CSPI06G06030 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G06030
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	50S ribosomal protein L3
Location	Chr6: 5336009 .. 5338358 (+)
RNA-Seq Expression	CSPI06G06030
Synteny	CSPI06G06030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGGGAAAATATAAGCGGATAAGAAAAAGGGAGAGTCCTCTCAATCCCAGAAGAACCACCTCCGTCTTCTTCAGCTTCCTTCATCTTCTTCTTCTTCGTCATCCTCATCTTCATATGAGTCATTGAAACCTTTGAAGAAGAAGAAATGTCTATCATTTCATTTTCATCAGCTTCTGCCTCAACCAAACATCCAATTTTCACTAACAATCCTTCTTCTTCTTCTTCTTCTTCTTCATCATCTCTCACACTCAGAACTTCTTTCCTCGCTCTTCCTCTCAAATCCCACCACAAAAACAACCTTCGTTTCCATTTTCCAACACGGCCAACCACCAGACGTCCTAGCGATGGCCTCTCCGTTTGTATGAGCATGGAGGCTGGCATTGGCGTTATGGCCACTAAGCTCGGCATGATGAGCTTCTTTGAACCAGATGGCAAGGTTGTCCCTGTCACCGTGGTCGGCTTCAAGGAAGGCAACATCGTCACCCAGGTTAAGACGGACGCGACTGACGGCTACAGTGCCGTTCAGGTTGGCTACCGTAGGGTTAGGGATCGAAAATTGACGAAACCGGAATTGGGGCATCTTGAGAAAGCTGGAGCGATTCCAATGCGCCATTTGCAGGAGTTTCGCCTTGAGTCTGTTGATGCATTTGAGCCCAATCAGCGCCTCGTTTTCAATGAACTTTTCAAGGAGGGGGACCTGGTTGATGTTTCGGGCACTACAATTGGAAAGGGATTTCAAGGTTTTTGAGTTTCTTGCTTTTTCTGTTTGAAATCTGTGTTTATTTCATAGCTACGAAATTGCCTCGCCTCCCTGTTTTCCTTGGAGCTTATGGTTCTTGTTCTGTGCCTGCGCATAATGTTGGAGTTGAATCTAGGGCATTTTTTTCCCTGTGCCTGCATAATGTTAGAATTGAATTTAGGCTTCCTCAGGAAGGATTAAACATGAATTTTCATTGATGTTGTTTGAATGCACAATGGCATATCTATTCAAAGCCTGAACCAGTCTTCCATGAAAGAAGCTGTTTAGATTTCCATTCCCCAAGTATTGAATGTGAGGATATGATAGTTTGATGAGTGCAAATATTTGCTAATTTTGTGTGGGTATAAGGATGTGCCCGTGGTACCTTGGTTGACCAACACACATTCTTTGTCATCCCTTGTCATGCTAGACTCCACGAGATTGTGCTTACATCTTATGCTCTATTAAATCACCATTAGACATGAGAGCTTAAGTTGAAACTTTATGGTAGGTTTTTATCATTAAATATGTACTCAAACCCCAAACTTACACACCTATTTGATTTACAAGACCCACGTTATTATAAAGTTAGAAGAAAACGGACCATAGAAAGTTTGTTTCACCAACCATCTTATTCTTTCAAAAATTGCAATATAACCTTCGATCTTTCGTAGGCGTTTCAAAAATACTCATGCAATAGAAATCCTTTATAATTTTGGATAAACTTGTACATGGAACATTGTGGCAGTGACCTAATGGTGTAACAGATCTACATTTCCGTTGTTGTGGGTTTCAATTTTTATATGCAGTTCATTTCTACTTCTAGGGTAGTTTTGAAACGTTTACAGAAAGTCAAGAGTATTATTGCAACTTTTTATTTTTTAAACAAACAGCAAAGTTTGGGATGTTCTTTGTAACTTAACCTAAATTTTAACCATTTTATGTGCTCTCCACCTCCTTTCAACACTACTCTCTAACTGGTTTCTTGTATCATTCTCTCTATAATTCTTCTCTAGGTGGAATCAAGAGGCACAACTTCAAAAGAGGTCCAATGAGCCACGGTTCAAAGAGCCACAGAGCACTTGGATCGATCGGTGCAGGAACTACACCAGGGCGTGTTTACAAGGGAAAAAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTCAAGATTGTAAAGATCGATGAAGACCTTAATGTTGTGATGATCAAAGGAGCCGTTCCAGGTAAACCAGGAAACCTTCTTCGTATAGCTCCTGCAAAGATAGTAGGACAGAACATTCCTAAGAGCTAGCTTTAGCTAGTCTGTTGGAATTGTGTTTTTCCAATTCTTTTTTTGTTTGTTTGTTTCTTGAGCTGTTGTCTCTCTTCAACTGGTTATTTGTATTATGATAAGTTAACAGTTGAGTTCTTCAAGAATGTTCGATCCATTCCAAGTTTTTACATCAGTTGGTGATTACAAGTAATTGGTTGCATTCATCTGTTGATAAATTAAGAGGTTGTTCTTATTAAGGTTGTTGTGTATACTATATACCAGAAAAATGTTGTTCCTAAAGTAGCTTTGTTTTGTAGCAATGCCTTCTTAGATTTATTCCTTG

mRNA sequence

GGAGGGAAAATATAAGCGGATAAGAAAAAGGGAGAGTCCTCTCAATCCCAGAAGAACCACCTCCGTCTTCTTCAGCTTCCTTCATCTTCTTCTTCTTCGTCATCCTCATCTTCATATGAGTCATTGAAACCTTTGAAGAAGAAGAAATGTCTATCATTTCATTTTCATCAGCTTCTGCCTCAACCAAACATCCAATTTTCACTAACAATCCTTCTTCTTCTTCTTCTTCTTCTTCATCATCTCTCACACTCAGAACTTCTTTCCTCGCTCTTCCTCTCAAATCCCACCACAAAAACAACCTTCGTTTCCATTTTCCAACACGGCCAACCACCAGACGTCCTAGCGATGGCCTCTCCGTTTGTATGAGCATGGAGGCTGGCATTGGCGTTATGGCCACTAAGCTCGGCATGATGAGCTTCTTTGAACCAGATGGCAAGGTTGTCCCTGTCACCGTGGTCGGCTTCAAGGAAGGCAACATCGTCACCCAGGTTAAGACGGACGCGACTGACGGCTACAGTGCCGTTCAGGTTGGCTACCGTAGGGTTAGGGATCGAAAATTGACGAAACCGGAATTGGGGCATCTTGAGAAAGCTGGAGCGATTCCAATGCGCCATTTGCAGGAGTTTCGCCTTGAGTCTGTTGATGCATTTGAGCCCAATCAGCGCCTCGTTTTCAATGAACTTTTCAAGGAGGGGGACCTGGTTGATGTTTCGGGCACTACAATTGGAAAGGGATTTCAAGGTGGAATCAAGAGGCACAACTTCAAAAGAGGTCCAATGAGCCACGGTTCAAAGAGCCACAGAGCACTTGGATCGATCGGTGCAGGAACTACACCAGGGCGTGTTTACAAGGGAAAAAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTCAAGATTGTAAAGATCGATGAAGACCTTAATGTTGTGATGATCAAAGGAGCCGTTCCAGGTAAACCAGGAAACCTTCTTCGTATAGCTCCTGCAAAGATAGTAGGACAGAACATTCCTAAGAGCTAGCTTTAGCTAGTCTGTTGGAATTGTGTTTTTCCAATTCTTTTTTTGTTTGTTTGTTTCTTGAGCTGTTGTCTCTCTTCAACTGGTTATTTGTATTATGATAAGTTAACAGTTGAGTTCTTCAAGAATGTTCGATCCATTCCAAGTTTTTACATCAGTTGGTGATTACAAGTAATTGGTTGCATTCATCTGTTGATAAATTAAGAGGTTGTTCTTATTAAGGTTGTTGTGTATACTATATACCAGAAAAATGTTGTTCCTAAAGTAGCTTTGTTTTGTAGCAATGCCTTCTTAGATTTATTCCTTG

