CSPI06G06060 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G06060
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	SWIB domain-containing protein
Location	Chr6: 5351517 .. 5354614 (+)
RNA-Seq Expression	CSPI06G06060
Synteny	CSPI06G06060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATTCCTTCAGCTCATTCTCAGTTTAAAAGCTCTCGTTCTCCATTTCTTTCGTAGTTTCAGCGTAAGTCGAGCGTAAGCGGGCAGAAACCCTAGCACTAACCGTCGTCTTCATCGGACCAAAATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAAAGGCTGCAGAACTCTCTTAGATTCTCTCAAATCCACCACTCAAGCTTACTCTTCTACTCCTGGGGTCTCTTCCAAGAGTACCCTAAAACCCTCAACTGCTGCCGTTTCGGGCCAAAAGTCGAAACCCGCACCAAAGAAAGTGGCGAATCCTTCGGGCGGGCTTTTGAAAACCCAGAAAGTTTCTCCGACTCTCGCTGGCTTCCTCGGCCAGTCCGAGATTGCGCGCACTGAAGCCGTCAAGCAAATATGGGTGTACATCAAGCTGAATAACCTCCAGGTTACTTTTATTTCTCTTTTGTTCTAACCGATGTGGCTACTTTTTTACTGTTGTTTTTCTACCTTCTTTGCTGCAATCTTTTCGTTTGCGTTGTTATTTTAACTTAACCTAGAACTTGAGGTTTTGGGTGTGGTGTTCATTCGTAGTTTATCAAATGTTAGTTCTCTGGGAAGCCGAATCTCTCTTTCAGTCCTCAGTTGCTCAATTGAAGGTTTCTGAATTTTAAAACTAGGTTAAAGTATAGGCGAACCCCACTATTCTTGAATCAAATAATATATATACCTGTTCGCAAGTTTCAATTGCCTTGAATAATGAGCAAGCTATTCTGGTGGTGAATGCATTTATTCAGCAGTGTCGTTTAAGGATTGAATGCTACTGTCTGAGCTTTTCTTTTCACATGAATTCGGGTTTGAGCTCCGCTTTGACAAAGTTGGCTGCTTCATAGGGAGAACCTTCTAAAAAAATTACTTTTGAGTATAAATACTTCATCGAAGTTCATGAAAGGCCAAACGAGGATTTTCTGTCTCTTAATCAAATGAAATAGATGTCTTGGCTACGAGTTTCTCAAGGGCGTGAGGGGAATATGCATTCAACAGAAAAAAGCTTGAGCTTCTCTCATATTGCCCTATAGTATGTTTTTTTTCTTGGAAACAGCATGGAAGTGAGCCACTTTTAGCTTGTCTTTGCTCATCATTTGACATTGTGGTAAATGTATCAATATATTGAGGGTGTTGAGTGGTTGGAACAGGAGTTGTCTCGTGTCTGCCACACCCAGAACAATCAGTCAAATTTTATCTAATGGGTGTGTCAGATTAAGTATTCTATTAATGGGGTTAACTGTAGAGATTAAGGGGACACTTCGGCTCCAACCTCAAGTGGGTTTTATAGGTCATCCCATGTTTAGGACTCCAATAATAATATTTATGGTTTTTGGCATGGTATATAAGATTAATCTAGACTACACACCAAATACATACTATTATAACTAGTATATTAACTAATTCAGTGTCTCACACCCTTCTTAAAGGGTATTTGGACCAAAAATGTTTGGGAGCAAAAGCTAGGCAACATGGAGTTGTGAATTCCACTACTTGTTTGGCAAAGGAGTTAGCAGGGGCCTCACAACTAAAAAAAACATTGGTGTTATGGCTTGTTGACTTCTCTTACTGTGGGTTCTAGGAGTTCACAAATTTCTTAATTTCATATCTACTTGGACCACTGGGTGAAATTAGAATTTGACATAGTATTAATCTTTTTTCTGTTTTTTAGAGTTTGGAGGACTTTGCTGATTGATACACATGTATATAACCTTTTGGTATGCAGAACCCAACTGATAAGAGGCAGATCATTTGTGATGCAAAGCTGAAGGCTATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTCCAAAATTTCTATCCATTCATTTTGTGAAATCTGGTTAACCTAAGCTTTCTGTGCATGCTATTCTTAGCTGTTCTAATACCTCTCTTCCAAATCCTTGACGGTGTCTTGTGATGTCTTGTTAGGTTTCGTGATGTCTTGTTAGGTTTTGTTTGGCTGTCCTATGACACCACCTTCACTTTTTGGTTTTACTCTGATTTAGGGAGAGGGTGTTTCTTGTTTAGAAATTGTTGACCATTAGTGTTTTATAATTAATTAATGTATCTTTTCTGTCTAAATTTTACCTTTTTCAGGATTCGTAGTTTTTCTAATCTAAATTTGTAGACTTAGGAAAGTATTATATTCGCTTTGAGAATTTGATTTGGATTCTCTTGAAGCTCAATCAGGTAGACAGAAGTTCGCACCTATTTCATATACACATATATATGACTTTAAAATAATTTTGAAAAAGTAATTATCATTATGGACTTAAAATTGACATTAGTCAAGGGAAATGCAATTTATTGGTAGGTTGAATGGGAGCTCAATGATATTGAAAAGATTTGAAGAAAATTATGTTTCTAAATGGATATGCAAAGTAGCGTCTGAAATTCGAACTTACATAACAACACTAGAAATAATAATAATGATTTAAGTGAACCAATCCTAGAGGCAAGTTTACATTTTTCAAATTTGTTTTTGAAATCGTAATTCAAGAATTCCCAACTTTTAGGACTAGCCTTAGATCATCATAAACAAAGGTATACCAAAAGAAAACAATTGTTACTAACCGTATATAGGTGAGTAAGATTTTGAGGCTTGATGTCATAATTTCAAGCAAGTTGAATTACACTAATGTTGGTAGCCGTGTAGCAAGGATGAATGGAATAAAAAAAATTGAATATTATTAATTTCAGAGTGACTAGGAGGGGTAACAAGATTTAATGGAGAAGATGATGAACCCATTGATCAAGAATAGCAGGGGAACCATACCAGGGTCTCAATTCATCATCAGATCCAACAGGAGAATGATAGACTCCATCAAAACTAATGTTGAGTGCTCCCTCCAAATGAGCTGACACTTCTGGAACAACCCCATCTCCCCATACCTCACTCTCCCCACACACCTGATCCAAAGCCAAACATGCACAAACATTATTTTAATTTTGTATTCAACTTATGAACAAGGATATTCAAAACTTCTGACTTTATGATTGATCACTATCTTAACAAGTTAAAATGGTCAAGTTCACACATTAGATTTTAATACAAC

