CSPI06G09280 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G09280
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	WW domain-binding protein 11
Location	Chr6: 7866659 .. 7867120 (+)
RNA-Seq Expression	CSPI06G09280
Synteny	CSPI06G09280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAAATCTTCAATTGGTAAGTTAGTTACTTGTTCAATCTTATAGTAAAACAGTAATTTACTTGTGTACTTTTATATTTGAAACTTCCACTAAAGTCTTGTATGAATGAAAATTGTAGGACCACAAGTTCCTCTATATGATGCTTGTACTAGTGGTGTTGTATCATCCTTGAATATGGAGCTGAAGGATGTTCCCTCGGCTGTACCTCCACCTCCCCCACCAACTCCTTTGCCAGACTCTGCTAAGTTGGGTTCTGTTGATGGTCCTGCTCTACGATTTCTTACTTTTACCTCCTCCACCTCCATTGGCACCTATGCCTGTAGCATCAAACTTGGGTTTACCATTACTTCCACCACCTCCTGGACGTCCACCAAGAGAACAAGTGGTAGGCCGCCCTCCTTTTTTGTTGCTTCCATCTTTGCAGCAGTCTACAATGATGCTCCTGTCTGGAAGCAGTGA

mRNA sequence

ATGTTTAAATCTTCAATTGGACCACAAGTTCCTCTATATGATGCTTGTACTAGTGGTGTTGTATCATCCTTGAATATGGAGCTGAAGGATGTTCCCTCGGCTGTACCTCCACCTCCCCCACCAACTCCTTTGCCAGACTCTGCTAAGTTGGGTTCTGTTGATGGTCCTGCTCTACGATTTCTTACTTTTACCTCCTCCACCTCCATTGGCACCTATGCCTGTAGCATCAAACTTGGGTTTACCATTACTTCCACCACCTCCTGGACGTCCACCAAGAGAACAAGTGGTAGGCCGCCCTCCTTTTTTGTTGCTTCCATCTTTGCAGCAGTCTACAATGATGCTCCTGTCTGGAAGCAGTGA

Coding sequence (CDS)

ATGTTTAAATCTTCAATTGGACCACAAGTTCCTCTATATGATGCTTGTACTAGTGGTGTTGTATCATCCTTGAATATGGAGCTGAAGGATGTTCCCTCGGCTGTACCTCCACCTCCCCCACCAACTCCTTTGCCAGACTCTGCTAAGTTGGGTTCTGTTGATGGTCCTGCTCTACGATTTCTTACTTTTACCTCCTCCACCTCCATTGGCACCTATGCCTGTAGCATCAAACTTGGGTTTACCATTACTTCCACCACCTCCTGGACGTCCACCAAGAGAACAAGTGGTAGGCCGCCCTCCTTTTTTGTTGCTTCCATCTTTGCAGCAGTCTACAATGATGCTCCTGTCTGGAAGCAGTGA

Protein sequence

MFKSSIGPQVPLYDACTSGVVSSLNMELKDVPSAVPPPPPPTPLPDSAKLGSVDGPALRFLTFTSSTSIGTYACSIKLGFTITSTTSWTSTKRTSGRPPSFFVASIFAAVYNDAPVWKQ*

Homology

[Close]

BLAST of CSPI06G09280 vs. ExPASy Swiss-Prot
Match: G3CHK5 (Protein EARLY FLOWERING 5 OS=Poncirus trifoliata OX=37690 GN=ELF5 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.1e-05
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 1   MFKSSIGPQVPLYDACTSGVVSSLNMELKDVPSAVPPPPPPTPLPDSAKLGSVDGPAL 59
           M+ SSIGP++PL    +S   SS   E  DV  A+P PPPP PLPDS +LGS DG  +
Sbjct: 148 MYLSSIGPRIPL----SSDEASSSKTESDDV--ALPVPPPPPPLPDSGRLGSGDGSVI 199

[Close]

BLAST of CSPI06G09280 vs. ExPASy TrEMBL
Match: A0A5D3BJ39 (WW domain-binding protein 11 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003210 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1   MFKSSIGPQVPLYDACTSGVVSSLNMELKDVPSAVPPPPPPTPLPDSAKLGSVDGPAL 59
           MFKSSIGP+VPL DA TSG  SSLNME +DVP AVPPPPPP PLPDSAKLGS DGPAL
Sbjct: 149 MFKSSIGPRVPLSDASTSGAASSLNMEPEDVPLAVPPPPPPPPLPDSAKLGSADGPAL 206

[Close]

BLAST of CSPI06G09280 vs. ExPASy TrEMBL
Match: A0A1S3AV96 (WW domain-binding protein 11 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483054 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1   MFKSSIGPQVPLYDACTSGVVSSLNMELKDVPSAVPPPPPPTPLPDSAKLGSVDGPAL 59
           MFKSSIGP+VPL DA TSG  SSLNME +DVP AVPPPPPP PLPDSAKLGS DGPAL
Sbjct: 149 MFKSSIGPRVPLSDASTSGAASSLNMEPEDVPLAVPPPPPPPPLPDSAKLGSADGPAL 206

[Close]

BLAST of CSPI06G09280 vs. ExPASy TrEMBL
Match: A0A1S3AV89 (basic proline-rich protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483054 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1   MFKSSIGPQVPLYDACTSGVVSSLNMELKDVPSAVPPPPPPTPLPDSAKLGSVDGPAL 59
           MFKSSIGP+VPL DA TSG  SSLNME +DVP AVPPPPPP PLPDSAKLGS DGPAL
Sbjct: 127 MFKSSIGPRVPLSDASTSGAASSLNMEPEDVPLAVPPPPPPPPLPDSAKLGSADGPAL 184

[Close]

BLAST of CSPI06G09280 vs. ExPASy TrEMBL
Match: A0A0A0LQR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045630 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.1e-16
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MFKSSIGPQVPLYDACTSGVVSSLNMELKDVPSAVPPPPPPTPLPDSAKLGSVDGPAL 59
           MFKSSIGP+VPL DA TSG   SLNME +DVP AVPPPPPP PLPDSAKLGS DGPAL
Sbjct: 149 MFKSSIGPRVPLSDASTSGAAPSLNMEPEDVPLAVPPPPPPPPLPDSAKLGSADGPAL 206

[Close]

BLAST of CSPI06G09280 vs. ExPASy TrEMBL
Match: A0A6J1C761 (WW domain-binding protein 11 OS=Momordica charantia OX=3673 GN=LOC111008623 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MFKSSIGPQVPLYDACTSGVVSSLNMELKDVPSAVPPPPPPTPLPDSAKLGSVDGPAL 59
           MFKSSIGP+VPL DA TSG  SS NME +DVP +VPPPPPP PLPDSAK+GS DGPAL
Sbjct: 148 MFKSSIGPRVPLSDASTSGAASSSNMESEDVPLSVPPPPPPPPLPDSAKMGSADGPAL 205

[Close]

BLAST of CSPI06G09280 vs. NCBI nr
Match: XP_008437718.1 (PREDICTED: basic proline-rich protein isoform X2 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 3.3e-16
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1   MFKSSIGPQVPLYDACTSGVVSSLNMELKDVPSAVPPPPPPTPLPDSAKLGSVDGPAL 59
           MFKSSIGP+VPL DA TSG  SSLNME +DVP AVPPPPPP PLPDSAKLGS DGPAL
Sbjct: 127 MFKSSIGPRVPLSDASTSGAASSLNMEPEDVPLAVPPPPPPPPLPDSAKLGSADGPAL 184

[Close]

BLAST of CSPI06G09280 vs. NCBI nr
Match: XP_008437712.1 (PREDICTED: WW domain-binding protein 11 isoform X1 [Cucumis melo] >TYJ99116.1 WW domain-binding protein 11 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.3e-16
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1   MFKSSIGPQVPLYDACTSGVVSSLNMELKDVPSAVPPPPPPTPLPDSAKLGSVDGPAL 59
           MFKSSIGP+VPL DA TSG  SSLNME +DVP AVPPPPPP PLPDSAKLGS DGPAL
Sbjct: 149 MFKSSIGPRVPLSDASTSGAASSLNMEPEDVPLAVPPPPPPPPLPDSAKLGSADGPAL 206

[Close]

BLAST of CSPI06G09280 vs. NCBI nr
Match: XP_011651256.1 (protein EARLY FLOWERING 5 isoform X2 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MFKSSIGPQVPLYDACTSGVVSSLNMELKDVPSAVPPPPPPTPLPDSAKLGSVDGPAL 59
           MFKSSIGP+VPL DA TSG   SLNME +DVP AVPPPPPP PLPDSAKLGS DGPAL
Sbjct: 127 MFKSSIGPRVPLSDASTSGAAPSLNMEPEDVPLAVPPPPPPPPLPDSAKLGSADGPAL 184

[Close]

BLAST of CSPI06G09280 vs. NCBI nr
Match: XP_004152447.1 (protein EARLY FLOWERING 5 isoform X1 [Cucumis sativus] >KGN64265.1 hypothetical protein Csa_013617 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MFKSSIGPQVPLYDACTSGVVSSLNMELKDVPSAVPPPPPPTPLPDSAKLGSVDGPAL 59
           MFKSSIGP+VPL DA TSG   SLNME +DVP AVPPPPPP PLPDSAKLGS DGPAL
Sbjct: 149 MFKSSIGPRVPLSDASTSGAAPSLNMEPEDVPLAVPPPPPPPPLPDSAKLGSADGPAL 206

[Close]

BLAST of CSPI06G09280 vs. NCBI nr
Match: XP_038895102.1 (protein EARLY FLOWERING 5 [Benincasa hispida])

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MFKSSIGPQVPLYDACTSGVVSSLNMELKDVPSAVPPPPPPTPLPDSAKLGSVDGPAL 59
           MFKSSIGP+VPL DA TSGV SS NME +DVP AVPPPPPP PLPDS KLGS DGPAL
Sbjct: 149 MFKSSIGPRVPLSDASTSGVASSSNMEPEDVPLAVPPPPPPPPLPDSVKLGSADGPAL 206

The following BLAST results are available for this feature:

BLAST of CSPI06G09280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
G3CHK5	2.1e-05	51.72	Protein EARLY FLOWERING 5 OS=Poncirus trifoliata OX=37690 GN=ELF5 PE=2 SV=1	[more]

BLAST of CSPI06G09280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJ39	1.6e-16	82.76	WW domain-binding protein 11 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3AV96	1.6e-16	82.76	WW domain-binding protein 11 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483054 ...	[more]
A0A1S3AV89	1.6e-16	82.76	basic proline-rich protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483054 PE...	[more]
A0A0A0LQR9	6.1e-16	81.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045630 PE=4 SV=1	[more]
A0A6J1C761	2.3e-15	77.59	WW domain-binding protein 11 OS=Momordica charantia OX=3673 GN=LOC111008623 PE=4...	[more]

BLAST of CSPI06G09280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437718.1	3.3e-16	82.76	PREDICTED: basic proline-rich protein isoform X2 [Cucumis melo]	[more]
XP_008437712.1	3.3e-16	82.76	PREDICTED: WW domain-binding protein 11 isoform X1 [Cucumis melo] >TYJ99116.1 WW...	[more]
XP_011651256.1	1.3e-15	81.03	protein EARLY FLOWERING 5 isoform X2 [Cucumis sativus]	[more]
XP_004152447.1	1.3e-15	81.03	protein EARLY FLOWERING 5 isoform X1 [Cucumis sativus] >KGN64265.1 hypothetical ...	[more]
XP_038895102.1	1.6e-15	81.03	protein EARLY FLOWERING 5 [Benincasa hispida]	[more]

BLAST of CSPI06G09280 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G09280.1	CSPI06G09280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex