CSPI06G05690 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G05690
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr6: 5112228 .. 5113100 (-)
RNA-Seq Expression	CSPI06G05690
Synteny	CSPI06G05690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTATTTCAACAGGTTGATTCTACATGTTCAACAACAAGGTAAAATTAAAGGAGTCTGCTTCAGTAATGAATGCAACCTCACACATCTTCTCTTTGACGATGATATTCTTTTATTTGTTGAAGATAATGATGAATATATAACAAATTTTAGGAATATCATCTTTTTATTTGAAGCGGCATCTCGTCTGAATTTCAATCTATCAAAGTCCACCATATCTCCCATAAATGTCGACAACTGCAGAACTGATGTTGTGTGTAATCTTTGGGGCCTAAAATAATAGTATCTTCCAATTCCTCACCTTGGAGTTCCGTTAGGAGGAAAGCCATCTTCAGCATCATTTTGGGAGAATATCACAGCAAAAATTCATAAGAAATTGAACAACCGGAAATTCTCTTATATCTCAAAAGGGGGGAAAATGACTCTCATTAAATCCACTCTAATCAGTTTGCCCACATATCAACTATCGATATTTAAAGCTCCAGTTGGCATCTGTAAAAAAATTGAAAAATATTGGAGAGATTTCTTATGGAAGAACAAAAATGAAGACAAGCTTACCCACCTCCTTAGATGGTCCAAAGTCACTCTTCCTATTGAAAAAGGTGGTCTTGGTATACATAAAATAACAGATACCAACTTTTCCTTCTTATGCAAATGGCTCTGGAGATTCCATACTGAAGCATATCCCCTCTGGAAAAAAATTATTACTGCTAAATATAATAAGTCCTTCATTGGAGAGCTGCCTGCATATGGAAAATATAGTTCTTCGAAAGCTCCTTGGAGAAATATTATCAAAGGTGTCGAATGCTCAGATCAAATGGACGGTAAACAATGGCGAAAATCTCTCCTTTTGGAAATGAATTTGGTATGA

mRNA sequence

ATGGATTATTTCAACAGGTTGATTCTACATGTTCAACAACAAGCGGCATCTCGTCTGAATTTCAATCTATCAAAGTCCACCATATCTCCCATAAATGTCGACAACTGCAGAACTGATGTTTATCTTCCAATTCCTCACCTTGGAGTTCCGTTAGGAGGAAAGCCATCTTCAGCATCATTTTGGGAGAATATCACAGCAAAAATTCATAAGAAATTGAACAACCGGAAATTCTCTTATATCTCAAAAGGGGGGAAAATGACTCTCATTAAATCCACTCTAATCAGTTTGCCCACATATCAACTATCGATATTTAAAGCTCCAGTTGGCATCTGTAAAAAAATTGAAAAATATTGGAGAGATTTCTTATGGAAGAACAAAAATGAAGACAAGCTTACCCACCTCCTTAGATGGTCCAAAGTCACTCTTCCTATTGAAAAAGGTGGTCTTGGTATACATAAAATAACAGATACCAACTTTTCCTTCTTATGCAAATGGCTCTGGAGATTCCATACTGAAGCATATCCCCTCTGGAAAAAAATTATTACTGCTAAATATAATAAGTCCTTCATTGGAGAGCTGCCTGCATATGGAAAATATAGTTCTTCGAAAGCTCCTTGGAGAAATATTATCAAAGGTGTCGAATGCTCAGATCAAATGGACGGTAAACAATGGCGAAAATCTCTCCTTTTGGAAATGAATTTGGTATGA

Coding sequence (CDS)

ATGGATTATTTCAACAGGTTGATTCTACATGTTCAACAACAAGCGGCATCTCGTCTGAATTTCAATCTATCAAAGTCCACCATATCTCCCATAAATGTCGACAACTGCAGAACTGATGTTTATCTTCCAATTCCTCACCTTGGAGTTCCGTTAGGAGGAAAGCCATCTTCAGCATCATTTTGGGAGAATATCACAGCAAAAATTCATAAGAAATTGAACAACCGGAAATTCTCTTATATCTCAAAAGGGGGGAAAATGACTCTCATTAAATCCACTCTAATCAGTTTGCCCACATATCAACTATCGATATTTAAAGCTCCAGTTGGCATCTGTAAAAAAATTGAAAAATATTGGAGAGATTTCTTATGGAAGAACAAAAATGAAGACAAGCTTACCCACCTCCTTAGATGGTCCAAAGTCACTCTTCCTATTGAAAAAGGTGGTCTTGGTATACATAAAATAACAGATACCAACTTTTCCTTCTTATGCAAATGGCTCTGGAGATTCCATACTGAAGCATATCCCCTCTGGAAAAAAATTATTACTGCTAAATATAATAAGTCCTTCATTGGAGAGCTGCCTGCATATGGAAAATATAGTTCTTCGAAAGCTCCTTGGAGAAATATTATCAAAGGTGTCGAATGCTCAGATCAAATGGACGGTAAACAATGGCGAAAATCTCTCCTTTTGGAAATGAATTTGGTATGA

Protein sequence

MDYFNRLILHVQQQAASRLNFNLSKSTISPINVDNCRTDVYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSKAPWRNIIKGVECSDQMDGKQWRKSLLLEMNLV*

Homology

[Close]

BLAST of CSPI06G05690 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.9e-16
Identity = 49/168 (29.17%), Postives = 86/168 (51.19%), Query Frame = 0


Query: 49  VPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPV 108
           +P+  K  +   +  I  ++  +++  +   +S  G++TL K+ L S+P + +S    P 
Sbjct: 1   MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60

Query: 109 GICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWR 168
            I  ++++  R FLW +  E K  HL++WSKV  P ++GGLG+      N + + K  WR
Sbjct: 61  SILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWR 120

Query: 169 FHTEAYPLWKKIITAKYNKSFIGE---LPAYGKYSSSKAPWRNIIKGV 214
              E   LW  ++  KY+   I +   L   G +SS+   WR+I  G+
Sbjct: 121 LLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGSWSST---WRSIAIGL 165

[Close]

BLAST of CSPI06G05690 vs. ExPASy TrEMBL
Match: A0A5A7TI93 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00120 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 7.6e-63
Identity = 122/211 (57.82%), Postives = 153/211 (72.51%), Query Frame = 0


Query: 14  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWEN 73
           Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK ++ +FW+N
Sbjct: 375 QLASGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQTTKTFWKN 434

Query: 74  ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
           +  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSIFKAPV  CK IEK WR+FLW
Sbjct: 435 VEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSACKNIEKTWRNFLW 494

Query: 134 KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 193
           KN  E    HL+ W+K+T P E+GGLGI ++ DTNF+ L KWLWR+  E  PLWKKII A
Sbjct: 495 KNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINA 554

Query: 194 KYNKSFIGELPAYGKYSSSKAPWRNIIKGVE 215
           KY     G++P    +SSS++PW +I KGVE
Sbjct: 555 KYRSLSKGDIPCVCNHSSSRSPWFSICKGVE 585

[Close]

BLAST of CSPI06G05690 vs. ExPASy TrEMBL
Match: A0A5A7TES3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00040 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 3.8e-62
Identity = 121/211 (57.35%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 14  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWEN 73
           Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK  + +FW+N
Sbjct: 38  QLASGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKN 97

Query: 74  ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
           +  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSIFKAPV  CK IEK WR+FLW
Sbjct: 98  VEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLW 157

Query: 134 KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 193
           KN  E    HL+ W+K+T P E+GGLGI ++ DTNF+ L KWLWR+  E  PLWKKII A
Sbjct: 158 KNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINA 217

Query: 194 KYNKSFIGELPAYGKYSSSKAPWRNIIKGVE 215
           KY     G++P    +SSS++PW +I KG+E
Sbjct: 218 KYRSLSKGDIPCVCNHSSSRSPWFSICKGLE 248

[Close]

BLAST of CSPI06G05690 vs. ExPASy TrEMBL
Match: A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 8.4e-62
Identity = 121/211 (57.35%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 14  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWEN 73
           Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK ++ +FW+N
Sbjct: 614 QLASGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQTTKAFWKN 673

Query: 74  ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
           +  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSIFKAPV  CK IEK WR+FLW
Sbjct: 674 VEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLW 733

Query: 134 KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 193
           KN  E    HL+ W+K+T   EKGGLGI ++ DTNF+ L KWLWR+  E  PLWKKII A
Sbjct: 734 KNPPETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINA 793

Query: 194 KYNKSFIGELPAYGKYSSSKAPWRNIIKGVE 215
           KY     G++P    +SSS++PW +I KG+E
Sbjct: 794 KYRSLSKGDIPCVCNHSSSRSPWFSICKGLE 824

[Close]

BLAST of CSPI06G05690 vs. ExPASy TrEMBL
Match: A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.9e-61
Identity = 121/211 (57.35%), Postives = 151/211 (71.56%), Query Frame = 0


Query: 14  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWEN 73
           Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK  + +FW+N
Sbjct: 551 QLASGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKN 610

Query: 74  ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
           +  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSIFKAPV  CK IEK WR+FLW
Sbjct: 611 VEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLW 670

Query: 134 KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 193
           KN  E    HL+ W+K+T   EKGGLGI ++ DTNF+ L KWLWR+  E  PLWKKII A
Sbjct: 671 KNPPETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINA 730

Query: 194 KYNKSFIGELPAYGKYSSSKAPWRNIIKGVE 215
           KY     G++P    +SSS++PW +I KG+E
Sbjct: 731 KYRSLSKGDIPCVCNHSSSRSPWFSICKGLE 761

[Close]

BLAST of CSPI06G05690 vs. ExPASy TrEMBL
Match: A0A1S4E2K5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC107991687 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 5.5e-61
Identity = 120/211 (56.87%), Postives = 150/211 (71.09%), Query Frame = 0


Query: 14  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWEN 73
           Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK  + +FW+N
Sbjct: 551 QLASGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKN 610

Query: 74  ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
           +  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSIFK PV  CK IEK WR+FLW
Sbjct: 611 VEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNFLW 670

Query: 134 KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 193
           KN  E    HL+ W+K+T   EKGGLGI ++ DTNF+ L KWLWR+  E  PLWKKII A
Sbjct: 671 KNPPETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINA 730

Query: 194 KYNKSFIGELPAYGKYSSSKAPWRNIIKGVE 215
           KY     G++P    +SSS++PW +I KG+E
Sbjct: 731 KYRSLSKGDIPCVCNHSSSRSPWFSICKGLE 761

[Close]

BLAST of CSPI06G05690 vs. NCBI nr
Match: KAA0041367.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 1.6e-62
Identity = 122/211 (57.82%), Postives = 153/211 (72.51%), Query Frame = 0


Query: 14  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWEN 73
           Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK ++ +FW+N
Sbjct: 375 QLASGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQTTKTFWKN 434

Query: 74  ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
           +  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSIFKAPV  CK IEK WR+FLW
Sbjct: 435 VEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSACKNIEKTWRNFLW 494

Query: 134 KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 193
           KN  E    HL+ W+K+T P E+GGLGI ++ DTNF+ L KWLWR+  E  PLWKKII A
Sbjct: 495 KNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINA 554

Query: 194 KYNKSFIGELPAYGKYSSSKAPWRNIIKGVE 215
           KY     G++P    +SSS++PW +I KGVE
Sbjct: 555 KYRSLSKGDIPCVCNHSSSRSPWFSICKGVE 585

[Close]

BLAST of CSPI06G05690 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 248.1 bits (632), Expect = 7.8e-62
Identity = 121/211 (57.35%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 14  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWEN 73
           Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK  + +FW+N
Sbjct: 38  QLASGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKN 97

Query: 74  ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
           +  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSIFKAPV  CK IEK WR+FLW
Sbjct: 98  VEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLW 157

Query: 134 KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 193
           KN  E    HL+ W+K+T P E+GGLGI ++ DTNF+ L KWLWR+  E  PLWKKII A
Sbjct: 158 KNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINA 217

Query: 194 KYNKSFIGELPAYGKYSSSKAPWRNIIKGVE 215
           KY     G++P    +SSS++PW +I KG+E
Sbjct: 218 KYRSLSKGDIPCVCNHSSSRSPWFSICKGLE 248

[Close]

BLAST of CSPI06G05690 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.7e-61
Identity = 121/211 (57.35%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 14  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWEN 73
           Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK ++ +FW+N
Sbjct: 614 QLASGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQTTKAFWKN 673

Query: 74  ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
           +  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSIFKAPV  CK IEK WR+FLW
Sbjct: 674 VEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLW 733

Query: 134 KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 193
           KN  E    HL+ W+K+T   EKGGLGI ++ DTNF+ L KWLWR+  E  PLWKKII A
Sbjct: 734 KNPPETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINA 793

Query: 194 KYNKSFIGELPAYGKYSSSKAPWRNIIKGVE 215
           KY     G++P    +SSS++PW +I KG+E
Sbjct: 794 KYRSLSKGDIPCVCNHSSSRSPWFSICKGLE 824

[Close]

BLAST of CSPI06G05690 vs. NCBI nr
Match: KAA0039770.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24727.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 245.7 bits (626), Expect = 3.9e-61
Identity = 121/211 (57.35%), Postives = 151/211 (71.56%), Query Frame = 0


Query: 14  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWEN 73
           Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK  + +FW+N
Sbjct: 551 QLASGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKN 610

Query: 74  ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
           +  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSIFKAPV  CK IEK WR+FLW
Sbjct: 611 VEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLW 670

Query: 134 KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 193
           KN  E    HL+ W+K+T   EKGGLGI ++ DTNF+ L KWLWR+  E  PLWKKII A
Sbjct: 671 KNPPETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINA 730

Query: 194 KYNKSFIGELPAYGKYSSSKAPWRNIIKGVE 215
           KY     G++P    +SSS++PW +I KG+E
Sbjct: 731 KYRSLSKGDIPCVCNHSSSRSPWFSICKGLE 761

[Close]

BLAST of CSPI06G05690 vs. NCBI nr
Match: XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-60
Identity = 120/211 (56.87%), Postives = 150/211 (71.09%), Query Frame = 0


Query: 14  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWEN 73
           Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK  + +FW+N
Sbjct: 551 QLASGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKN 610

Query: 74  ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
           +  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSIFK PV  CK IEK WR+FLW
Sbjct: 611 VEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNFLW 670

Query: 134 KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 193
           KN  E    HL+ W+K+T   EKGGLGI ++ DTNF+ L KWLWR+  E  PLWKKII A
Sbjct: 671 KNPPETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINA 730

Query: 194 KYNKSFIGELPAYGKYSSSKAPWRNIIKGVE 215
           KY     G++P    +SSS++PW +I KG+E
Sbjct: 731 KYRSLSKGDIPCVCNHSSSRSPWFSICKGLE 761

[Close]

BLAST of CSPI06G05690 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-12
Identity = 38/136 (27.94%), Postives = 65/136 (47.79%), Query Frame = 0


Query: 42  LPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQL 101
           LP+ +LG+PL  K  + S +  +  KI  ++      ++S  G++ LI S + SL  + +
Sbjct: 23  LPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWM 82

Query: 102 SIFKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTN--- 161
           S F+ P    K+I+     FLW     +     + WS V  P ++GGLGI  + + N   
Sbjct: 83  SAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGS 142

Query: 162 ------FSFLCKWLWR 169
                  + L  W+W+
Sbjct: 143 FWSISGNTTLGSWMWK 158

[Close]

BLAST of CSPI06G05690 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-10
Identity = 30/92 (32.61%), Postives = 47/92 (51.09%), Query Frame = 0


Query: 94  ISLPTYQLSIFKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHK 153
           ++LPTY ++ F  P  +CK+I     DF W+NK E K  H   W  ++    +GG+G   
Sbjct: 1   MALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKD 60

Query: 154 ITDTNFSFLCKWLWRFHTEAYPLWKKIITAKY 186
           I   N + L K +WR  +    L  K+  ++Y
Sbjct: 61  IEAFNLALLGKQMWRMLSRPESLMAKVFKSRY 92

The following BLAST results are available for this feature:

BLAST of CSPI06G05690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	3.9e-16	29.17	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of CSPI06G05690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TI93	7.6e-63	57.82	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TES3	3.8e-62	57.35	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C4J1	8.4e-62	57.35	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DM72	1.9e-61	57.35	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S4E2K5	5.5e-61	56.87	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC1079...	[more]

BLAST of CSPI06G05690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041367.1	1.6e-62	57.82	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0040037.1	7.8e-62	57.35	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK06777.1	1.7e-61	57.35	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039770.1	3.9e-61	57.35	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK247...	[more]
XP_016902461.1	1.1e-60	56.87	PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]	[more]

BLAST of CSPI06G05690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24255.1	2.7e-12	27.94	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G29090.1	1.5e-10	32.61	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 7..217
None	No IPR available	PANTHER	PTHR33116:SF33	OS01G0885550 PROTEIN	coord: 7..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G05690.1	CSPI06G05690.1	mRNA