mRNA sequence

CAATTCCTTCAGCTCATTCTCAGTTTAAAAGCTCTCGTTCTCCATTTCTTTCGTAGTTTCAGCGTAAGTCGAGCGTAAGCGGGCAGAAACCCTAGCACTAACCGTCGTCTTCATCGGACCAAAATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAAAGGCTGCAGAACTCTCTTAGATTCTCTCAAATCCACCACTCAAGCTTACTCTTCTACTCCTGGGGTCTCTTCCAAGAGTACCCTAAAACCCTCAACTGCTGCCGTTTCGGGCCAAAAGTCGAAACCCGCACCAAAGAAAGTGGCGAATCCTTCGGGCGGGCTTTTGAAAACCCAGAAAGTTTCTCCGACTCTCGCTGGCTTCCTCGGCCAGTCCGAGATTGCGCGCACTGAAGCCGTCAAGCAAATATGGGTGTACATCAAGCTGAATAACCTCCAGAACCCAACTGATAAGAGGCAGATCATTTGTGATGCAAAGCTGAAGGCTATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTCCAAAATTTCTATCCATTCATTTTGTGAAATCTGGTTAACCTAAGCTTTCTGTGCATGCTATTCTTAGCTGTTCTAATACCTCTCTTCCAAATCCTTGACGGTGTCTTGTGATGTCTTGTTAGGTTTCGTGATGTCTTGTTAGGTTTTGTTTGGCTGTCCTATGACACCACCTTCACTTTTTGGTTTTACTCTGATTTAGGGAGAGGGTGTTTCTTGTTTAGAAATTGTTGACCATTAGTGTTTTATAATTAATTAATGTATCTTTTCTGTCTAAATTTTACCTTTTTCAGGATTCGTAGTTTTTCTAATCTAAATTTGTAGACTTAGGAAAGTATTATATTCGCTTTGAGAATTTGATTTGGATTCTCTTGAAGCTCAATCAGGTAGACAGAAGTTCGCACCTATTTCATATACACATATATATGACTTTAAAATAATTTTGAAAAAGTAATTATCATTATGGACTTAAAATTGACATTAGTCAAGGGAAATGCAATTTATTGGTAGGTTGAATGGGAGCTCAATGATATTGAAAAGATTTGAAGAAAATTATGTTTCTAAATGGATATGCAAAGTAGCGTCTGAAATTCGAACTTACATAACAACACTAGAAATAATAATAATGATTTAAGTGAACCAATCCTAGAGGCAAGTTTACATTTTTCAAATTTGTTTTTGAAATCGTAATTCAAGAATTCCCAACTTTTAGGACTAGCCTTAGATCATCATAAACAAAGGTATACCAAAAGAAAACAATTGTTACTAACCGTATATAGGTGAGTAAGATTTTGAGGCTTGATGTCATAATTTCAAGCAAGTTGAATTACACTAATGTTGGTAGCCGTGTAGCAAGGATGAATGGAATAAAAAAAATTGAATATTATTAATTTCAGAGTGACTAGGAGGGGTAACAAGATTTAATGGAGAAGATGATGAACCCATTGATCAAGAATAGCAGGGGAACCATACCAGGGTCTCAATTCATCATCAGATCCAACAGGAGAATGATAGACTCCATCAAAACTAATGTTGAGTGCTCCCTCCAAATGAGCTGACACTTCTGGAACAACCCCATCTCCCCATACCTCACTCTCCCCACACACCTGATCCAAAGCCAAACATGCACAAACATTATTTTAATTTTGTATTCAACTTATGAACAAGGATATTCAAAACTTCTGACTTTATGATTGATCACTATCTTAACAAGTTAAAATGGTCAAGTTCACACATTAGATTTTAATACAAC

Coding sequence (CDS)

ATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAAAGGCTGCAGAACTCTCTTAGATTCTCTCAAATCCACCACTCAAGCTTACTCTTCTACTCCTGGGGTCTCTTCCAAGAGTACCCTAAAACCCTCAACTGCTGCCGTTTCGGGCCAAAAGTCGAAACCCGCACCAAAGAAAGTGGCGAATCCTTCGGGCGGGCTTTTGAAAACCCAGAAAGTTTCTCCGACTCTCGCTGGCTTCCTCGGCCAGTCCGAGATTGCGCGCACTGAAGCCGTCAAGCAAATATGGGTGTACATCAAGCTGAATAACCTCCAGAACCCAACTGATAAGAGGCAGATCATTTGTGATGCAAAGCTGAAGGCTATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTCCAAAATTTCTATCCATTCATTTTGTGAAATCTGGTTAA

Protein sequence

MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG*

Homology

[Close]

BLAST of CSPI06G06060 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.4e-13
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 49  SGQKSKPAPKKVANPSGGLLKTQKV--SPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQN 108
           S  KSK   KK  +P    +  +KV  S  L  FLG  E+ RT+ VK IW YIK ++LQN
Sbjct: 100 SESKSKRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQN 159

Query: 109 PTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIH 142
           P D+R+I+CD K++ IFG  +K+ M  + K L+ H
Sbjct: 160 PKDRREILCDEKMEPIFG--KKMTMFSMNKLLTKH 192

[Close]

BLAST of CSPI06G06060 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-11
Identity = 48/132 (36.36%), Postives = 70/132 (53.03%), Query Frame = 0


Query: 16  RTLLDSLK-STTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKV- 75
           R+L D LK + T A   T  ++            S  K     KK    S   + T+KV 
Sbjct: 66  RSLEDLLKENATLAIELTKEITVSKRSSGEEKNDSETKGTHVEKKKGTVSKSPISTRKVT 125

Query: 76  -SPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGML 135
            S +LA  LG+ E+ RTE V+++W YIK +NLQNP +K++I+CD KL+ I G  +   M 
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--KSTNMF 185

Query: 136 EIPKFLSIHFVK 145
           E+ K L+ H  +
Sbjct: 186 EMHKILASHMTE 195

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BLAST of CSPI06G06060 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 37  SKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIW 96
           +K T K       G K K       NP   L K  K+SP LA FLG  +++R + VK++W
Sbjct: 90  AKRTRKRKEDGEEGGKRKRNQDPANNP---LNKPMKLSPKLAEFLGLEQLSRPQTVKKLW 149

Query: 97  VYIKLNNLQNPTDKRQIICDAKLKAIF 124
            YIK ++LQ+P DKR I+CD KLK++F
Sbjct: 150 EYIKAHDLQDPNDKRTILCDDKLKSVF 173

[Close]

BLAST of CSPI06G06060 vs. ExPASy Swiss-Prot
Match: Q2TBN1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus OX=9913 GN=SMARCD1 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.8e-04
Identity = 24/67 (35.82%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 72  KVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGM 131
           K+ P LA  LG     R   ++ +W YIK + LQ+P ++  +ICD  L+ IF   +++  
Sbjct: 296 KLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFES-QRMKF 355

Query: 132 LEIPKFL 139
            EIP+ L
Sbjct: 356 SEIPQRL 361

[Close]

BLAST of CSPI06G06060 vs. ExPASy Swiss-Prot
Match: Q96GM5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens OX=9606 GN=SMARCD1 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 2.8e-04
Identity = 24/67 (35.82%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 72  KVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGM 131
           K+ P LA  LG     R   ++ +W YIK + LQ+P ++  +ICD  L+ IF   +++  
Sbjct: 296 KLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFES-QRMKF 355

Query: 132 LEIPKFL 139
            EIP+ L
Sbjct: 356 SEIPQRL 361

[Close]

BLAST of CSPI06G06060 vs. ExPASy TrEMBL
Match: A0A0A0KCY9 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120
           ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 147
           AIFGGREKVGMLEIPKFLSIHFVKSG
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146

[Close]

BLAST of CSPI06G06060 vs. ExPASy TrEMBL
Match: A0A5D3DMJ2 (Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00610 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.7e-58
Identity = 121/146 (82.88%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+ 
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120
            N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW YIKLNNLQN TDKRQI CDAKLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 147
           AIFGGREKVGMLEI KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

[Close]

BLAST of CSPI06G06060 vs. ExPASy TrEMBL
Match: A0A1S3CBA0 (protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.7e-58
Identity = 121/146 (82.88%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+ 
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120
            N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW YIKLNNLQN TDKRQI CDAKLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 147
           AIFGGREKVGMLEI KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

[Close]

BLAST of CSPI06G06060 vs. ExPASy TrEMBL
Match: A0A6J1KHF5 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494404 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 9.9e-45
Identity = 102/145 (70.34%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  LK S AA S +KS+   KK 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120
            N SGG+ K+ +VSP LAGFLG SE +R+EAVKQIW YIKLN+LQNP +KRQI CD KLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKS 146
           AIF GRE VG+LEI K LS HFVKS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKS 145

[Close]

BLAST of CSPI06G06060 vs. ExPASy TrEMBL
Match: A0A6J1KEZ2 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494406 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.2e-44
Identity = 101/145 (69.66%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  LK S AA + +KS+   KK 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120
            N SGG+ K+ +VSP LAGFLG SE +R+EAVKQIW YIKLN+LQNP +KRQI CD KLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKS 146
           AIF GRE VG+LEI K LS HFVKS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKS 145

[Close]

BLAST of CSPI06G06060 vs. NCBI nr
Match: XP_004154030.1 (upstream activation factor subunit UAF30 isoform X1 [Cucumis sativus] >KGN46262.1 hypothetical protein Csa_005564 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 2.3e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120
           ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 147
           AIFGGREKVGMLEIPKFLSIHFVKSG
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146

[Close]

BLAST of CSPI06G06060 vs. NCBI nr
Match: XP_008460088.1 (PREDICTED: protein TRI1-like [Cucumis melo] >KAA0039983.1 protein TRI1-like [Cucumis melo var. makuwa] >TYK24519.1 protein TRI1-like [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 5.6e-58
Identity = 121/146 (82.88%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+ 
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120
            N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW YIKLNNLQN TDKRQI CDAKLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 147
           AIFGGREKVGMLEI KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

[Close]

BLAST of CSPI06G06060 vs. NCBI nr
Match: XP_031743273.1 (upstream activation factor subunit spp27 isoform X2 [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-47
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTD 110
           ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQ+  D
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQSLED 109

[Close]

BLAST of CSPI06G06060 vs. NCBI nr
Match: XP_038906873.1 (upstream activation factor subunit spp27-like [Benincasa hispida])

HSP 1 Score: 198.0 bits (502), Expect = 5.8e-47
Identity = 107/145 (73.79%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASG  NGTRFF+GCRTL DSLKSTTQAYSSTP VS+K  LK S  AVSGQKS   PKKV
Sbjct: 1   MASG-RNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKV 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120
            N S G+ K+  VSP LAGFLG SE +R+EAVKQIW YIKLNNLQ+P DKRQI CD KLK
Sbjct: 61  VNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKS 146
           AIF GREKVG LEI K L+ HFVKS
Sbjct: 121 AIFDGREKVGFLEIGKLLTPHFVKS 144

[Close]

BLAST of CSPI06G06060 vs. NCBI nr
Match: KAG6593745.1 (hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.2 bits (487), Expect = 3.2e-45
Identity = 104/145 (71.72%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  LK S AA S +KS+   KK 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120
            N SGG+LK+ +VSP LAGFLG SE +R EAVKQIW YIKLNNLQNP +KRQI CD KLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKS 146
           AIF GRE VG+LEI K LS HFVKS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKS 145

[Close]

BLAST of CSPI06G06060 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-24
Identity = 65/135 (48.15%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 12  FKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSK-PAPKKVANPSGGLLKT 71
           F+G R+LL      T +  S  G + K   KP   A    K+K  +P K    S G+ K 
Sbjct: 9   FRGARSLLAPASRATSSLVSA-GSTKKPAAKPKAKAKPKPKAKSDSPAKKTPRSTGIFKV 68

Query: 72  QKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVG 131
             VSP LA FLG  E +RT+A+K IW YIK ++LQNP DKR+I CD  LK IF G++KVG
Sbjct: 69  TPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVG 128

Query: 132 MLEIPKFLSIHFVKS 146
            LEI K LS HFVK+
Sbjct: 129 FLEISKLLSPHFVKT 142

[Close]

BLAST of CSPI06G06060 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-23
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 0


Query: 59  KVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAK 118
           K      G+LK   VS  LA F+G++E++RT AVK+IW YIKLNNLQNP +KR+I+CD +
Sbjct: 22  KTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQ 81

Query: 119 LKAIFGGREKVGMLEIPKFLSIHFVKS 146
           LK IF G++ VG LEI K LS HF KS
Sbjct: 82  LKTIFSGKDTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of CSPI06G06060 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-21
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 60  VANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKL 119
           VA    G+ KT+ VS  LA F G+ E+ R  A+K++W Y+KL+NLQNP +K++I CD KL
Sbjct: 26  VAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKL 85

Query: 120 KAIFGGREKVGMLEIPKFLSIHFVKS 146
           K IF G++KVG+ EI K LS HF KS
Sbjct: 86  KTIFDGKDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of CSPI06G06060 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-17
Identity = 52/135 (38.52%), Postives = 80/135 (59.26%), Query Frame = 0


Query: 9   TRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLL 68
           T  F+   T L SL+     ++S P    +  ++  T+A    +     K+V     G++
Sbjct: 16  TTSFRNPSTPLSSLR-----FASHPAAKLR-LVRAVTSATESSEPTATNKRVPR---GIM 75

Query: 69  KTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLKAIFGGREK 128
           K + VSP +   +   EIART+A+K+IW YIK ++LQ+P +KR+I+CD KLK IF GR++
Sbjct: 76  KPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDR 135

Query: 129 VGMLEIPKFLSIHFV 144
           VG LEI K +  HF+
Sbjct: 136 VGFLEIAKLIGPHFL 141

[Close]

BLAST of CSPI06G06060 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-16
Identity = 50/143 (34.97%), Postives = 79/143 (55.24%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           ++SG+ + T        L  S+ S +    S    ++   ++  T+A +         K 
Sbjct: 3   LSSGIFSTTFLCVDTAPLRSSMLSPSSLRLSPNHPTNLRMVRAVTSAAAASSDPTTTTKT 62

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120
             P  G++K + VS  +   +G  EI RT+A+K+IW YIK ++LQ+P +KR I+CD KLK
Sbjct: 63  REPR-GIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLK 122

Query: 121 AIFGGREKVGMLEIPKFLSIHFV 144
            IF G+E+VG LEI K +  HF+
Sbjct: 123 KIFEGKERVGFLEIAKLIGPHFL 144

The following BLAST results are available for this feature:

BLAST of CSPI06G06060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q05024	7.4e-13	44.21	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
Q08747	1.4e-11	36.36	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
O74503	2.0e-10	43.68	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q2TBN1	2.8e-04	35.82	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]
Q96GM5	2.8e-04	35.82	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

BLAST of CSPI06G06060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCY9	1.1e-72	100.00	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 S...	[more]
A0A5D3DMJ2	2.7e-58	82.88	Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00...	[more]
A0A1S3CBA0	2.7e-58	82.88	protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1	[more]
A0A6J1KHF5	9.9e-45	70.34	upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1KEZ2	2.2e-44	69.66	upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of CSPI06G06060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004154030.1	2.3e-72	100.00	upstream activation factor subunit UAF30 isoform X1 [Cucumis sativus] >KGN46262....	[more]
XP_008460088.1	5.6e-58	82.88	PREDICTED: protein TRI1-like [Cucumis melo] >KAA0039983.1 protein TRI1-like [Cuc...	[more]
XP_031743273.1	2.0e-47	97.25	upstream activation factor subunit spp27 isoform X2 [Cucumis sativus]	[more]
XP_038906873.1	5.8e-47	73.79	upstream activation factor subunit spp27-like [Benincasa hispida]	[more]
KAG6593745.1	3.2e-45	71.72	hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI06G06060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03590.1	1.1e-24	48.15	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	1.6e-23	57.47	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	4.4e-21	53.49	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	1.7e-17	38.52	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	1.9e-16	34.97	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 67..146 e-value: 4.2E-30 score: 116.0
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 70..142 e-value: 1.6E-29 score: 101.6
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 66..144 score: 21.704117
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 61..146 e-value: 4.5E-27 score: 95.8
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 64..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..51
None	No IPR available	PANTHER	PTHR13844:SF67	PROTEIN TRI1	coord: 7..145
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 7..145
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 72..142 e-value: 4.483E-36 score: 117.259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G06060.1	CSPI06G06060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus