAA 351

Query: 96  ALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMG-CGGKFKVVRGKAVNQ 155
             +  LIIWP  +I+ N+S    K         + ++  +R +G  GGK K + G+  + 
Sbjct: 352 INQAQLIIWPPHVIVQNTSTGKGKEGRMEGFGNKTMDNRIRELGLTGGKSKSLYGREGHL 411

Query: 156 SIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSN------VDMHKATG 215
            I +  F     GL++A R+   F   + GR  + ++        +      V++   TG
Sbjct: 412 GITLFKFAGDDSGLRDAMRMAEYFEKINRGRKSWGRVQPLTPSKDDEKNPGLVEVDGRTG 471

Query: 216 ANTLESVLYDYLGLVGDLDKLDFETKKRSVVRSKKEI 245
               + + Y YL  V DLDK+D ETKK++ + S +E+
Sbjct: 472 EK--KRIFYGYLATVTDLDKVDVETKKKTTIESLREL 506

The following BLAST results are available for this feature:

BLAST of CSPI06G12340 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G12340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGN5	7.3e-136	98.03	XS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G151630 PE=4 SV=...	[more]
A0A5A7SQC0	2.4e-99	85.52	XS domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3C894	2.4e-99	85.52	uncharacterized protein LOC103497964 OS=Cucumis melo OX=3656 GN=LOC103497964 PE=...	[more]
A0A6J1CGJ5	1.1e-67	74.46	uncharacterized protein LOC111011032 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A3N7GBX5	4.5e-53	55.66	XS domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G147201 ...	[more]

BLAST of CSPI06G12340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657058.1	1.5e-135	98.03	uncharacterized protein LOC105435801 [Cucumis sativus] >KGN46926.1 hypothetical ...	[more]
XP_008458617.1	5.0e-99	85.52	PREDICTED: uncharacterized protein LOC103497964 [Cucumis melo] >KAA0033382.1 unc...	[more]
XP_038900433.1	2.5e-90	79.19	uncharacterized protein LOC120087658 [Benincasa hispida]	[more]
XP_022140332.1	2.3e-67	74.46	uncharacterized protein LOC111011032 [Momordica charantia]	[more]
XP_031270605.1	8.4e-54	55.45	uncharacterized protein LOC116129008 [Pistacia vera]	[more]

BLAST of CSPI06G12340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22430.1	1.3e-20	31.80	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005380	XS domain	PFAM	PF03468	XS	coord: 98..224 e-value: 2.6E-14 score: 53.5
IPR038588	XS domain superfamily	GENE3D	3.30.70.2890	XS domain	coord: 95..252 e-value: 1.0E-25 score: 92.4
None	No IPR available	PANTHER	PTHR46619	RNA RECOGNITION MOTIF XS DOMAIN PROTEIN-RELATED	coord: 31..253
None	No IPR available	PANTHER	PTHR46619:SF2	XS DOMAIN PROTEIN	coord: 31..253

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G12340.1	CSPI06G12340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031047	gene silencing by RNA
cellular_component	GO:0016021	integral component of membrane