CSPI06G09530 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G09530
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Mitochondrial transcription termination factor family protein
Location	Chr6: 8130416 .. 8131147 (+)
RNA-Seq Expression	CSPI06G09530
Synteny	CSPI06G09530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGAGTGCCTTGTCACTCTGGGTGGTCACCCCCATGAATTTGCTTCGGCCATTGCCCAATTTCCTTACATGCTTTTTCATAGCATGGAGGACAAGCCTTGCCCACGTTTGGCTTTTTTCCAAGCATTGGATATCCCTGAGAAGCTGCTTGGGAAGATGATTTTGCTCAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTACTGAGATTGTGGACTTTCATGCTAATTTCGGCCTTGATAAGCAAGGGTTAATTGGCAAAGTTTTGGTAAAATATCCATTTCTTATGGGGTATAGTGTCGATAAAACGCTACGTCCCACATTAAAATTTTTGAAATCTATAGGTTTGAAGGATGTAGATCTTCAAGCAATTGCAGGTGGCTATCCTGAGGTTTTATGTAGGGATGCTAACAAAGTTTTGACACCCAATTTTGATTTCCTGAAGAACTGTGGATTTCGAGATGCGCAGATTGTAGCCCTGGTGGCCGGTTATCCTCCTATTTTGATTAAGAGTATCGAACATTCTATAGAACCACAGATTAATTTCTTGATAGAATTGAAGAAGTTGCTGGTTATCCGGACTTCTTTCGACATGGTTTGAAGAAGAGGCTAGAATTACAACACAAAATTTTGAAACAAAACAATATCAAGTGTAGTTTAAGTGAAATGTTGGATCGTAATCAGAAGAAGTTCTTAATGAAGTTTGGTATGTTAGATTGTCATT

mRNA sequence

ATGGTCGAGTGCCTTGTCACTCTGGGTGGTCACCCCCATGAATTTGCTTCGGCCATTGCCCAATTTCCTTACATGCTTTTTCATAGCATGGAGGACAAGCCTTGCCCACGTTTGGCTTTTTTCCAAGCATTGGATATCCCTGAGAAGCTGCTTGGGAAGATGATTTTGCTCAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTACTGAGATTGTGGACTTTCATGCTAATTTCGGCCTTGATAAGCAAGGGTTAATTGGCAAAGTTTTGGTAAAATATCCATTTCTTATGGGGTATAGTGTCGATAAAACGCTACGTCCCACATTAAAATTTTTGAAATCTATAGGTTTGAAGGATGTAGATCTTCAAGCAATTGCAGGTGGCTATCCTGAGGTTTTATGTAGGGATGCTAACAAAGTTTTGACACCCAATTTTGATTTCCTGAAGAACTGTGGATTTCGAGATGCGCAGATTGTAGCCCTGGTGGCCGGTTATCCTCCTATTTTGATTAAGAGTATCGAACATTCTATAGAACCACAGATTAATTTCTTGATAGAATTGAAGAAGTTGCTGGTTATCCGGACTTCTTTCGACATGGTTTGAAGAAGAGGCTAGAATTACAACACAAAATTTTGAAACAAAACAATATCAAGTGTAGTTTAAGTGAAATGTTGGATCGTAATCAGAAGAAGTTCTTAATGAAGTTTGGTATGTTAGATTGTCATT

Coding sequence (CDS)

ATGGTCGAGTGCCTTGTCACTCTGGGTGGTCACCCCCATGAATTTGCTTCGGCCATTGCCCAATTTCCTTACATGCTTTTTCATAGCATGGAGGACAAGCCTTGCCCACGTTTGGCTTTTTTCCAAGCATTGGATATCCCTGAGAAGCTGCTTGGGAAGATGATTTTGCTCAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTACTGAGATTGTGGACTTTCATGCTAATTTCGGCCTTGATAAGCAAGGGTTAATTGGCAAAGTTTTGGTAAAATATCCATTTCTTATGGGGTATAGTGTCGATAAAACGCTACGTCCCACATTAAAATTTTTGAAATCTATAGGTTTGAAGGATGTAGATCTTCAAGCAATTGCAGGTGGCTATCCTGAGGTTTTATGTAGGGATGCTAACAAAGTTTTGACACCCAATTTTGATTTCCTGAAGAACTGTGGATTTCGAGATGCGCAGATTGTAGCCCTGGTGGCCGGTTATCCTCCTATTTTGATTAAGAGTATCGAACATTCTATAGAACCACAGATTAATTTCTTGATAGAATTGAAGAAGTTGCTGGTTATCCGGACTTCTTTCGACATGGTTTGA

