CSPI06G11130 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G11130
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 9728484 .. 9728804 (+)
RNA-Seq Expression	CSPI06G11130
Synteny	CSPI06G11130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTGGACTTTGGGACCTCAGCTTTGGTTAGGGATTGTCTAACAAATGCTGCAGTTGCAAATAATCCAAGGGTTTTTTGGGGTAGAAGAGGGCTGAAGTTCGCCATTATCTTCTTCCAGGTTTTGGAGAATGCAAGAGGTAGGTTTGTCATTCTATCCCTAGAATCTTTTAAAGGAAAAAAGACGAGAATTTTCATATCGAAAGGGAGCAAAGGAAAGGGTAGGAAATCTTTTGCAGAGGAGATATCGGTTTTACTTTTGGGTCTGGAAGGGGCGATTAGAATCAGTTTTGCTTTCGAGCTTTGGAAGGGAAATTAG

mRNA sequence

ATGGAGCTGGACTTTGGGACCTCAGCTTTGGTTAGGGATTGTCTAACAAATGCTGCAGTTGCAAATAATCCAAGGGTTTTTTGGGGTAGAAGAGGGCTGAAGTTCGCCATTATCTTCTTCCAGGTTTTGGAGAATGCAAGAGGTAGGTTTGTCATTCTATCCCTAGAATCTTTTAAAGGAAAAAAGACGAGAATTTTCATATCGAAAGGGAGCAAAGGAAAGGGTAGGAAATCTTTTGCAGAGGAGATATCGGTTTTACTTTTGGGTCTGGAAGGGGCGATTAGAATCAGTTTTGCTTTCGAGCTTTGGAAGGGAAATTAG

Coding sequence (CDS)

ATGGAGCTGGACTTTGGGACCTCAGCTTTGGTTAGGGATTGTCTAACAAATGCTGCAGTTGCAAATAATCCAAGGGTTTTTTGGGGTAGAAGAGGGCTGAAGTTCGCCATTATCTTCTTCCAGGTTTTGGAGAATGCAAGAGGTAGGTTTGTCATTCTATCCCTAGAATCTTTTAAAGGAAAAAAGACGAGAATTTTCATATCGAAAGGGAGCAAAGGAAAGGGTAGGAAATCTTTTGCAGAGGAGATATCGGTTTTACTTTTGGGTCTGGAAGGGGCGATTAGAATCAGTTTTGCTTTCGAGCTTTGGAAGGGAAATTAG

Protein sequence

MELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKGKKTRIFISKGSKGKGRKSFAEEISVLLLGLEGAIRISFAFELWKGN*

Homology

[Close]

BLAST of CSPI06G11130 vs. ExPASy TrEMBL
Match: A0A0A0KB99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136570 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.6e-50
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKG 60
           MELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKG
Sbjct: 1   MELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKG 60

Query: 61  KKTRIFISKGSKGKGRKSFAEEISVLLLGLEGAIRISFAFELWKGN 107
           KKTRIFISKGSKGKGRKSFAEEISVLLLGLEGAIRISFA E+WKGN
Sbjct: 61  KKTRIFISKGSKGKGRKSFAEEISVLLLGLEGAIRISFASEVWKGN 106

[Close]

BLAST of CSPI06G11130 vs. ExPASy TrEMBL
Match: A0A5D3CQQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold8046G00070 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKG 60
           +ELDFGTSA VRDCL  AA ANN  VFW RR L+FAIIFFQVLEN +GRF ILSLESFK 
Sbjct: 35  LELDFGTSAWVRDCLVGAAGANNSMVFWQRR-LEFAIIFFQVLENEKGRFAILSLESFKE 94

Query: 61  KKTRIFISKGSKGKGRKSFAEEISVLL 88
           +KTRIFI +GS+G G +S A EIS LL
Sbjct: 95  RKTRIFIPEGSRGSGWRSLAGEISALL 120

[Close]

BLAST of CSPI06G11130 vs. ExPASy TrEMBL
Match: A0A0A0LY03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G673520 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1   MELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKG 60
           ++LD GT   V D L  AA A+     W R+ L F IIFFQVLEN   RF I+SL+SFKG
Sbjct: 21  LDLDLGTLTWVEDRLNAAADASFSMGSWQRKKLDFGIIFFQVLENIGRRFTIISLDSFKG 80

Query: 61  KKTRIFISKGSKGKGRKSFAEEI 84
           +K R+FIS+GS+  G +S A EI
Sbjct: 81  RKARVFISEGSRESGWRSLAREI 103

[Close]

BLAST of CSPI06G11130 vs. NCBI nr
Match: TYK14183.1 (hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 2.5e-23
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKG 60
           +ELDFGTSA VRDCL  AA ANN  VFW RR L+FAIIFFQVLEN +GRF ILSLESFK 
Sbjct: 35  LELDFGTSAWVRDCLVGAAGANNSMVFWQRR-LEFAIIFFQVLENEKGRFAILSLESFKE 94

Query: 61  KKTRIFISKGSKGKGRKSFAEEISVLL 88
           +KTRIFI +GS+G G +S A EIS LL
Sbjct: 95  RKTRIFIPEGSRGSGWRSLAGEISALL 120

The following BLAST results are available for this feature:

BLAST of CSPI06G11130 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G11130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB99	2.6e-50	98.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136570 PE=4 SV=1	[more]
A0A5D3CQQ0	1.2e-23	72.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LY03	1.2e-12	53.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G673520 PE=4 SV=1	[more]

BLAST of CSPI06G11130 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14183.1	2.5e-23	72.41	hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI06G11130 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G11130.1	CSPI06G11130.1	mRNA