Coding sequence (CDS)

ATGTCTATCATTTCATTTTCATCAGCTTCTGCCTCAACCAAACATCCAATTTTCACTAACAATCCTTCTTCTTCTTCTTCTTCTTCTTCATCATCTCTCACACTCAGAACTTCTTTCCTCGCTCTTCCTCTCAAATCCCACCACAAAAACAACCTTCGTTTCCATTTTCCAACACGGCCAACCACCAGACGTCCTAGCGATGGCCTCTCCGTTTGTATGAGCATGGAGGCTGGCATTGGCGTTATGGCCACTAAGCTCGGCATGATGAGCTTCTTTGAACCAGATGGCAAGGTTGTCCCTGTCACCGTGGTCGGCTTCAAGGAAGGCAACATCGTCACCCAGGTTAAGACGGACGCGACTGACGGCTACAGTGCCGTTCAGGTTGGCTACCGTAGGGTTAGGGATCGAAAATTGACGAAACCGGAATTGGGGCATCTTGAGAAAGCTGGAGCGATTCCAATGCGCCATTTGCAGGAGTTTCGCCTTGAGTCTGTTGATGCATTTGAGCCCAATCAGCGCCTCGTTTTCAATGAACTTTTCAAGGAGGGGGACCTGGTTGATGTTTCGGGCACTACAATTGGAAAGGGATTTCAAGGTGGAATCAAGAGGCACAACTTCAAAAGAGGTCCAATGAGCCACGGTTCAAAGAGCCACAGAGCACTTGGATCGATCGGTGCAGGAACTACACCAGGGCGTGTTTACAAGGGAAAAAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTCAAGATTGTAAAGATCGATGAAGACCTTAATGTTGTGATGATCAAAGGAGCCGTTCCAGGTAAACCAGGAAACCTTCTTCGTATAGCTCCTGCAAAGATAGTAGGACAGAACATTCCTAAGAGCTAG

Protein sequence

MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRPTTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS*

Homology

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BLAST of CSPI06G06030 vs. ExPASy Swiss-Prot
Match: O80360 (50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPL3 PE=2 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 7.7e-110
Identity = 206/266 (77.44%), Postives = 233/266 (87.59%), Query Frame = 0


Query: 30  SSSLTLRTSFL-ALPLKSHHKNNLRFHFPTRPTTRRPSDGLSVCMSMEAGIGVMATKLGM 89
           ++ LTLR+ FL  LPL++     L+ H   +PT+   S   S+  S+EAG+GVMATKLGM
Sbjct: 3   TTPLTLRSPFLHRLPLRA-----LKTH---KPTSLHISKS-SISASLEAGVGVMATKLGM 62

Query: 90  MSFFEPDGKVVPVTVVGFKEGNIVTQVKTDATDGYSAVQVGYRRVRDRKLTKPELGHLEK 149
           MSFFE  G VVPVTVVGF+EGNIVTQ+KT+ATDGY+AVQVGYRRVRDRKLTKPE+GHLEK
Sbjct: 63  MSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLEK 122

Query: 150 AGAIPMRHLQEFRLESVDAFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKR 209
           +G IP+RHLQEFRL+S+D FE  Q+L F ELFKEGDLVDVSGTTIGKGFQGGIKRHNFKR
Sbjct: 123 SGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKR 182

Query: 210 GPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDEDLNVVMIK 269
           G M+HGSKSHR LGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKID+ LN++MIK
Sbjct: 183 GQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDQLNIIMIK 242

Query: 270 GAVPGKPGNLLRIAPAKIVGQNIPKS 295
           GA+PGKPGNLLRIAPAKIVG+NIPKS
Sbjct: 243 GALPGKPGNLLRIAPAKIVGKNIPKS 259

[Close]

BLAST of CSPI06G06030 vs. ExPASy Swiss-Prot
Match: Q9SKX4 (50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3A PE=2 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.8e-106
Identity = 189/230 (82.17%), Postives = 210/230 (91.30%), Query Frame = 0


Query: 65  PSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDATDGYS 124
           P     V  SMEAGIGVM +KLGMMSFFE DG VVPVTVVGF+EGNIVTQ+KT ATDGY 
Sbjct: 42  PKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYD 101

Query: 125 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELFKEGD 184
           AVQ+GYRRVRD+KLTKPE GHL+KAG IPMRHLQEFRL +++ FEPNQ+LVF+E+FKEGD
Sbjct: 102 AVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGD 161

Query: 185 LVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 244
           LVDV+GTTIGKGFQGGIKRH+FKRG M+HGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 162 LVDVAGTTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 221

Query: 245 GTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 295
           GT+ KIRKLKIVK+D++LNVVMIKGA+PGKPGNLLRI PAKIVG NIPK+
Sbjct: 222 GTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]

BLAST of CSPI06G06030 vs. ExPASy Swiss-Prot
Match: P82191 (50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL3 PE=1 SV=2)

HSP 1 Score: 383.6 bits (984), Expect = 2.0e-105
Identity = 213/300 (71.00%), Postives = 240/300 (80.00%), Query Frame = 0


Query: 2   SIISFSSASASTKHPIFTNNPSSSSSSSS-----SSLTLRTSFLALPLKSHHKNNLRFHF 61
           SI S S   +S+K  + +    S SSS +      SL L TSF+  P   +    L+   
Sbjct: 9   SIKSSSCTYSSSKRSLSSPKAVSLSSSVNGTPKVQSLRLSTSFVCSP---NQIIKLKSVS 68

Query: 62  PTRPT-TRRPSDGLSV-CMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ 121
           P+R T  RR   GL +  MS++AGIGVM TKLGMMSFFE DG VVPVTV+GFKEGNIVTQ
Sbjct: 69  PSRSTQLRRAVGGLEIKMMSVDAGIGVMGTKLGMMSFFEEDGTVVPVTVIGFKEGNIVTQ 128

Query: 122 VKTDATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRL 181
           VKT++TDGY+AVQVGY R+RDRKLT PE GHL KAG IPMRHLQEFRL SVD F P+Q+L
Sbjct: 129 VKTESTDGYNAVQVGYERLRDRKLTMPERGHLNKAGVIPMRHLQEFRLVSVDDFTPSQKL 188

Query: 182 VFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVY 241
           +F ELFKEGD+VD+SGTTIGKGFQGGIKRHNFKRG M+HGSKSHRALGSIGAGTTPG VY
Sbjct: 189 LFEELFKEGDMVDISGTTIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSIGAGTTPGHVY 248

Query: 242 KGKKMPGRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 295
           KGKKMPGRMGGTK KIRKLKI+KID DL VVMIKGAVPGKPGNLLR+APAKIVG+NIPK+
Sbjct: 249 KGKKMPGRMGGTKTKIRKLKIMKIDTDLRVVMIKGAVPGKPGNLLRLAPAKIVGKNIPKN 305

[Close]

BLAST of CSPI06G06030 vs. ExPASy Swiss-Prot
Match: B0C1D3 (50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplC PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 7.5e-65
Identity = 122/213 (57.28%), Postives = 162/213 (76.06%), Query Frame = 0


Query: 79  IGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNI-VTQVKTDATDGYSAVQVGYRRVRDRK 138
           +G++ TKLGM   F+  G+ +PVTVV  + G   VTQ+KT  TDGY+A+Q+GY    ++ 
Sbjct: 3   VGILGTKLGMTQVFDEAGRAIPVTVV--QAGPCPVTQIKTAQTDGYTAIQIGYGSTTEKA 62

Query: 139 LTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELFKEGDLVDVSGTTIGKGF 198
           LT+PELGHL+K+G+ P+RHLQE+RL  V  +E  Q  +  +LF EG LVD+SGT+IG+GF
Sbjct: 63  LTRPELGHLKKSGSTPVRHLQEYRLADVSEYELGQS-ISADLFSEGQLVDISGTSIGRGF 122

