CSPI06G09210 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G09210
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 7750713 .. 7751192 (+)
RNA-Seq ExpressionCSPI06G09210
SyntenyCSPI06G09210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCAAGGAGGGGATGATAAAACTCTACATGATAATGTTGAAGTAACTCAAGCCGATCAATTAGACGCACCAGAGGAAGATATGACTCTCTCAGTCATTAAAGAAACTAAAGGTGATGAATTAGAACTAGTGGAGGATGATAGGACTCTCTCAGTCATTGAAGAAACTCAAGATTATGATTCCGATGTGGTGGAGGATGCTAAGACTGTCAAAGTCATTGAAGAACTTCAAGATGATGAATTCAAAGTATTGGAGGATGACACGACTCTTTCAATCACCGAAGACACTCAAGATGATGAATTAGAAATAGTGGAGGGTGATAAAACTCTCTCAGTGGTGGAAGAAACTTATAATGATGATGAACAAAAACAAGGAGGCAGCGTTGATGCCATCAGCTTAGAGGAGTTGAACAGAAAGTGCGAGGAGTTCAAAAGAAGAATGAAAAATGATATACAGATTGAAATTCTAACAATATAA

mRNA sequence

ATGGGTCAAGGAGGGGATGATAAAACTCTACATGATAATGTTGAAGTAACTCAAGCCGATCAATTAGACGCACCAGAGGAAGATATGACTCTCTCAGTCATTAAAGAAACTAAAGGTGATGAATTAGAACTAGTGGAGGATGATAGGACTCTCTCAGTCATTGAAGAAACTCAAGATTATGATTCCGATGTGGTGGAGGATGCTAAGACTGTCAAAGTCATTGAAGAACTTCAAGATGATGAATTCAAAGTATTGGAGGATGACACGACTCTTTCAATCACCGAAGACACTCAAGATGATGAATTAGAAATAGTGGAGGGTGATAAAACTCTCTCAGTGGTGGAAGAAACTTATAATGATGATGAACAAAAACAAGGAGGCAGCGTTGATGCCATCAGCTTAGAGGAGTTGAACAGAAAGTGCGAGGAGTTCAAAAGAAGAATGAAAAATGATATACAGATTGAAATTCTAACAATATAA

Coding sequence (CDS)

ATGGGTCAAGGAGGGGATGATAAAACTCTACATGATAATGTTGAAGTAACTCAAGCCGATCAATTAGACGCACCAGAGGAAGATATGACTCTCTCAGTCATTAAAGAAACTAAAGGTGATGAATTAGAACTAGTGGAGGATGATAGGACTCTCTCAGTCATTGAAGAAACTCAAGATTATGATTCCGATGTGGTGGAGGATGCTAAGACTGTCAAAGTCATTGAAGAACTTCAAGATGATGAATTCAAAGTATTGGAGGATGACACGACTCTTTCAATCACCGAAGACACTCAAGATGATGAATTAGAAATAGTGGAGGGTGATAAAACTCTCTCAGTGGTGGAAGAAACTTATAATGATGATGAACAAAAACAAGGAGGCAGCGTTGATGCCATCAGCTTAGAGGAGTTGAACAGAAAGTGCGAGGAGTTCAAAAGAAGAATGAAAAATGATATACAGATTGAAATTCTAACAATATAA

Protein sequence

MGQGGDDKTLHDNVEVTQADQLDAPEEDMTLSVIKETKGDELELVEDDRTLSVIEETQDYDSDVVEDAKTVKVIEELQDDEFKVLEDDTTLSITEDTQDDELEIVEGDKTLSVVEETYNDDEQKQGGSVDAISLEELNRKCEEFKRRMKNDIQIEILTI*
Homology
BLAST of CSPI06G09210 vs. ExPASy TrEMBL
Match: A0A0A0KCP4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111940 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.8e-48
Identity = 118/156 (75.64%), Postives = 120/156 (76.92%), Query Frame = 0

Query: 4   GGDDKTLHDNVEVTQADQLDAPEEDMTLSVIKETKGDELELVEDDRTLSVIEETQDYDSD 63
           GGDDKTLHDNVEVTQA+QLDAPEEDMTLSVIKETKGDELELV+DDRTLSVIEETQDYDSD
Sbjct: 12  GGDDKTLHDNVEVTQANQLDAPEEDMTLSVIKETKGDELELVKDDRTLSVIEETQDYDSD 71

Query: 64  VVEDAKTVKVIEELQDDEFKVLEDDTTLSITEDTQDDELEIVEGDKTLSVVEETYNDDEQ 123
           VVEDAKTVK                                  GDKTLSVVEET NDDEQ
Sbjct: 72  VVEDAKTVK----------------------------------GDKTLSVVEETCNDDEQ 131

Query: 124 KQGGSVDAISLEELNRKCEEFKRRMKNDIQIEILTI 160
           KQGGSVDAISLEELNRKCEEF RRMKNDIQIEILTI
Sbjct: 132 KQGGSVDAISLEELNRKCEEFIRRMKNDIQIEILTI 133

BLAST of CSPI06G09210 vs. ExPASy TrEMBL
Match: A0A6J1CFL5 (uncharacterized protein LOC111011235 OS=Momordica charantia OX=3673 GN=LOC111011235 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.4e-22
Identity = 80/151 (52.98%), Postives = 107/151 (70.86%), Query Frame = 0

Query: 14  VEVTQADQLDAPEEDMTLSVIKETKGDELELVEDDRTLSVIEETQDYDSDVVEDAKTV-- 73
           VE T+ D+L+  E+DMTL VI+E   DELE  +DDRTLSV+EE  D D++  +    V  
Sbjct: 105 VEETRDDELEVREDDMTLFVIEEIHDDELE-AKDDRTLSVVEEIHD-DNEQEQGGGDVDM 164

Query: 74  --KVIEELQDDEFKVLEDDTTLSITEDTQDDELEIVEGDKTLSVVEETYNDD-EQKQGGS 133
              ++EE +DDE +V+EDD TL   E+TQDDELE  + DKTLSVV+ET++D+ EQ+QGG 
Sbjct: 165 ILSIVEETRDDELEVVEDDMTLFDVEETQDDELEAAD-DKTLSVVKETHDDEQEQEQGGG 224

Query: 134 VDAISLEELNRKCEEFKRRMKNDIQIEILTI 160
            D ISLEELN+K +EF R  +  I+ E+LTI
Sbjct: 225 NDMISLEELNKKFDEFIRTTRMKIRAELLTI 252

BLAST of CSPI06G09210 vs. NCBI nr
Match: KGN46604.1 (hypothetical protein Csa_005627 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 5.7e-48
Identity = 118/156 (75.64%), Postives = 120/156 (76.92%), Query Frame = 0

Query: 4   GGDDKTLHDNVEVTQADQLDAPEEDMTLSVIKETKGDELELVEDDRTLSVIEETQDYDSD 63
           GGDDKTLHDNVEVTQA+QLDAPEEDMTLSVIKETKGDELELV+DDRTLSVIEETQDYDSD
Sbjct: 12  GGDDKTLHDNVEVTQANQLDAPEEDMTLSVIKETKGDELELVKDDRTLSVIEETQDYDSD 71

Query: 64  VVEDAKTVKVIEELQDDEFKVLEDDTTLSITEDTQDDELEIVEGDKTLSVVEETYNDDEQ 123
           VVEDAKTVK                                  GDKTLSVVEET NDDEQ
Sbjct: 72  VVEDAKTVK----------------------------------GDKTLSVVEETCNDDEQ 131

Query: 124 KQGGSVDAISLEELNRKCEEFKRRMKNDIQIEILTI 160
           KQGGSVDAISLEELNRKCEEF RRMKNDIQIEILTI
Sbjct: 132 KQGGSVDAISLEELNRKCEEFIRRMKNDIQIEILTI 133

BLAST of CSPI06G09210 vs. NCBI nr
Match: XP_038902155.1 (uncharacterized protein LOC120088789 [Benincasa hispida])

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-36
Identity = 102/157 (64.97%), Postives = 119/157 (75.80%), Query Frame = 0

Query: 5   GDDKTLHDNVEVTQADQLDAPEEDMTLS-VIKETKGDELE-LVEDDRTLSVIEETQDYDS 64
           GDD+TL   VEVT  D+LDA E+D TLS VI+ETKGDELE +VED++TLSVIEETQD D 
Sbjct: 116 GDDETLLVKVEVTPTDELDAVEDDRTLSVVIEETKGDELETVVEDNKTLSVIEETQDEDF 175

Query: 65  DVVEDAKTVKVIEELQDDEFKVLEDDTTLSITEDTQDDELEIVEGDKTLSVVEETYNDDE 124
           +VVEDAKT+++IEE                     +D EL IVEGDKTLS+ EET ND+E
Sbjct: 176 EVVEDAKTLRIIEEF--------------------RDHELGIVEGDKTLSIFEETRNDEE 235

Query: 125 QKQGGSVDAISLEELNRKCEEFKRRMKNDIQIEILTI 160
           Q+QGGSVD+ISLEELNRKCEEF RRMK DI+IEILTI
Sbjct: 236 QEQGGSVDSISLEELNRKCEEFIRRMKKDIRIEILTI 252

BLAST of CSPI06G09210 vs. NCBI nr
Match: XP_022140625.1 (uncharacterized protein LOC111011235 [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 7.0e-22
Identity = 80/151 (52.98%), Postives = 107/151 (70.86%), Query Frame = 0

Query: 14  VEVTQADQLDAPEEDMTLSVIKETKGDELELVEDDRTLSVIEETQDYDSDVVEDAKTV-- 73
           VE T+ D+L+  E+DMTL VI+E   DELE  +DDRTLSV+EE  D D++  +    V  
Sbjct: 105 VEETRDDELEVREDDMTLFVIEEIHDDELE-AKDDRTLSVVEEIHD-DNEQEQGGGDVDM 164

Query: 74  --KVIEELQDDEFKVLEDDTTLSITEDTQDDELEIVEGDKTLSVVEETYNDD-EQKQGGS 133
              ++EE +DDE +V+EDD TL   E+TQDDELE  + DKTLSVV+ET++D+ EQ+QGG 
Sbjct: 165 ILSIVEETRDDELEVVEDDMTLFDVEETQDDELEAAD-DKTLSVVKETHDDEQEQEQGGG 224

Query: 134 VDAISLEELNRKCEEFKRRMKNDIQIEILTI 160
            D ISLEELN+K +EF R  +  I+ E+LTI
Sbjct: 225 NDMISLEELNKKFDEFIRTTRMKIRAELLTI 252

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KCP42.8e-4875.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111940 PE=4 SV=1[more]
A0A6J1CFL53.4e-2252.98uncharacterized protein LOC111011235 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
Match NameE-valueIdentityDescription
KGN46604.15.7e-4875.64hypothetical protein Csa_005627 [Cucumis sativus][more]
XP_038902155.12.2e-3664.97uncharacterized protein LOC120088789 [Benincasa hispida][more]
XP_022140625.17.0e-2252.98uncharacterized protein LOC111011235 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 134..154
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G09210.1CSPI06G09210.1mRNA