Protein sequence

MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLKDVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIEPQINFLIELKKLLVIRTSFDMV*

Homology

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BLAST of CSPI06G09530 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.6e-64
Identity = 117/190 (61.58%), Postives = 151/190 (79.47%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL +LG +P E ASAI +FP +L HS+E+K CP LAFFQAL +PE  LGKMIL NPR
Sbjct: 81  MVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPETQLGKMILFNPR 140

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLK-SIGL 120
           LISYSI  KLT IV F A+ GLD+ G+IGKVLVK PFLMGYSVDK LRPT +FLK S+GL
Sbjct: 141 LISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGL 200

Query: 121 KDVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSI 180
            +  ++++   +P++LCRD NK+L PN+D+LK CGF D+QI  +V GYP ILIKS+++S+
Sbjct: 201 SEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQILIKSVKNSL 260

Query: 181 EPQINFLIEL 190
           +P+I FL+++
Sbjct: 261 QPRIRFLVQV 270

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BLAST of CSPI06G09530 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-14
Identity = 50/185 (27.03%), Postives = 96/185 (51.89%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           +VE L+ LG    +  + + + P +   S+ D   P +AF + L I +    K+I   P 
Sbjct: 235 VVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPA 294

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLK 120
           +++YS   KLT  V+F +  GL ++  IG++L + P +M YSV+  LRPT+++ +S+   
Sbjct: 295 ILTYS-RQKLTSTVEFLSQTGLTEE-QIGRILTRCPNIMSYSVEDKLRPTMEYFRSL--- 354

Query: 121 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 180
           +VD+  +    P+         L P  +F    GF   +I  +++ Y  +   S++ ++ 
Sbjct: 355 NVDVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVM 414

Query: 181 PQINF 186
           P+ ++
Sbjct: 415 PKWDY 414

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BLAST of CSPI06G09530 vs. ExPASy Swiss-Prot
Match: Q9ZT96 (Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF4 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-11
Identity = 37/186 (19.89%), Postives = 92/186 (49.46%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           +++ L  LG     F   + ++P +L  S+     P + + Q LDI    + +++   P 
Sbjct: 182 VLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVIDLAPVVKYLQGLDIKPSDVPRVLERYPE 241

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLK 120
           ++ + +   ++  V +    G+ ++  IG +L +YP ++G  V + ++P +++L+ +G+ 
Sbjct: 242 VLGFKLEGTMSTSVAYLVGIGVARRE-IGGILTRYPEILGMRVARIIKPLVEYLEVLGIP 301

Query: 121 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 180
            +    +    P +L  + +  + PN   L++   R+  + +++A YP I+   ++  ++
Sbjct: 302 RLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRETSLPSIIAQYPEIIGIDLKPKLD 361

Query: 181 PQINFL 187
            Q   L
Sbjct: 362 TQRKLL 366

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BLAST of CSPI06G09530 vs. ExPASy Swiss-Prot
Match: Q6AUK6 (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.6e-11
Identity = 41/171 (23.98%), Postives = 85/171 (49.71%), Query Frame = 0


Query: 19  IAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEIVDFHA 78
           +A +P  L  S+     P L +   L + +  L  ++   P+++  S+V  L  +V +  
Sbjct: 129 LAAYPLALGCSVRKNMVPVLDYLGKLGVRQDALPDLLRRYPQVLHASVVVDLAPVVKYLQ 188

Query: 79  NFGLD-KQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLKDVDLQAIAGGYPEVLCR 138
             G+D +   + +VL +YP L+G+ ++ T+  ++ +L  IG+    + ++   +PEVL  
Sbjct: 189 --GMDVRPHDVPRVLERYPELLGFKLEGTMSTSIAYLVGIGVARRQVGSVITRFPEVLGM 248

Query: 139 DANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIEPQINFLIE 189
              K++ P  + L+  G +   I  ++   P +L   +E  ++P I  L+E
Sbjct: 249 RVGKIIKPFVEHLEGIGLQRLAIARIIEKKPYVLGFGLEDKVKPNIEALLE 297

[Close]

BLAST of CSPI06G09530 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.3e-11
Identity = 42/166 (25.30%), Postives = 79/166 (47.59%), Query Frame = 0


Query: 23  PYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEIVDFHANFGL 82
           P +    +E    P++ F Q + IP + +G M++  P L++ S+  K+  +V F      
Sbjct: 413 PILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAG 472

Query: 83  DKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLKDVDLQAIAGGYPEVLCRDANKV 142
             Q  IGKV+   P L+G S+   L P +++  S+G++   L  +   +P +L  + +  
Sbjct: 473 VTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVDN- 532

Query: 143 LTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIEPQINFLIE 189
           L P + +L+    R  Q    +  +P     S+E  I P+   ++E
Sbjct: 533 LRPKYRYLRRTMIRPLQD---LIEFPRFFSYSLERRIIPRHTIMVE 574

[Close]

BLAST of CSPI06G09530 vs. ExPASy TrEMBL
Match: A0A0A0KE07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G117190 PE=3 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 9.7e-107
Identity = 194/201 (96.52%), Postives = 195/201 (97.01%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL TLG HPHEFASA+AQFPYMLFHSMEDK CPRLAFFQALDIPEKLLGKMILLNPR
Sbjct: 1   MVECLATLGSHPHEFASAVAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 60

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLK 120
           LI YSIVPKLTEIVDFHANFGLDKQGLI KVLVKYPFLMGYSVDKTLRPTLKF KSIGLK
Sbjct: 61  LIRYSIVPKLTEIVDFHANFGLDKQGLIDKVLVKYPFLMGYSVDKTLRPTLKFFKSIGLK 120

Query: 121 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 180
           DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE
Sbjct: 121 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 180

Query: 181 PQINFLIELKKLLVIRTSFDM 202
           PQINFLIELKKLLVIRTSFDM
Sbjct: 181 PQINFLIELKKLLVIRTSFDM 201

[Close]

BLAST of CSPI06G09530 vs. ExPASy TrEMBL
Match: A0A1R3KSP4 (Mitochodrial transcription termination factor-related protein OS=Corchorus olitorius OX=93759 GN=COLO4_04808 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 3.2e-70
Identity = 130/189 (68.78%), Postives = 156/189 (82.54%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL TLG   HE ASAI +FP+++ HS+E+K CP LAFFQAL +PEK LGKMILLNPR
Sbjct: 83  MVECLATLGTKRHEVASAIVRFPHIISHSVEEKLCPLLAFFQALGVPEKQLGKMILLNPR 142

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLK 120
           LISYSI  KLTEIVDF A  GL ++G+IGKVL +YPF+MGYSVDK LRPT +FLKS+GL 
Sbjct: 143 LISYSIDSKLTEIVDFLATLGLAREGMIGKVLARYPFIMGYSVDKRLRPTSEFLKSVGLS 202

Query: 121 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 180
           + DLQ +A  +PEVLCRD NK+L PNF +L+ CGF D QI ALVAGYPPILIKSI++S+E
Sbjct: 203 ETDLQTVAMNFPEVLCRDVNKILKPNFAYLQQCGFGDRQIAALVAGYPPILIKSIKNSLE 262

Query: 181 PQINFLIEL 190
           P+I FL+E+
Sbjct: 263 PRIRFLVEV 271

[Close]

BLAST of CSPI06G09530 vs. ExPASy TrEMBL
Match: A0A2R6QI34 (Transcription termination factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc07200 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 7.2e-70
Identity = 129/189 (68.25%), Postives = 157/189 (83.07%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           MV+CL TLG  P E ASAI +FP++L HS+E+K CP LAFFQAL++PEK LGKM+LLNPR
Sbjct: 99  MVQCLATLGTKPREVASAITKFPHILSHSVEEKLCPLLAFFQALEVPEKQLGKMLLLNPR 158

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLK 120
           +ISYSI  KL++IVDF A  GL K+G+IGKVLVK PF+MGYSVDK LRPTL+FLKSIGL 
Sbjct: 159 IISYSIESKLSQIVDFLAILGLSKEGMIGKVLVKNPFIMGYSVDKRLRPTLEFLKSIGLS 218

Query: 121 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 180
           ++DLQ +A  +PEVLCRD NK+L PN+ +LK CGF   QIVALV GYPPILIKSI +S+E
Sbjct: 219 ELDLQKVAVNFPEVLCRDVNKILRPNYTYLKGCGFEGGQIVALVTGYPPILIKSISNSLE 278

Query: 181 PQINFLIEL 190
           P+I FL+E+
Sbjct: 279 PRIKFLVEV 287

[Close]

BLAST of CSPI06G09530 vs. ExPASy TrEMBL
Match: A0A067FQJ4 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g020213mg PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 7.2e-70
Identity = 130/189 (68.78%), Postives = 157/189 (83.07%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL TLG  P+E ASAI +FP +L HS+E+K CP LAFFQAL +PEK LG+MILLNPR
Sbjct: 83  MVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPR 142

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLK 120
           LISYSI  KLTE VDF  + GL ++G+IGKVLVK+PF+MGYSVD  LRPT +FLKS+GLK
Sbjct: 143 LISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLK 202

Query: 121 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 180
           ++DLQ +A  +PEVLCRD NK+L+PNF FLK CGF D QI ALVA YPPILIKSI++S+E
Sbjct: 203 ELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLE 262

Query: 181 PQINFLIEL 190
           P+I FL+E+
Sbjct: 263 PRIKFLVEV 271

[Close]

BLAST of CSPI06G09530 vs. ExPASy TrEMBL
Match: A0A2R6R766 (Transcription termination factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc10887 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 9.4e-70
Identity = 129/189 (68.25%), Postives = 157/189 (83.07%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           MV+CL TLG  P E ASAI +FP++L HS+E+K CP LAFFQAL +PEK LGKM+LLNPR
Sbjct: 98  MVQCLATLGTKPSEVASAITKFPHILSHSVEEKLCPVLAFFQALGVPEKQLGKMLLLNPR 157

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLK 120
           +ISYSI  KL++IVDF A+FGL K+G+IGKVLVK PF+MGYSVDK LRPTL+FLKSIGL 
Sbjct: 158 IISYSIESKLSQIVDFLASFGLSKEGMIGKVLVKNPFIMGYSVDKRLRPTLEFLKSIGLS 217

Query: 121 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 180
           +++LQ +A  +PEVLCRD NK+L PNF +LK CGF   QI ALV GYPPILIKSI +S+E
Sbjct: 218 ELNLQKVAVNFPEVLCRDVNKILRPNFTYLKGCGFEGGQIAALVTGYPPILIKSISNSLE 277

Query: 181 PQINFLIEL 190
           P+I FL+E+
Sbjct: 278 PRIRFLVEV 286

[Close]

BLAST of CSPI06G09530 vs. NCBI nr
Match: KAE8646817.1 (hypothetical protein Csa_005087 [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 6.9e-107
Identity = 195/202 (96.53%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL TLG HPHEFASA+AQFPYMLFHSMEDK CPRLAFFQALDIPEKLLGKMILLNPR
Sbjct: 14  MVECLATLGSHPHEFASAVAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 73

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLK 120
           LI YSIVPKLTEIVDFHANFGLDKQGLI KVLVKYPFLMGYSVDKTLRPTLKF KSIGLK
Sbjct: 74  LIRYSIVPKLTEIVDFHANFGLDKQGLIDKVLVKYPFLMGYSVDKTLRPTLKFFKSIGLK 133

Query: 121 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 180
           DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE
Sbjct: 134 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 193

Query: 181 PQINFLIELKKLLVIRTSFDMV 203
           PQINFLIELKKLLVIRTSFDMV
Sbjct: 194 PQINFLIELKKLLVIRTSFDMV 215

[Close]