Query: 199 QGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVK 258
            G  KRHNF+RGPM HGSK+HRA GS GAGTTPGR+Y GK+M G+MG  K+ IRKL +V+
Sbjct: 123 AGYQKRHNFRRGPMGHGSKNHRAPGSTGAGTTPGRIYPGKRMAGQMGNVKKTIRKLTVVR 182

Query: 259 IDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQN 291
           +D + NV++IKG+VPGKPG LL I PA IVG++
Sbjct: 183 VDAERNVLLIKGSVPGKPGALLNIQPATIVGES 212

[Close]

BLAST of CSPI06G06030 vs. ExPASy Swiss-Prot
Match: B1XJT9 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplC PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.9e-64
Identity = 124/213 (58.22%), Postives = 164/213 (77.00%), Query Frame = 0


Query: 79  IGVMATKLGMMSFFEPD-GKVVPVTVVGFKEGN-IVTQVKTDATDGYSAVQVGYRRVRDR 138
           +G++ TKLGM   F+ + G  +PVTVV  + G   VTQ+KT  TDGY++VQ+GY  V+++
Sbjct: 3   LGILGTKLGMTQIFDNETGTAIPVTVV--QAGPCTVTQIKTSETDGYTSVQIGYGDVKEK 62

Query: 139 KLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELFKEGDLVDVSGTTIGKG 198
            LTKP+LGHL+KA A P+RHL+E+RL+ V  +E  Q +  N +F+ G +VDVSG TIG+G
Sbjct: 63  NLTKPQLGHLKKADAAPLRHLKEYRLDDVSGYELGQAITAN-IFEAGQVVDVSGNTIGRG 122

Query: 199 FQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIV 258
           F G  KRHNFKRG M+HGSK+HR  GS GAGTTPGRVY GK+M GR GGTK  +RKL++V
Sbjct: 123 FAGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTKITVRKLEVV 182

Query: 259 KIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQ 290
           ++DE+ N+++IKGA+PGK GNLL IAP+ IVGQ
Sbjct: 183 RVDEEKNLLLIKGAIPGKAGNLLSIAPSNIVGQ 212

[Close]

BLAST of CSPI06G06030 vs. ExPASy TrEMBL
Match: A0A0A0K9U5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G078530 PE=3 SV=1)

HSP 1 Score: 567.4 bits (1461), Expect = 3.5e-158
Identity = 293/294 (99.66%), Postives = 294/294 (100.00%), Query Frame = 0


Query: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRP 60
           MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSH+KNNLRFHFPTRP
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHNKNNLRFHFPTRP 60

Query: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120
           TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT
Sbjct: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120

Query: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180
           DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF
Sbjct: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180

Query: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240
           KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP
Sbjct: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240

Query: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 295
           GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS
Sbjct: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 294

[Close]

BLAST of CSPI06G06030 vs. ExPASy TrEMBL
Match: A0A1S3CBR5 (50S ribosomal protein L3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499009 PE=3 SV=1)

HSP 1 Score: 555.4 bits (1430), Expect = 1.4e-154
Identity = 288/294 (97.96%), Postives = 291/294 (98.98%), Query Frame = 0


Query: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRP 60
           MSIISFSSASASTKHPIFTNNP SSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTR 
Sbjct: 1   MSIISFSSASASTKHPIFTNNP-SSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRR 60

Query: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120
           TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKT+AT
Sbjct: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEAT 120

Query: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180
           DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVD FEPNQRLVFNELF
Sbjct: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELF 180

Query: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240
           KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP
Sbjct: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240

Query: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 295
           GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVG+NIPK+
Sbjct: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293

[Close]

BLAST of CSPI06G06030 vs. ExPASy TrEMBL
Match: A0A5A7TD05 (50S ribosomal protein L3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002680 PE=3 SV=1)

HSP 1 Score: 552.4 bits (1422), Expect = 1.2e-153
Identity = 287/294 (97.62%), Postives = 290/294 (98.64%), Query Frame = 0


