CSPI06G07590 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G07590
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 6434144 .. 6434483 (+)
RNA-Seq Expression	CSPI06G07590
Synteny	CSPI06G07590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACGGAGTGGGAGCGGGGCGATGGCCGGGATAGAGGCTCAAATAGGGGTGATATGGTGGGGAAATATGGAGAGGCTAGGAAGGCATTTGAAGGGACAATTGGGAAGGTAGAGGGGCTAAGTCAAAAATGTTTGGAGTTTTGTTGAACCAAATAGGATTGGCTTGTATTCAACTTTACAAAATTGGAGAGGCAGTTAGGCTATTTCAAAAGGCCAAAGTGGTGTTAGAGGAACATTATGTGGTGTCTACCATTTTGATACTCTTTCTGGTTCTAGTAATCTTGTTGCTGCTTATGATGCTATATGGGAAGCAGAAAGGAATACCTTTTTTTCTTAA

mRNA sequence

ATGATGACGGAGTGGGAGCGGGGCGATGGCCGGGATAGAGGCTCAAATAGGGGTGATATGGTGGGGAAATATGGAGAGGCTAGGAAGGCATTTGAAGGGACAATTGGGAAGGCTATTTCAAAAGGCCAAAGTGGTGTTAGAGGAACATTATGTGGTGTCTACCATTTTGATACTCTTTCTGGTTCTAGTAATCTTGTTGCTGCTTATGATGCTATATGGGAAGCAGAAAGGAATACCTTTTTTTCTTAA

Coding sequence (CDS)

ATGATGACGGAGTGGGAGCGGGGCGATGGCCGGGATAGAGGCTCAAATAGGGGTGATATGGTGGGGAAATATGGAGAGGCTAGGAAGGCATTTGAAGGGACAATTGGGAAGGCTATTTCAAAAGGCCAAAGTGGTGTTAGAGGAACATTATGTGGTGTCTACCATTTTGATACTCTTTCTGGTTCTAGTAATCTTGTTGCTGCTTATGATGCTATATGGGAAGCAGAAAGGAATACCTTTTTTTCTTAA

Protein sequence

MMTEWERGDGRDRGSNRGDMVGKYGEARKAFEGTIGKAISKGQSGVRGTLCGVYHFDTLSGSSNLVAAYDAIWEAERNTFFS*

Homology

[Close]

BLAST of CSPI06G07590 vs. ExPASy TrEMBL
Match: A0A0A0KFA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G092580 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 39/75 (52.00%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 7   RGDGRDRGSNRGDMVGKYGEARKAFEGTIGKAISKGQSGVRGTLCGVYHFDTLSGSSNLV 66
           +GDGRDRGSN GDMVGKYGEARKAFEG IGK                     L G++NL 
Sbjct: 67  KGDGRDRGSNGGDMVGKYGEARKAFEGAIGK---------------------LRGTNNLA 120

Query: 67  AAYDAIWEAERNTFF 82
           AAYDA+   +   FF
Sbjct: 127 AAYDAMGSRKEYLFF 120

[Close]

BLAST of CSPI06G07590 vs. NCBI nr
Match: XP_038906715.1 (protein KINESIN LIGHT CHAIN-RELATED 1-like [Benincasa hispida] >XP_038906716.1 protein KINESIN LIGHT CHAIN-RELATED 1-like [Benincasa hispida])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 37/88 (42.05%), Postives = 42/88 (47.73%), Query Frame = 0


Query: 20  MVGKYGEARKAFEGTIGKAISKGQSGVRGTLC---------------------------- 77
           MVGKYGEARKAFEG IGK  +  +S + G L                             
Sbjct: 415 MVGKYGEARKAFEGAIGKLRAGAKSAMFGVLLNQMGLACIQLYKIGEAVKLFQEAKVVLE 474

The following BLAST results are available for this feature:

BLAST of CSPI06G07590 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G07590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFA9	1.9e-08	52.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G092580 PE=3 SV=1	[more]

BLAST of CSPI06G07590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906715.1	1.2e-04	42.05	protein KINESIN LIGHT CHAIN-RELATED 1-like [Benincasa hispida] >XP_038906716.1 p...	[more]

BLAST of CSPI06G07590 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G07590.1	CSPI06G07590.1	mRNA