BLAST of CSPI06G09530 vs. NCBI nr
Match: XP_031744171.1 (LOW QUALITY PROTEIN: transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 373.2 bits (957), Expect = 1.4e-99
Identity = 181/192 (94.27%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL TLG HPHEFASA+AQFPYMLFHSMEDK CPRLAFFQALDIPEKLLGKMILLNPR
Sbjct: 247 MVECLATLGSHPHEFASAVAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPR 306

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLK 120
           LI YSIVPKLTEIVDFHANFGLDKQGLI KVLVKYPFLMGYSVDKTLRPTLKF KSIGLK
Sbjct: 307 LIRYSIVPKLTEIVDFHANFGLDKQGLIDKVLVKYPFLMGYSVDKTLRPTLKFFKSIGLK 366

Query: 121 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 180
           DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE
Sbjct: 367 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 426

Query: 181 PQINFLIELKKL 193
           PQINFLIE +++
Sbjct: 427 PQINFLIEXEEV 438

[Close]

BLAST of CSPI06G09530 vs. NCBI nr
Match: XP_006486552.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Citrus sinensis])

HSP 1 Score: 275.0 bits (702), Expect = 5.1e-70
Identity = 131/189 (69.31%), Postives = 158/189 (83.60%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL TLG  P+E ASAI +FP +L HS+E+K CP LAFFQAL +PEK LG+MILLNPR
Sbjct: 83  MVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPR 142

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLK 120
           LISYSI  KLTE VDF A+ GL ++G+IGKVLVK+PF+MGYSVD  LRPT +FLKS+GLK
Sbjct: 143 LISYSIESKLTETVDFLASLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLK 202

Query: 121 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 180
           ++DLQ +A  +PEVLCRD NK+L+PNF FLK CGF D QI ALVA YPPILIKSI++S+E
Sbjct: 203 ELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLE 262

Query: 181 PQINFLIEL 190
           P+I FL+E+
Sbjct: 263 PRIKFLVEV 271

[Close]

BLAST of CSPI06G09530 vs. NCBI nr
Match: OMP10113.1 (Mitochodrial transcription termination factor-related protein [Corchorus olitorius])

HSP 1 Score: 274.6 bits (701), Expect = 6.7e-70
Identity = 130/189 (68.78%), Postives = 156/189 (82.54%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL TLG   HE ASAI +FP+++ HS+E+K CP LAFFQAL +PEK LGKMILLNPR
Sbjct: 83  MVECLATLGTKRHEVASAIVRFPHIISHSVEEKLCPLLAFFQALGVPEKQLGKMILLNPR 142

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLK 120
           LISYSI  KLTEIVDF A  GL ++G+IGKVL +YPF+MGYSVDK LRPT +FLKS+GL 
Sbjct: 143 LISYSIDSKLTEIVDFLATLGLAREGMIGKVLARYPFIMGYSVDKRLRPTSEFLKSVGLS 202

Query: 121 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 180
           + DLQ +A  +PEVLCRD NK+L PNF +L+ CGF D QI ALVAGYPPILIKSI++S+E
Sbjct: 203 ETDLQTVAMNFPEVLCRDVNKILKPNFAYLQQCGFGDRQIAALVAGYPPILIKSIKNSLE 262

Query: 181 PQINFLIEL 190
           P+I FL+E+
Sbjct: 263 PRIRFLVEV 271

[Close]

BLAST of CSPI06G09530 vs. NCBI nr
Match: PSS08263.1 (Transcription termination factor like [Actinidia chinensis var. chinensis])

HSP 1 Score: 273.5 bits (698), Expect = 1.5e-69
Identity = 129/189 (68.25%), Postives = 157/189 (83.07%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           MV+CL TLG  P E ASAI +FP++L HS+E+K CP LAFFQAL++PEK LGKM+LLNPR
Sbjct: 99  MVQCLATLGTKPREVASAITKFPHILSHSVEEKLCPLLAFFQALEVPEKQLGKMLLLNPR 158

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLK 120
           +ISYSI  KL++IVDF A  GL K+G+IGKVLVK PF+MGYSVDK LRPTL+FLKSIGL 
Sbjct: 159 IISYSIESKLSQIVDFLAILGLSKEGMIGKVLVKNPFIMGYSVDKRLRPTLEFLKSIGLS 218

Query: 121 DVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIE 180
           ++DLQ +A  +PEVLCRD NK+L PN+ +LK CGF   QIVALV GYPPILIKSI +S+E
Sbjct: 219 ELDLQKVAVNFPEVLCRDVNKILRPNYTYLKGCGFEGGQIVALVTGYPPILIKSISNSLE 278

Query: 181 PQINFLIEL 190
           P+I FL+E+
Sbjct: 279 PRIKFLVEV 287

[Close]

BLAST of CSPI06G09530 vs. TAIR 10
Match: AT4G38160.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-65
Identity = 117/190 (61.58%), Postives = 151/190 (79.47%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL +LG +P E ASAI +FP +L HS+E+K CP LAFFQAL +PE  LGKMIL NPR
Sbjct: 81  MVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPETQLGKMILFNPR 140

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLK-SIGL 120
           LISYSI  KLT IV F A+ GLD+ G+IGKVLVK PFLMGYSVDK LRPT +FLK S+GL
Sbjct: 141 LISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGL 200

Query: 121 KDVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSI 180
            +  ++++   +P++LCRD NK+L PN+D+LK CGF D+QI  +V GYP ILIKS+++S+
Sbjct: 201 SEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQILIKSVKNSL 260

Query: 181 EPQINFLIEL 190
           +P+I FL+++
Sbjct: 261 QPRIRFLVQV 270

[Close]

BLAST of CSPI06G09530 vs. TAIR 10
Match: AT4G38160.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-65
Identity = 117/190 (61.58%), Postives = 151/190 (79.47%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL +LG +P E ASAI +FP +L HS+E+K CP LAFFQAL +PE  LGKMIL NPR
Sbjct: 81  MVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPETQLGKMILFNPR 140

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLK-SIGL 120
           LISYSI  KLT IV F A+ GLD+ G+IGKVLVK PFLMGYSVDK LRPT +FLK S+GL
Sbjct: 141 LISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGL 200

Query: 121 KDVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSI 180
            +  ++++   +P++LCRD NK+L PN+D+LK CGF D+QI  +V GYP ILIKS+++S+
Sbjct: 201 SEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQILIKSVKNSL 260

Query: 181 EPQINFLIEL 190
           +P+I FL+++
Sbjct: 261 QPRIRFLVQV 270

[Close]

BLAST of CSPI06G09530 vs. TAIR 10
Match: AT4G38160.3 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-65
Identity = 117/190 (61.58%), Postives = 151/190 (79.47%), Query Frame = 0


Query: 1   MVECLVTLGGHPHEFASAIAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPR 60
           MVECL +LG +P E ASAI +FP +L HS+E+K CP LAFFQAL +PE  LGKMIL NPR
Sbjct: 81  MVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPETQLGKMILFNPR 140

Query: 61  LISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLK-SIGL 120
           LISYSI  KLT IV F A+ GLD+ G+IGKVLVK PFLMGYSVDK LRPT +FLK S+GL
Sbjct: 141 LISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGL 200

Query: 121 KDVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSI 180
            +  ++++   +P++LCRD NK+L PN+D+LK CGF D+QI  +V GYP ILIKS+++S+
Sbjct: 201 SEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQILIKSVKNSL 260

Query: 181 EPQINFLIEL 190
           +P+I FL+++
Sbjct: 261 QPRIRFLVQV 270

[Close]

BLAST of CSPI06G09530 vs. TAIR 10
Match: AT2G44020.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-16
Identity = 46/169 (27.22%), Postives = 90/169 (53.25%), Query Frame = 0


Query: 19  IAQFPYMLFHSMEDKPCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEIVDFHA 78
           I ++P ML  S+     P LA+ + + I    LG+ +   P+++  S+V +L  +V F  
Sbjct: 129 INEYPLMLGCSVRKNLIPVLAYLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVVKFLR 188

Query: 79  NFGLDKQGLIGKVLVKYPFLMGYSVDKTLRPTLKFLKSIGLKDVDLQAIAGGYPEVLCRD 138
              ++KQ L G VL+KYP L+G+ ++ T+  ++ +L SIG+   D+  +   YP +L   
Sbjct: 189 GLDVEKQDL-GYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLLGMR 248

Query: 139 ANKVLTPNFDFLKNCGFRDAQIVALVAGYPPILIKSIEHSIEPQINFLI 188
              ++ P  D+L + G     +  ++     I+  ++E +++P ++ LI
Sbjct: 249 VGTMIKPLVDYLISIGLPKKIVARMLEKRSYIVGYNLEETVKPNVDCLI 296

[Close]

BLAST of CSPI06G09530 vs. TAIR 10
Match: AT1G78930.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.9e-16
Identity = 44/147 (29.93%), Postives = 77/147 (52.38%), Query Frame = 0


Query: 41  FQALDIPEKLLGKMILLNPRLISYSIVPKLTEIVDFHANFGLDKQGLIGKVLVKYPFLMG 100
           F  L + +K +GK+I   P+L+      +  ++V F  + G  K+ ++G++L + P + G
Sbjct: 378 FDKLGVRDKRMGKVIPKMPQLLLCK-PQEFLKVVCFLEDLGFQKE-IVGQILCRCPEIFG 437

Query: 101 YSVDKTLRPTLKFLKSIGLKDVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQI 160
            S++KTL+  L FL   G+       I   YPE L  DA+K + P   +L   G  + +I
Sbjct: 438 CSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREI 497

Query: 161 VALVAGYPPILIKSIEHSIEPQINFLI 188
             ++  + PIL  SI+  + P+  FL+
Sbjct: 498 AFMIRKFSPILGYSIDKVLRPKFEFLV 522

The following BLAST results are available for this feature:

BLAST of CSPI06G09530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	2.6e-64	61.58	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]
F4JVI3	4.2e-14	27.03	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9ZT96	1.1e-11	19.89	Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q6AUK6	5.6e-11	23.98	Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja...	[more]
F4IHL3	7.3e-11	25.30	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of CSPI06G09530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE07	9.7e-107	96.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G117190 PE=3 SV=1	[more]
A0A1R3KSP4	3.2e-70	68.78	Mitochodrial transcription termination factor-related protein OS=Corchorus olito...	[more]
A0A2R6QI34	7.2e-70	68.25	Transcription termination factor like OS=Actinidia chinensis var. chinensis OX=1...	[more]
A0A067FQJ4	7.2e-70	68.78	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g020213mg PE=3 SV=1	[more]
A0A2R6R766	9.4e-70	68.25	Transcription termination factor like OS=Actinidia chinensis var. chinensis OX=1...	[more]

BLAST of CSPI06G09530 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646817.1	6.9e-107	96.53	hypothetical protein Csa_005087 [Cucumis sativus]	[more]
XP_031744171.1	1.4e-99	94.27	LOW QUALITY PROTEIN: transcription termination factor MTERF6, chloroplastic/mito...	[more]
XP_006486552.1	5.1e-70	69.31	transcription termination factor MTERF6, chloroplastic/mitochondrial [Citrus sin...	[more]
OMP10113.1	6.7e-70	68.78	Mitochodrial transcription termination factor-related protein [Corchorus olitori...	[more]
PSS08263.1	1.5e-69	68.25	Transcription termination factor like [Actinidia chinensis var. chinensis]	[more]

BLAST of CSPI06G09530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38160.1	1.8e-65	61.58	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.2	1.8e-65	61.58	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.3	1.8e-65	61.58	Mitochondrial transcription termination factor family protein	[more]
AT2G44020.1	3.5e-16	27.22	Mitochondrial transcription termination factor family protein	[more]
AT1G78930.1	5.9e-16	29.93	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 161..192 e-value: 7.4 score: 15.5 coord: 16..47 e-value: 16.0 score: 14.5 coord: 52..83 e-value: 11.0 score: 15.0 coord: 125..156 e-value: 0.62 score: 19.1 coord: 89..120 e-value: 1.3E-7 score: 41.3
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 13..188 e-value: 5.4E-26 score: 91.3
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 1..188
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 1..196 e-value: 4.6E-34 score: 119.8
None	No IPR available	PANTHER	PTHR13068:SF5	TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 1..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G09530.1	CSPI06G09530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0032502	developmental process
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003690	double-stranded DNA binding