Query: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRP 60
           MSIISFSSASASTKHPIFTNNP SSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHF TR 
Sbjct: 1   MSIISFSSASASTKHPIFTNNP-SSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFATRR 60

Query: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120
           TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKT+AT
Sbjct: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEAT 120

Query: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180
           DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVD FEPNQRLVFNELF
Sbjct: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELF 180

Query: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240
           KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP
Sbjct: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240

Query: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 295
           GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVG+NIPK+
Sbjct: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293

[Close]

BLAST of CSPI06G06030 vs. ExPASy TrEMBL
Match: A0A6J1KXN5 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111499138 PE=3 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 1.9e-143
Identity = 266/294 (90.48%), Postives = 280/294 (95.24%), Query Frame = 0


Query: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRP 60
           MS+IS SSAS S +HPIFTNN  +SSSS SSSL LRTSFLALPLKSH  NN+RF FP   
Sbjct: 1   MSVISISSASTSKRHPIFTNN--ASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPR 60

Query: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120
           TTRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KT+AT
Sbjct: 61  TTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEAT 120

Query: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180
           DGYSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRLES+D FEPNQRLVFNELF
Sbjct: 121 DGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELF 180

Query: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240
           KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKKMP
Sbjct: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMP 240

Query: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 295
           GRMGGTKRKIRKLKIVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVG+NIPK+
Sbjct: 241 GRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of CSPI06G06030 vs. ExPASy TrEMBL
Match: A0A6J1H630 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460446 PE=3 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 3.2e-143
Identity = 266/294 (90.48%), Postives = 279/294 (94.90%), Query Frame = 0


Query: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRP 60
           MS+IS S AS S +HPIFTNN  +SSSS SSSL LRTSFLALPLKSH  NNLRF FP   
Sbjct: 1   MSVISISLASTSNRHPIFTNN--ASSSSPSSSLKLRTSFLALPLKSHRNNNLRFQFPRPR 60

Query: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120
           TTRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KT+AT
Sbjct: 61  TTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEAT 120

Query: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180
           DGYSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRLES+D FEPNQRLVFNELF
Sbjct: 121 DGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELF 180

Query: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240
           KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKKMP
Sbjct: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMP 240

Query: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 295
           GRMGGTKRKIRKLKIVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVG+NIPK+
Sbjct: 241 GRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of CSPI06G06030 vs. NCBI nr
Match: XP_004154027.1 (50S ribosomal protein L3, chloroplastic [Cucumis sativus] >KGN46258.1 hypothetical protein Csa_005128 [Cucumis sativus])

HSP 1 Score: 567.4 bits (1461), Expect = 7.3e-158
Identity = 293/294 (99.66%), Postives = 294/294 (100.00%), Query Frame = 0


Query: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRP 60
           MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSH+KNNLRFHFPTRP
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHNKNNLRFHFPTRP 60

Query: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120
           TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT
Sbjct: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120

Query: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180
           DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF
Sbjct: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180

Query: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240
           KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP
Sbjct: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240

Query: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 295
           GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS
Sbjct: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 294

[Close]

BLAST of CSPI06G06030 vs. NCBI nr
Match: XP_008460096.1 (PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis melo])

HSP 1 Score: 555.4 bits (1430), Expect = 2.9e-154
Identity = 288/294 (97.96%), Postives = 291/294 (98.98%), Query Frame = 0


Query: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRP 60
           MSIISFSSASASTKHPIFTNNP SSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTR 
Sbjct: 1   MSIISFSSASASTKHPIFTNNP-SSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRR 60

Query: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120
           TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKT+AT
Sbjct: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEAT 120

Query: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180
           DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVD FEPNQRLVFNELF
Sbjct: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELF 180

Query: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240
           KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP
Sbjct: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240

Query: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 295
           GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVG+NIPK+
Sbjct: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293

[Close]

BLAST of CSPI06G06030 vs. NCBI nr
Match: KAA0039986.1 (50S ribosomal protein L3 [Cucumis melo var. makuwa])

HSP 1 Score: 552.4 bits (1422), Expect = 2.4e-153
Identity = 287/294 (97.62%), Postives = 290/294 (98.64%), Query Frame = 0


Query: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRP 60
           MSIISFSSASASTKHPIFTNNP SSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHF TR 
Sbjct: 1   MSIISFSSASASTKHPIFTNNP-SSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFATRR 60

Query: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120
           TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKT+AT
Sbjct: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEAT 120

Query: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180
           DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVD FEPNQRLVFNELF
Sbjct: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELF 180

Query: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240
           KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP
Sbjct: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240

Query: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 295
           GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVG+NIPK+
Sbjct: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293

[Close]

BLAST of CSPI06G06030 vs. NCBI nr
Match: KAG6574805.1 (50S ribosomal protein L3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013387.1 50S ribosomal protein L3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 520.0 bits (1338), Expect = 1.3e-143
Identity = 267/294 (90.82%), Postives = 280/294 (95.24%), Query Frame = 0


Query: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRP 60
           MS+IS SSAS S +HPIFTNN  +SSSS SSSL LRTSFLALPLKSH  NNLRF FP   
Sbjct: 1   MSVISISSASTSNRHPIFTNN--ASSSSPSSSLKLRTSFLALPLKSHRNNNLRFQFPRPR 60

Query: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120
           TTRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KT+AT
Sbjct: 61  TTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEAT 120

Query: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180
           DGYSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRLES+D FEPNQRLVFNELF
Sbjct: 121 DGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELF 180

Query: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240
           KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKKMP
Sbjct: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMP 240

Query: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 295
           GRMGGTKRKIRKLKIVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVG+NIPK+
Sbjct: 241 GRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of CSPI06G06030 vs. NCBI nr
Match: XP_038876222.1 (50S ribosomal protein L3, chloroplastic [Benincasa hispida])

HSP 1 Score: 519.2 bits (1336), Expect = 2.3e-143
Identity = 270/296 (91.22%), Postives = 280/296 (94.59%), Query Frame = 0


Query: 1   MSIISFSSASASTKHPIFTNNPSSSS--SSSSSSLTLRTSFLALPLKSHHKNNLRFHFPT 60
           MSIISFSSAS S +HPIF NN SSSS  SS+SSSLTLRTSFLALP+  HHKNNLR  FPT
Sbjct: 1   MSIISFSSASTSARHPIFANNASSSSSFSSTSSSLTLRTSFLALPMNPHHKNNLRLQFPT 60

Query: 61  RPTTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTD 120
           R TTRRP++ LSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKT+
Sbjct: 61  RRTTRRPNNALSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTE 120

Query: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNE 180
           ATDGYSAVQVGYRRVRDRKLTKPELGHL+KAGAIPMRHLQEFRLESV  FE NQ LVFNE
Sbjct: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLESVGGFESNQSLVFNE 180

Query: 181 LFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKK 240
           LFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKK
Sbjct: 181 LFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240

Query: 241 MPGRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 295
           MPGRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVG+NIPK+
Sbjct: 241 MPGRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 296

[Close]

BLAST of CSPI06G06030 vs. TAIR 10
Match: AT2G43030.1 (Ribosomal protein L3 family protein )

HSP 1 Score: 387.1 bits (993), Expect = 1.3e-107
Identity = 189/230 (82.17%), Postives = 210/230 (91.30%), Query Frame = 0


Query: 65  PSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDATDGYS 124
           P     V  SMEAGIGVM +KLGMMSFFE DG VVPVTVVGF+EGNIVTQ+KT ATDGY 
Sbjct: 42  PKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYD 101

Query: 125 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELFKEGD 184
           AVQ+GYRRVRD+KLTKPE GHL+KAG IPMRHLQEFRL +++ FEPNQ+LVF+E+FKEGD
Sbjct: 102 AVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGD 161

Query: 185 LVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 244
           LVDV+GTTIGKGFQGGIKRH+FKRG M+HGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 162 LVDVAGTTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 221

Query: 245 GTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 295
           GT+ KIRKLKIVK+D++LNVVMIKGA+PGKPGNLLRI PAKIVG NIPK+
Sbjct: 222 GTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]

BLAST of CSPI06G06030 vs. TAIR 10
Match: AT3G17465.1 (ribosomal protein L3 plastid )

HSP 1 Score: 142.1 bits (357), Expect = 7.0e-34
Identity = 83/206 (40.29%), Postives = 124/206 (60.19%), Query Frame = 0


Query: 80  GVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDATDGYSAVQVGYRRVRDRKLT 139
           G++A K GM + ++  GK +P++++ + + NIV+QVKT   +G  A+Q+G  + + + L+
Sbjct: 78  GIIAVKCGMTALWDKWGKRIPISIL-WVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLS 137

Query: 140 KPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQG 199
           K  +GH    G    R L+EF + + DA  P    +    F  G  VDV+G T GKGFQG
Sbjct: 138 KAVVGHFRAQGVPLKRKLREFPV-TEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQG 197

Query: 200 GIKRHNFKRGPMSHG-SKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKI 259
            +KRH F   P SHG S SHR+ GS G    PG+V+KG+KM GRMG  +R ++ + + KI
Sbjct: 198 CMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKI 257

Query: 260 DEDLNVVMIKGAVPGKPGNLLRIAPA 285
           D   N++ ++G VPG  GN + I  A
Sbjct: 258 DPARNLMWVRGQVPGAEGNFVFIKDA 281

The following BLAST results are available for this feature:

BLAST of CSPI06G06030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80360	7.7e-110	77.44	50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum OX=4097 ...	[more]
Q9SKX4	1.8e-106	82.17	50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL...	[more]
P82191	2.0e-105	71.00	50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL3 PE=...	[more]
B0C1D3	7.5e-65	57.28	50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G...	[more]
B1XJT9	2.9e-64	58.22	50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR...	[more]

BLAST of CSPI06G06030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9U5	3.5e-158	99.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G078530 PE=3 SV=1	[more]
A0A1S3CBR5	1.4e-154	97.96	50S ribosomal protein L3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499009 ...	[more]
A0A5A7TD05	1.2e-153	97.62	50S ribosomal protein L3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A6J1KXN5	1.9e-143	90.48	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H630	3.2e-143	90.48	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of CSPI06G06030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004154027.1	7.3e-158	99.66	50S ribosomal protein L3, chloroplastic [Cucumis sativus] >KGN46258.1 hypothetic...	[more]
XP_008460096.1	2.9e-154	97.96	PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis melo]	[more]
KAA0039986.1	2.4e-153	97.62	50S ribosomal protein L3 [Cucumis melo var. makuwa]	[more]
KAG6574805.1	1.3e-143	90.82	50S ribosomal protein L3, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_038876222.1	2.3e-143	91.22	50S ribosomal protein L3, chloroplastic [Benincasa hispida]	[more]

BLAST of CSPI06G06030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43030.1	1.3e-107	82.17	Ribosomal protein L3 family protein	[more]
AT3G17465.1	7.0e-34	40.29	ribosomal protein L3 plastid	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.810		coord: 111..171 e-value: 1.2E-20 score: 75.7
None	No IPR available	GENE3D	2.40.30.10	Translation factors	coord: 206..286 e-value: 5.3E-21 score: 76.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR11229:SF16	50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC	coord: 73..293
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAM	TIGR03625	TIGR03625	coord: 80..281 e-value: 2.4E-74 score: 247.5
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 73..293
IPR019927	Ribosomal protein L3, bacterial/organelle-type	HAMAP	MF_01325_B	Ribosomal_L3_B	coord: 78..285 score: 35.740292
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 173..260 e-value: 1.7E-17 score: 63.5
IPR019926	Ribosomal protein L3, conserved site	PROSITE	PS00474	RIBOSOMAL_L3	coord: 180..203
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 79..290

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G06030.1	CSPI06G06030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome